FvH4_2g33510

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000541
Physical Location & Seq
Forward (+)
25111227 .. 25114311
3085 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g33510.t2

Sequence Viewer

Length: 1068 bp
ATGGCTTTTTTTACCGTGGCTGAGAAATGCGCTCCGATTACGCGCGCGGCGGCCAAGAGGAGGGTGGTGGCGGCCTTGGCCGAGGAGCAGCAGCTGGTGACTAAGAAGCGCACCGTGCTCGGAGATCTCACCAACTTGGCAAACGTCGTCGTTTTGGCCTCAAAAAACCCCAACTTGGATTTTGCGATACGGAAACCCACATGTGAAAGAAAGAGAGCTGCGCCGGAGCGGGTCAATGAAGACCCACAACTTTGTGGGCCTTATGCTTCTGATATCTATGCCTATCTTCGCAGAATGGAGGTGGAGCCAAAGAGAAGGCCATTGCCTGATTACATGGAGAGAATTCAGAAGGATGCTATTAATGCTAATATGAGAGGGATTCTTGTGGATTGGTTGGTAGAGGTTGCGGAAGATTTTAAACTTCTTCCGGACACTCTTCATTTATCTGTTTCCTACATTGATAAATATTTGTCGATGAATGTGATCAATAAGCATAAGCTTGAGCTGTTGGGAGTTGCTTCAATGTTCATTGCCTCGAAGTACGAAGAGATAAATCCTCCACTTAGTGACATGATAGAAAGTACATACAACAAAGCAGAGGTGATCAAGATGGAGGCTGATATCCTCAAATCCCTCAAATTTGAAATGGGGAATCCTACTGTTCGGACCTTTTTAAGAAAGTTTACTGATGTTGCTCAAGGGAATTATAAAACTCCCAATTTGGAGTTTGAGTTCTTGGTTTCTTACCTTGGAGAGCTAAGTTTGTTGGATTACAAATGTGTGAAATTCTTACCTTCTATGGTAGCTTCATCAGTTGTTTTCCTTGCAAGATTAATGATCAGATCAAAGATTAATCCTTGGTGTTCAACATTGCAACATTACACTGGATACAAAGCAGCTGATTTGAAAGATTGTGTTGTTGTGCTTCATGACTTGTACTTGGGTAGAAGAGGAGGATTGTTACAAGTTGTGCGAGAGAAATACAAACAACATAAGTTCAAGTATGTGGCAAACCTTCCCTGCCCTCCAGAGCTACCAGCTCCTCTGTTTGATAATGTGAAGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

356

Amino Acids

40.45

Weight (kDa)

9.1

Isoelectric Point (pI)

41.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 91 - 216 7.1e-37 Cyclin, N-terminal domain
Cyclin_C PF02984 219 - 367 2e-27 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000541)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47210 AT1G47210 AT1G47220 AT1G47230 AT1G47230 AT2G01310 AT5G43080 AT5G43080
fragaria_vesca FvH4_2g04770 FvH4_2g04770 FvH4_2g04770 FvH4_2g33510 FvH4_2g33510 FvH4_2g33510 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33530 FvH4_2g33530
malus_domestica MD05G1092000.v1.1 MD08G1091000.v1.1 MD08G1091200.v1.1 MD10G1100200.v1.1 MD10G1100700.v1.1 MD12G1105600.v1.1 MD15G1075100.v1.1 MD15G1075200.v1.1
prunus_persica Prupe.1G428000_v2.0.a1 Prupe.1G428100_v2.0.a1 Prupe.4G285800_v2.0.a1 Prupe.8G137700_v2.0.a1 Prupe.8G137700_v2.0.a1
pyrus_communis pycom05g09170 pycom08g07360 pycom08g07370 pycom15g07000 pycom15g07020
rosa_chinensis RchiOBHm_Chr3g0465621 RchiOBHm_Chr6g0254421 RchiOBHm_Chr6g0254451 RchiOBHm_Chr6g0308961 RchiOBHm_Chr6g0308971 RchiOBHm_Chr6g0308991 RchiOBHm_Chr7g0190851
rosa_laevigata RLG00000003915 RLG00000010598 RLG00000010599 RLG00000010600 RLG00000014913
rosa_multiflora Rmu_sc0009578.1_g000002 Rmu_sc0009578.1_g000003 Rmu_sc0029942.1_g000001 Rmu_sc0036151.1_g000001 Rmu_sc0036151.1_g000002 Rmu_sc0037719.1_g000001 Rmu_sc0042877.1_g000001 Rmu_ssc0000481.1_g000003
rosa_roxburghii Rroxscaffold_7G00159740 Rroxscaffold_7G00159750 Rroxscaffold_7G00159760 Rroxscaffold_7G00159770 Rroxscaffold_7G00210810
rosa_rugosa Rorug05G0552200 Rorug05G0552300 Rorug05G0552400
rosa_samantha Rh3CG081000 Rh6AG069300 Rh6AG481300 Rh6AG481600 Rh6BG062000 Rh6BG490400 Rh6BG490500 Rh6BG490600 Rh6CG062100 Rh6CG495700 Rh6CG495900 Rh6DG059100 Rh6DG481600 Rh6DG481700 Rh6DG481800
rosa_wichuraiana Rw6G006090 Rw6G041930 Rw6G041940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 708
AccBSI CCGCTC 1 cut(s) 229
AccII CGCG 3 cut(s) 43, 45, 47
AccIII TCCGGA 1 cut(s) 427
AciI CCGC 5 cut(s) 47, 50, 71, 229, 407
AcoI YGGCCR 2 cut(s) 51, 78
AcsI RAATTY 3 cut(s) 342, 638, 785
AdeI CACNNNGTG 1 cut(s) 566
AfaI GTAC 3 cut(s) 542, 583, 938
AfiI CCNNNNNNNGG 2 cut(s) 60, 175
AflIII ACRYGT 1 cut(s) 200
AgsI TTSAA 5 cut(s) 522, 644, 867, 907, 1000
AloI GAACNNNNNNTCC 2 cut(s) 716, 748
AluBI AGCT 9 cut(s) 94, 218, 499, 505, 757, 806, 899, 1033, 1040
AluI AGCT 9 cut(s) 94, 218, 499, 505, 757, 806, 899, 1033, 1040
Alw21I GWGCWC 1 cut(s) 120
AlwNI CAGNNNCTG 1 cut(s) 94
Aor13HI TCCGGA 1 cut(s) 427
AoxI GGCC 6 cut(s) 51, 72, 78, 156, 257, 317
ApeKI GCWGC 4 cut(s) 88, 91, 218, 896
ApoI RAATTY 3 cut(s) 342, 638, 785
AseI ATTAAT 3 cut(s) 360, 833, 852
AspLEI GCGC 5 cut(s) 32, 45, 47, 111, 223
AspS9I GGNCC 2 cut(s) 257, 666
AsuHPI GGTGA 3 cut(s) 109, 121, 613
AvaII GGWCC 1 cut(s) 666
BbsI GAAGAC 1 cut(s) 246
Bbv12I GWGCWC 1 cut(s) 120
BbvI GCAGC 4 cut(s) 100, 103, 205, 908
BccI CCATC 1 cut(s) 604
BcgI CGANNNNNNTGC 2 cut(s) 100, 134
BciVI GTATCC 1 cut(s) 881
BclI TGATCA 3 cut(s) 483, 603, 837
BfuI GTATCC 1 cut(s) 881
BglII AGATCT 1 cut(s) 124
BisI GCNGC 7 cut(s) 48, 51, 72, 89, 92, 219, 897
BlsI GCNGC 7 cut(s) 49, 52, 73, 90, 93, 220, 898
Bme18I GGWCC 1 cut(s) 666
BmgT120I GGNCC 2 cut(s) 257, 666
BmiI GGNNCC 1 cut(s) 306
BmsI GCATC 1 cut(s) 343
BpiI GAAGAC 1 cut(s) 246
BpmI CTGGAG 1 cut(s) 1011
BpuEI CTTGAG 2 cut(s) 521, 681
BsaJI CCNNGG 5 cut(s) 15, 75, 81, 748, 857
BsaWI WCCGGW 1 cut(s) 427
BsaXI ACNNNNNCTCC 2 cut(s) 716, 746
Bsc4I CCNNNNNNNGG 2 cut(s) 60, 175
Bse1I ACTGG 1 cut(s) 889
Bse3DI GCAATG 3 cut(s) 320, 528, 869
BseAI TCCGGA 1 cut(s) 427
BseDI CCNNGG 5 cut(s) 15, 75, 81, 748, 857
BseGI GGATG 1 cut(s) 358
BseLI CCNNNNNNNGG 2 cut(s) 60, 175
BseMI GCAATG 3 cut(s) 320, 528, 869
BseMII CTCAG 1 cut(s) 12
BseNI ACTGG 1 cut(s) 889
BsePI GCGCGC 1 cut(s) 43
BseRI GAGGAG 4 cut(s) 73, 98, 966, 1032
BseXI GCAGC 4 cut(s) 100, 103, 205, 908
Bsh1236I CGCG 3 cut(s) 43, 45, 47
BshFI GGCC 6 cut(s) 53, 74, 80, 158, 259, 319
BsiHKAI GWGCWC 1 cut(s) 120
BsiSI CCGG 2 cut(s) 224, 428
BslI CCNNNNNNNGG 2 cut(s) 60, 175
BsnI GGCC 6 cut(s) 53, 74, 80, 158, 259, 319
Bsp1286I GDGCHC 1 cut(s) 120
Bsp13I TCCGGA 1 cut(s) 427
Bsp143I GATC 5 cut(s) 124, 483, 603, 837, 842
BspACI CCGC 5 cut(s) 47, 50, 71, 229, 407
BspANI GGCC 6 cut(s) 53, 74, 80, 158, 259, 319
BspCNI CTCAG 1 cut(s) 13
BspEI TCCGGA 1 cut(s) 427
BspFNI CGCG 3 cut(s) 43, 45, 47
BspHI TCATGA 1 cut(s) 928
BspLI GGNNCC 1 cut(s) 306
BsrBI CCGCTC 1 cut(s) 229
BsrDI GCAATG 3 cut(s) 320, 528, 869
BsrI ACTGG 1 cut(s) 889
BssECI CCNNGG 5 cut(s) 15, 75, 81, 748, 857
BssHII GCGCGC 1 cut(s) 43
BssMI GATC 5 cut(s) 124, 483, 603, 837, 842
BssT1I CCWWGG 3 cut(s) 75, 748, 857
Bst4CI ACNGT 3 cut(s) 16, 115, 661
Bst6I CTCTTC 3 cut(s) 441, 540, 943
BstC8I GCNNGC 1 cut(s) 45
BstDEI CTNAG 4 cut(s) 21, 102, 563, 758
BstDSI CCRYGG 1 cut(s) 15
BstF5I GGATG 1 cut(s) 358
BstFNI CGCG 3 cut(s) 43, 45, 47
BstHHI GCGC 5 cut(s) 32, 45, 47, 111, 223
BstKTI GATC 5 cut(s) 127, 486, 606, 840, 845
BstMBI GATC 5 cut(s) 124, 483, 603, 837, 842
BstMWI GCNNNNNNNGC 3 cut(s) 77, 115, 362
BstNSI RCATGY 1 cut(s) 204
BstUI CGCG 3 cut(s) 43, 45, 47
BstV1I GCAGC 4 cut(s) 100, 103, 205, 908
BstV2I GAAGAC 1 cut(s) 246
BstX2I RGATCY 1 cut(s) 124
BstYI RGATCY 1 cut(s) 124
BsuI GTATCC 1 cut(s) 881
BsuRI GGCC 6 cut(s) 53, 74, 80, 158, 259, 319
BtgI CCRYGG 1 cut(s) 15
BtsCI GGATG 1 cut(s) 358
BtsIMutI CAGTG 1 cut(s) 882
Cac8I GCNNGC 1 cut(s) 45
CaiI CAGNNNCTG 1 cut(s) 94
CciI TCATGA 1 cut(s) 928
CfoI GCGC 5 cut(s) 32, 45, 47, 111, 223
Cfr13I GGNCC 2 cut(s) 257, 666
Csp6I GTAC 3 cut(s) 541, 582, 937
CviAII CATG 5 cut(s) 201, 334, 571, 929, 1065
CviQI GTAC 3 cut(s) 541, 582, 937
DdeI CTNAG 4 cut(s) 21, 102, 563, 758
DpnI GATC 5 cut(s) 126, 485, 605, 839, 844
DpnII GATC 5 cut(s) 124, 483, 603, 837, 842
DraI TTTAAA 1 cut(s) 418
DraIII CACNNNGTG 1 cut(s) 566
EaeI YGGCCR 2 cut(s) 51, 78
Eam1104I CTCTTC 3 cut(s) 441, 540, 943
EarI CTCTTC 3 cut(s) 441, 540, 943
Eco130I CCWWGG 3 cut(s) 75, 748, 857
Eco32I GATATC 2 cut(s) 274, 622
Eco47I GGWCC 1 cut(s) 666
EcoRI GAATTC 1 cut(s) 342
EcoRV GATATC 2 cut(s) 274, 622
EcoT14I CCWWGG 3 cut(s) 75, 748, 857
ErhI CCWWGG 3 cut(s) 75, 748, 857
FaeI CATG 5 cut(s) 204, 337, 574, 932, 1068
FatI CATG 5 cut(s) 200, 333, 570, 928, 1064
FauI CCCGC 1 cut(s) 222
FbaI TGATCA 3 cut(s) 483, 603, 837
Fnu4HI GCNGC 7 cut(s) 48, 51, 72, 89, 92, 219, 897
FokI GGATG 1 cut(s) 365
Fsp4HI GCNGC 7 cut(s) 48, 51, 72, 89, 92, 219, 897
GlaI GCGC 5 cut(s) 31, 44, 46, 110, 222
GluI GCNGC 7 cut(s) 48, 51, 72, 89, 92, 219, 897
GsuI CTGGAG 1 cut(s) 1011
HaeIII GGCC 6 cut(s) 53, 74, 80, 158, 259, 319
HapII CCGG 2 cut(s) 224, 428
HhaI GCGC 5 cut(s) 32, 45, 47, 111, 223
Hin1II CATG 5 cut(s) 204, 337, 574, 932, 1068
Hin6I GCGC 5 cut(s) 30, 43, 45, 109, 221
HinP1I GCGC 5 cut(s) 30, 43, 45, 109, 221
HindIII AAGCTT 1 cut(s) 497
HinfI GANTC 2 cut(s) 379, 652
HpaII CCGG 2 cut(s) 224, 428
HphI GGTGA 3 cut(s) 109, 121, 613
Hpy166II GTNNAC 1 cut(s) 684
Hpy188I TCNGA 6 cut(s) 36, 122, 271, 348, 666, 842
Hpy188III TCNNGA 4 cut(s) 428, 607, 929, 1028
Hpy8I GTNNAC 1 cut(s) 684
Hpy99I CGWCG 2 cut(s) 149, 152
HpyAV CCTTC 5 cut(s) 309, 343, 804, 1025, 1054
HpyCH4III ACNGT 3 cut(s) 16, 115, 661
HpyCH4IV ACGT 1 cut(s) 144
HpyCH4V TGCA 2 cut(s) 827, 874
HpyF10VI GCNNNNNNNGC 3 cut(s) 77, 115, 362
HpyF3I CTNAG 4 cut(s) 21, 102, 563, 758
HpySE526I ACGT 1 cut(s) 144
Hsp92II CATG 5 cut(s) 204, 337, 574, 932, 1068
HspAI GCGC 5 cut(s) 30, 43, 45, 109, 221
Kpn2I TCCGGA 1 cut(s) 427
Ksp22I TGATCA 3 cut(s) 483, 603, 837
Kzo9I GATC 5 cut(s) 124, 483, 603, 837, 842
LmnI GCTCC 5 cut(s) 37, 85, 226, 304, 1045
LpnPI CCDG 8 cut(s) 80, 237, 339, 441, 870, 1033, 1041, 1050
Lsp1109I GCAGC 4 cut(s) 100, 103, 205, 908
LweI GCATC 1 cut(s) 343
MaeII ACGT 1 cut(s) 144
MaeIII GTNAC 3 cut(s) 97, 566, 960
MalI GATC 5 cut(s) 126, 485, 605, 839, 844
MauBI CGCGCGCG 1 cut(s) 43
MbiI CCGCTC 1 cut(s) 229
MboI GATC 5 cut(s) 124, 483, 603, 837, 842
MboII GAAGA 7 cut(s) 251, 278, 416, 422, 428, 557, 960
MflI RGATCY 1 cut(s) 124
MhlI GDGCHC 1 cut(s) 120
MluCI AATT 5 cut(s) 342, 638, 703, 718, 785
MmeI TCCRAC 1 cut(s) 747
MroI TCCGGA 1 cut(s) 427
MseI TTAA 5 cut(s) 360, 417, 674, 833, 852
MspA1I CMGCKG 2 cut(s) 94, 899
MspI CCGG 2 cut(s) 224, 428
MvnI CGCG 3 cut(s) 43, 45, 47
MwoI GCNNNNNNNGC 3 cut(s) 77, 115, 362
NdeII GATC 5 cut(s) 124, 483, 603, 837, 842
NlaIII CATG 5 cut(s) 204, 337, 574, 932, 1068
NlaIV GGNNCC 1 cut(s) 306
NmeAIII GCCGAG 1 cut(s) 106
NmuCI GTSAC 2 cut(s) 97, 566
NspI RCATGY 1 cut(s) 204
PagI TCATGA 1 cut(s) 928
PauI GCGCGC 1 cut(s) 43
PciI ACATGT 1 cut(s) 200
PfeI GAWTC 2 cut(s) 379, 652
PkrI GCNGC 7 cut(s) 49, 52, 73, 90, 93, 220, 898
PscI ACATGT 1 cut(s) 200
PshBI ATTAAT 3 cut(s) 360, 833, 852
PsiI TTATAA 1 cut(s) 708
PspN4I GGNNCC 1 cut(s) 306
PspPI GGNCC 2 cut(s) 257, 666
PstNI CAGNNNCTG 1 cut(s) 94
PsuI RGATCY 1 cut(s) 124
PteI GCGCGC 1 cut(s) 43
PvuII CAGCTG 2 cut(s) 94, 899
RsaI GTAC 3 cut(s) 542, 583, 938
RsaNI GTAC 3 cut(s) 541, 582, 937
SaqAI TTAA 5 cut(s) 360, 417, 674, 833, 852
SatI GCNGC 7 cut(s) 48, 51, 72, 89, 92, 219, 897
Sau3AI GATC 5 cut(s) 124, 483, 603, 837, 842
Sau96I GGNCC 2 cut(s) 257, 666
SduI GDGCHC 1 cut(s) 120
SfaNI GCATC 1 cut(s) 343
SinI GGWCC 1 cut(s) 666
SmlI CTYRAG 2 cut(s) 500, 696
SmoI CTYRAG 2 cut(s) 500, 696
Sse9I AATT 5 cut(s) 342, 638, 703, 718, 785
SsiI CCGC 5 cut(s) 47, 50, 71, 229, 407
SspI AATATT 1 cut(s) 467
StyI CCWWGG 3 cut(s) 75, 748, 857
TaaI ACNGT 3 cut(s) 16, 115, 661
TaiI ACGT 1 cut(s) 147
TaqI TCGA 2 cut(s) 473, 536
TasI AATT 5 cut(s) 342, 638, 703, 718, 785
TatI WGTACW 2 cut(s) 581, 936
TauI GCSGC 3 cut(s) 50, 53, 74
TfiI GAWTC 2 cut(s) 379, 652
Tru1I TTAA 5 cut(s) 360, 417, 674, 833, 852
Tru9I TTAA 5 cut(s) 360, 417, 674, 833, 852
TscAI CASTG 1 cut(s) 889
TseFI GTSAC 2 cut(s) 97, 566
TseI GCWGC 4 cut(s) 88, 91, 218, 896
Tsp45I GTSAC 2 cut(s) 97, 566
TspDTI ATGAA 6 cut(s) 252, 428, 491, 517, 798, 917
TspGWI ACGGA 1 cut(s) 205
TspRI CASTG 1 cut(s) 889
VpaK11BI GGWCC 1 cut(s) 666
VspI ATTAAT 3 cut(s) 360, 833, 852
XapI RAATTY 3 cut(s) 342, 638, 785
XceI RCATGY 1 cut(s) 204
XcmI CCANNNNNNNNNTGG 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.