Rh6AG481600

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000541
Physical Location & Seq
Reverse (-)
66228118 .. 66231393
3276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG481600.1

Sequence Viewer

Length: 1020 bp
ATGGCTTCTTTCACTGTGGCCGAGAAATGCGCTCCGATTACGCGCGCCGCGGCGAAGAGGAGGGCGGCGGCGGCCTTGGCCGAGGAGCAGCAGCTGGCGACTAAGAAGCGCGCCGTGCTCGGAGATCTCACCAACTTTGCAAACGTCGTCGTTTTGGCCTCAAAAAACCCCAATTCCGATTCTGCGCTAAAGAAACCCAAACGGAGAGCTGTGCTGGAACGTGACAATGATGACCCACGGCTTTGTGGGCCTTATGCTTCTGATATCTATTCCTATCTTCGCAGAGTGGAGGTGGAACCAAAAAGGAGGCCATTGCCTGATTACATGGAGAGAATTCAGAAGGATGCTATTAATGCTAATATGAGAGGGGTTCTTGTGGATTGGTTGGTGGAGGTTGCAGATGAATTTAAACTTCTTCCAGACACTCTTCATCTATCTATTTCCTATGTTGATAAATATTTGTCGATGAATGTGATCAATAAGCAGAATCTCCAGCTATTGGGAGTTGCTTCAATGTTCATTGCCTCAAAGTATGAGGAGATTAATCCTCCACATGTGGATGACCTTATAGACATGACAGAAAATACATGCAGTAAAGCAGAGGTGATCAAGATGGAGGCTGATATCCTCAAATCCCTCAAATTTGAAATGGGGAATCCTACTGTTCGGACCTTCTTAAGAAAGTTTACGGATGTTGCTCAAGGGAATTATACAGTAAGCTCTCTCTCTATCTCTCTTGAATGCACATGTGAATTAGCCAAGTTGTTAATCTTTGATATTGACTGCTTGCCTGTTTTGTGTTGTCTACAGACTCCCAATTTGCAATTTGAGTTCTTGGTTTCCTACCTTTCAGAGTTAAGCTTGTTGGATTACAAATGTGTGAAATTCCTGCCTTCTATGGTAGCTTCATCAGTTGTTTTCCTTGCAAGATTAATGATTAGATCAAAGATGAATCCTTGGGTAAGAGTTTCGAATTTATACATGCTGATCTTATCTCTGAGTATGAAGGCAATCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

339

Amino Acids

38.21

Weight (kDa)

8.47

Isoelectric Point (pI)

41.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 88 - 217 1.6e-42 Cyclin, N-terminal domain
Cyclin_C PF02984 272 - 321 8.5e-12 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000541)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47210 AT1G47210 AT1G47220 AT1G47230 AT1G47230 AT2G01310 AT5G43080 AT5G43080
fragaria_vesca FvH4_2g04770 FvH4_2g04770 FvH4_2g04770 FvH4_2g33510 FvH4_2g33510 FvH4_2g33510 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33530 FvH4_2g33530
malus_domestica MD05G1092000.v1.1 MD08G1091000.v1.1 MD08G1091200.v1.1 MD10G1100200.v1.1 MD10G1100700.v1.1 MD12G1105600.v1.1 MD15G1075100.v1.1 MD15G1075200.v1.1
prunus_persica Prupe.1G428000_v2.0.a1 Prupe.1G428100_v2.0.a1 Prupe.4G285800_v2.0.a1 Prupe.8G137700_v2.0.a1 Prupe.8G137700_v2.0.a1
pyrus_communis pycom05g09170 pycom08g07360 pycom08g07370 pycom15g07000 pycom15g07020
rosa_chinensis RchiOBHm_Chr3g0465621 RchiOBHm_Chr6g0254421 RchiOBHm_Chr6g0254451 RchiOBHm_Chr6g0308961 RchiOBHm_Chr6g0308971 RchiOBHm_Chr6g0308991 RchiOBHm_Chr7g0190851
rosa_laevigata RLG00000003915 RLG00000010598 RLG00000010599 RLG00000010600 RLG00000014913
rosa_multiflora Rmu_sc0009578.1_g000002 Rmu_sc0009578.1_g000003 Rmu_sc0029942.1_g000001 Rmu_sc0036151.1_g000001 Rmu_sc0036151.1_g000002 Rmu_sc0037719.1_g000001 Rmu_sc0042877.1_g000001 Rmu_ssc0000481.1_g000003
rosa_roxburghii Rroxscaffold_7G00159740 Rroxscaffold_7G00159750 Rroxscaffold_7G00159760 Rroxscaffold_7G00159770 Rroxscaffold_7G00210810
rosa_rugosa Rorug05G0552200 Rorug05G0552300 Rorug05G0552400
rosa_samantha Rh3CG081000 Rh6AG069300 Rh6AG481300 Rh6AG481600 Rh6BG062000 Rh6BG490400 Rh6BG490500 Rh6BG490600 Rh6CG062100 Rh6CG495700 Rh6CG495900 Rh6DG059100 Rh6DG481600 Rh6DG481700 Rh6DG481800
rosa_wichuraiana Rw6G006090 Rw6G041930 Rw6G041940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 499
AccI GTMKAC 1 cut(s) 805
AccII CGCG 4 cut(s) 43, 45, 50, 111
AciI CCGC 5 cut(s) 48, 50, 65, 68, 71
AcoI YGGCCR 2 cut(s) 18, 78
AcsI RAATTY 5 cut(s) 333, 404, 641, 884, 973
AfiI CCNNNNNNNGG 1 cut(s) 499
AflII CTTAAG 1 cut(s) 676
AflIII ACRYGT 2 cut(s) 553, 746
AgsI TTSAA 3 cut(s) 513, 647, 740
AluBI AGCT 6 cut(s) 94, 209, 496, 720, 861, 905
AluI AGCT 6 cut(s) 94, 209, 496, 720, 861, 905
Alw21I GWGCWC 1 cut(s) 120
AlwNI CAGNNNCTG 1 cut(s) 94
AoxI GGCC 6 cut(s) 18, 72, 78, 156, 248, 308
ApeKI GCWGC 2 cut(s) 88, 91
ApoI RAATTY 5 cut(s) 333, 404, 641, 884, 973
ArsI GACNNNNNNTTYG 2 cut(s) 802, 834
AseI ATTAAT 3 cut(s) 351, 543, 932
AspLEI GCGC 6 cut(s) 32, 45, 47, 111, 113, 187
AspS9I GGNCC 2 cut(s) 248, 669
AsuHPI GGTGA 2 cut(s) 121, 616
AsuII TTCGAA 1 cut(s) 971
AvaII GGWCC 1 cut(s) 669
Bbv12I GWGCWC 1 cut(s) 120
BbvI GCAGC 2 cut(s) 100, 103
BccI CCATC 1 cut(s) 607
BceAI ACGGC 2 cut(s) 98, 254
BclI TGATCA 2 cut(s) 474, 606
BfmI CTRYAG 1 cut(s) 806
BfrI CTTAAG 1 cut(s) 676
BglII AGATCT 1 cut(s) 124
BisI GCNGC 7 cut(s) 48, 51, 66, 69, 72, 89, 92
BlsI GCNGC 7 cut(s) 49, 52, 67, 70, 73, 90, 93
Bme18I GGWCC 1 cut(s) 669
BmgT120I GGNCC 2 cut(s) 248, 669
BmiI GGNNCC 1 cut(s) 297
BmsI GCATC 1 cut(s) 334
BpmI CTGGAG 1 cut(s) 476
Bpu14I TTCGAA 1 cut(s) 971
BpuEI CTTGAG 1 cut(s) 684
BsaJI CCNNGG 5 cut(s) 48, 75, 81, 236, 956
Bsc4I CCNNNNNNNGG 1 cut(s) 499
Bse3DI GCAATG 2 cut(s) 311, 519
BseDI CCNNGG 5 cut(s) 48, 75, 81, 236, 956
BseGI GGATG 3 cut(s) 349, 565, 697
BseLI CCNNNNNNNGG 1 cut(s) 499
BseMI GCAATG 2 cut(s) 311, 519
BseMII CTCAG 1 cut(s) 989
BsePI GCGCGC 2 cut(s) 43, 109
BseRI GAGGAG 3 cut(s) 73, 98, 551
BseXI GCAGC 2 cut(s) 100, 103
Bsh1236I CGCG 4 cut(s) 43, 45, 50, 111
BshFI GGCC 6 cut(s) 20, 74, 80, 158, 250, 310
BsiHKAI GWGCWC 1 cut(s) 120
BslI CCNNNNNNNGG 1 cut(s) 499
BsmI GAATGC 1 cut(s) 746
BsnI GGCC 6 cut(s) 20, 74, 80, 158, 250, 310
Bsp119I TTCGAA 1 cut(s) 971
Bsp1286I GDGCHC 1 cut(s) 120
Bsp143I GATC 5 cut(s) 124, 474, 606, 941, 987
BspACI CCGC 5 cut(s) 48, 50, 65, 68, 71
BspANI GGCC 6 cut(s) 20, 74, 80, 158, 250, 310
BspCNI CTCAG 1 cut(s) 990
BspFNI CGCG 4 cut(s) 43, 45, 50, 111
BspLI GGNNCC 1 cut(s) 297
BspT104I TTCGAA 1 cut(s) 971
BspTI CTTAAG 1 cut(s) 676
BsrDI GCAATG 2 cut(s) 311, 519
BssECI CCNNGG 5 cut(s) 48, 75, 81, 236, 956
BssHII GCGCGC 2 cut(s) 43, 109
BssMI GATC 5 cut(s) 124, 474, 606, 941, 987
BssT1I CCWWGG 2 cut(s) 75, 956
Bst4CI ACNGT 3 cut(s) 16, 664, 715
Bst6I CTCTTC 2 cut(s) 50, 432
BstAFI CTTAAG 1 cut(s) 676
BstBI TTCGAA 1 cut(s) 971
BstC8I GCNNGC 4 cut(s) 45, 96, 111, 788
BstDEI CTNAG 2 cut(s) 102, 998
BstDSI CCRYGG 2 cut(s) 48, 236
BstF5I GGATG 3 cut(s) 349, 565, 697
BstFNI CGCG 4 cut(s) 43, 45, 50, 111
BstHHI GCGC 6 cut(s) 32, 45, 47, 111, 113, 187
BstKTI GATC 5 cut(s) 127, 477, 609, 944, 990
BstMBI GATC 5 cut(s) 124, 474, 606, 941, 987
BstMWI GCNNNNNNNGC 5 cut(s) 71, 77, 115, 247, 353
BstNSI RCATGY 4 cut(s) 557, 591, 750, 985
BstSFI CTRYAG 1 cut(s) 806
BstUI CGCG 4 cut(s) 43, 45, 50, 111
BstV1I GCAGC 2 cut(s) 100, 103
BstX2I RGATCY 1 cut(s) 124
BstYI RGATCY 1 cut(s) 124
BsuRI GGCC 6 cut(s) 20, 74, 80, 158, 250, 310
BtgI CCRYGG 2 cut(s) 48, 236
BtsCI GGATG 3 cut(s) 349, 565, 697
BtsIMutI CAGTG 1 cut(s) 12
Cac8I GCNNGC 4 cut(s) 45, 96, 111, 788
CaiI CAGNNNCTG 1 cut(s) 94
CfoI GCGC 6 cut(s) 32, 45, 47, 111, 113, 187
Cfr13I GGNCC 2 cut(s) 248, 669
Cfr42I CCGCGG 1 cut(s) 51
CviAII CATG 6 cut(s) 325, 554, 574, 588, 747, 982
DdeI CTNAG 2 cut(s) 102, 998
DpnI GATC 5 cut(s) 126, 476, 608, 943, 989
DpnII GATC 5 cut(s) 124, 474, 606, 941, 987
DraI TTTAAA 1 cut(s) 409
EaeI YGGCCR 2 cut(s) 18, 78
Eam1104I CTCTTC 2 cut(s) 50, 432
EarI CTCTTC 2 cut(s) 50, 432
Eco130I CCWWGG 2 cut(s) 75, 956
Eco32I GATATC 2 cut(s) 265, 625
Eco47I GGWCC 1 cut(s) 669
EcoRI GAATTC 1 cut(s) 333
EcoRV GATATC 2 cut(s) 265, 625
EcoT14I CCWWGG 2 cut(s) 75, 956
ErhI CCWWGG 2 cut(s) 75, 956
FaeI CATG 6 cut(s) 328, 557, 577, 591, 750, 985
FatI CATG 6 cut(s) 324, 553, 573, 587, 746, 981
FbaI TGATCA 2 cut(s) 474, 606
FblI GTMKAC 1 cut(s) 805
Fnu4HI GCNGC 7 cut(s) 48, 51, 66, 69, 72, 89, 92
FokI GGATG 3 cut(s) 356, 572, 704
Fsp4HI GCNGC 7 cut(s) 48, 51, 66, 69, 72, 89, 92
GlaI GCGC 6 cut(s) 31, 44, 46, 110, 112, 186
GluI GCNGC 7 cut(s) 48, 51, 66, 69, 72, 89, 92
GsuI CTGGAG 1 cut(s) 476
HaeIII GGCC 6 cut(s) 20, 74, 80, 158, 250, 310
HhaI GCGC 6 cut(s) 32, 45, 47, 111, 113, 187
Hin1II CATG 6 cut(s) 328, 557, 577, 591, 750, 985
Hin6I GCGC 6 cut(s) 30, 43, 45, 109, 111, 185
HinP1I GCGC 6 cut(s) 30, 43, 45, 109, 111, 185
HindIII AAGCTT 1 cut(s) 859
HinfI GANTC 5 cut(s) 179, 487, 655, 811, 952
HphI GGTGA 2 cut(s) 121, 616
Hpy166II GTNNAC 2 cut(s) 687, 806
Hpy188I TCNGA 8 cut(s) 36, 122, 178, 262, 339, 669, 853, 999
Hpy188III TCNNGA 3 cut(s) 419, 610, 737
Hpy8I GTNNAC 2 cut(s) 687, 806
Hpy99I CGWCG 2 cut(s) 149, 152
HpyAV CCTTC 4 cut(s) 334, 682, 903, 1000
HpyCH4III ACNGT 3 cut(s) 16, 664, 715
HpyCH4IV ACGT 2 cut(s) 144, 220
HpyCH4V TGCA 6 cut(s) 140, 398, 591, 744, 823, 926
HpyF10VI GCNNNNNNNGC 5 cut(s) 71, 77, 115, 247, 353
HpyF3I CTNAG 2 cut(s) 102, 998
HpySE526I ACGT 2 cut(s) 144, 220
Hsp92II CATG 6 cut(s) 328, 557, 577, 591, 750, 985
HspAI GCGC 6 cut(s) 30, 43, 45, 109, 111, 185
Ksp22I TGATCA 2 cut(s) 474, 606
KspI CCGCGG 1 cut(s) 51
Kzo9I GATC 5 cut(s) 124, 474, 606, 941, 987
LmnI GCTCC 2 cut(s) 37, 85
LpnPI CCDG 7 cut(s) 80, 200, 330, 432, 506, 804, 902
Lsp1109I GCAGC 2 cut(s) 100, 103
LweI GCATC 1 cut(s) 334
MaeII ACGT 2 cut(s) 144, 220
MaeIII GTNAC 1 cut(s) 221
MalI GATC 5 cut(s) 126, 476, 608, 943, 989
MboI GATC 5 cut(s) 124, 474, 606, 941, 987
MboII GAAGA 4 cut(s) 67, 269, 407, 419
MflI RGATCY 1 cut(s) 124
MhlI GDGCHC 1 cut(s) 120
MlyI GAGTC 1 cut(s) 805
MmeI TCCRAC 1 cut(s) 846
MseI TTAA 8 cut(s) 351, 408, 543, 677, 767, 857, 932, 1018
MslI CAYNNNNRTG 1 cut(s) 558
MspA1I CMGCKG 2 cut(s) 50, 94
MspCI CTTAAG 1 cut(s) 676
Mva1269I GAATGC 1 cut(s) 746
MvnI CGCG 4 cut(s) 43, 45, 50, 111
MwoI GCNNNNNNNGC 5 cut(s) 71, 77, 115, 247, 353
NdeII GATC 5 cut(s) 124, 474, 606, 941, 987
NlaIII CATG 6 cut(s) 328, 557, 577, 591, 750, 985
NlaIV GGNNCC 1 cut(s) 297
NmeAIII GCCGAG 2 cut(s) 46, 106
NmuCI GTSAC 1 cut(s) 221
NspI RCATGY 4 cut(s) 557, 591, 750, 985
NspV TTCGAA 1 cut(s) 971
PauI GCGCGC 2 cut(s) 43, 109
PciI ACATGT 2 cut(s) 553, 746
PctI GAATGC 1 cut(s) 746
PfeI GAWTC 4 cut(s) 179, 487, 655, 952
PflMI CCANNNNNTGG 1 cut(s) 499
PkrI GCNGC 7 cut(s) 49, 52, 67, 70, 73, 90, 93
PleI GAGTC 1 cut(s) 805
PpsI GAGTC 1 cut(s) 805
PscI ACATGT 2 cut(s) 553, 746
PshBI ATTAAT 3 cut(s) 351, 543, 932
PspN4I GGNNCC 1 cut(s) 297
PspPI GGNCC 2 cut(s) 248, 669
PstNI CAGNNNCTG 1 cut(s) 94
PsuI RGATCY 1 cut(s) 124
PteI GCGCGC 2 cut(s) 43, 109
PvuII CAGCTG 1 cut(s) 94
RseI CAYNNNNRTG 1 cut(s) 558
SacII CCGCGG 1 cut(s) 51
SaqAI TTAA 8 cut(s) 351, 408, 543, 677, 767, 857, 932, 1018
SatI GCNGC 7 cut(s) 48, 51, 66, 69, 72, 89, 92
Sau3AI GATC 5 cut(s) 124, 474, 606, 941, 987
Sau96I GGNCC 2 cut(s) 248, 669
SchI GAGTC 1 cut(s) 805
SduI GDGCHC 1 cut(s) 120
SfaNI GCATC 1 cut(s) 334
SfcI CTRYAG 1 cut(s) 806
Sfr303I CCGCGG 1 cut(s) 51
SfuI TTCGAA 1 cut(s) 971
SgrBI CCGCGG 1 cut(s) 51
SinI GGWCC 1 cut(s) 669
SmiMI CAYNNNNRTG 1 cut(s) 558
SmlI CTYRAG 2 cut(s) 676, 699
SmoI CTYRAG 2 cut(s) 676, 699
SsiI CCGC 5 cut(s) 48, 50, 65, 68, 71
SspI AATATT 1 cut(s) 458
StyI CCWWGG 2 cut(s) 75, 956
TaaI ACNGT 3 cut(s) 16, 664, 715
TaiI ACGT 2 cut(s) 147, 223
TaqI TCGA 2 cut(s) 464, 971
TauI GCSGC 5 cut(s) 50, 53, 68, 71, 74
TfiI GAWTC 4 cut(s) 179, 487, 655, 952
Tru1I TTAA 8 cut(s) 351, 408, 543, 677, 767, 857, 932, 1018
Tru9I TTAA 8 cut(s) 351, 408, 543, 677, 767, 857, 932, 1018
TscAI CASTG 1 cut(s) 19
TseFI GTSAC 1 cut(s) 221
TseI GCWGC 2 cut(s) 88, 91
Tsp45I GTSAC 1 cut(s) 221
TspDTI ATGAA 7 cut(s) 417, 419, 482, 508, 897, 965, 1019
TspGWI ACGGA 2 cut(s) 217, 704
TspRI CASTG 1 cut(s) 19
Van91I CCANNNNNTGG 1 cut(s) 499
Vha464I CTTAAG 1 cut(s) 676
VpaK11BI GGWCC 1 cut(s) 669
VspI ATTAAT 3 cut(s) 351, 543, 932
XapI RAATTY 5 cut(s) 333, 404, 641, 884, 973
XceI RCATGY 4 cut(s) 557, 591, 750, 985
XmiI GTMKAC 1 cut(s) 805
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.