FvH4_2g04770

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000541
Physical Location & Seq
Forward (+)
3704138 .. 3706810
2673 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g04770.t2

Sequence Viewer

Length: 1059 bp
ATGCACGACGAAGGAAACAGCGTCTACGCCACGCGCTCGACGAAGAAGCGAGCCTCGGCGGCGGAGGCCCTGAAAGCTCCGGCGTCCAAGAAGCATCGATCAGTACTCGGAGAGATCACCAACTCGCCGGAACTGGCCTCGGCTCCGAAGAAACCGAAAATCGATAAGGAAGAGGAAGAAGAGGAGGAGGGACTGAAGACGGAGATCGGTGTGAACTCGATTGATCCGGTCAAATGTGCTTACTCGCCTTCTATGTATAAGCATCTTCAGAAATTGGAGGTGGAGGGGAAGAGTAGACCTTTCTGCGGTTACATGGAGAAGGTGCAGAATGGCATTTCAGAACACATGCGAGAAGTCCTGGTAGATTGGTTGGTGGAGGTTGCGGAGGAATACAAGTTTGTTTCAGACACCCTTTATCTTACCGTATCATATATTGACAGATACCTTTCTTCACACGTTATCAGCAAGAACAAGCTACAGCTTCTTGGTGTTGCGTGCATGTTTATTGCCTCGAAGTATGAAGAGATTTGTCCTCCACGCATTGAAGAGTTCTGCTATATAACTGATAATACCTACATGATAGAAGAGGTGTTGGAAATGGAGAAACATGTACTCAAATGCTTGAACTTTGAGACTTATACTCCCACAACAAAGAACTTTCTCAGAATCTTCGCGAGAGCTGCTCAAGAGAATTCCAAATCTTCGGATCTGCGGTTTGAATTCTTGGGCGGTTATCTTGCCGAACTAAGTTTGCTTGATTACTGCTGTGTTCGATTCCTACCATCAATTGTTGCTGCATCAGCGGTTTTTCTTTCTAAGTTCACATTTCAGCCTGAGGTTCACCCCTGGAGTTGGGACTTGCAATGCTATTCTGGTTATAAACCATCGGACTTACAAGATTGTATCCTTGCCCTTCATGACTTGCAGCTGAATAAAAGAGGATGCAATTTGAGAGCTGTTAGAGATAAATATATGCAAGCAAAGTTCAAGTGCGTAGCAACATTTTCTTCACACTCGGAGATTCCTGCATTTTATTTTGAGCAATCGACTAAGTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

353

Amino Acids

40.29

Weight (kDa)

6.05

Isoelectric Point (pI)

55.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 85 - 211 6.2e-46 Cyclin, N-terminal domain
Cyclin_C PF02984 215 - 330 5.7e-29 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000541)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47210 AT1G47210 AT1G47220 AT1G47230 AT1G47230 AT2G01310 AT5G43080 AT5G43080
fragaria_vesca FvH4_2g04770 FvH4_2g04770 FvH4_2g04770 FvH4_2g33510 FvH4_2g33510 FvH4_2g33510 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33530 FvH4_2g33530
malus_domestica MD05G1092000.v1.1 MD08G1091000.v1.1 MD08G1091200.v1.1 MD10G1100200.v1.1 MD10G1100700.v1.1 MD12G1105600.v1.1 MD15G1075100.v1.1 MD15G1075200.v1.1
prunus_persica Prupe.1G428000_v2.0.a1 Prupe.1G428100_v2.0.a1 Prupe.4G285800_v2.0.a1 Prupe.8G137700_v2.0.a1 Prupe.8G137700_v2.0.a1
pyrus_communis pycom05g09170 pycom08g07360 pycom08g07370 pycom15g07000 pycom15g07020
rosa_chinensis RchiOBHm_Chr3g0465621 RchiOBHm_Chr6g0254421 RchiOBHm_Chr6g0254451 RchiOBHm_Chr6g0308961 RchiOBHm_Chr6g0308971 RchiOBHm_Chr6g0308991 RchiOBHm_Chr7g0190851
rosa_laevigata RLG00000003915 RLG00000010598 RLG00000010599 RLG00000010600 RLG00000014913
rosa_multiflora Rmu_sc0009578.1_g000002 Rmu_sc0009578.1_g000003 Rmu_sc0029942.1_g000001 Rmu_sc0036151.1_g000001 Rmu_sc0036151.1_g000002 Rmu_sc0037719.1_g000001 Rmu_sc0042877.1_g000001 Rmu_ssc0000481.1_g000003
rosa_roxburghii Rroxscaffold_7G00159740 Rroxscaffold_7G00159750 Rroxscaffold_7G00159760 Rroxscaffold_7G00159770 Rroxscaffold_7G00210810
rosa_rugosa Rorug05G0552200 Rorug05G0552300 Rorug05G0552400
rosa_samantha Rh3CG081000 Rh6AG069300 Rh6AG481300 Rh6AG481600 Rh6BG062000 Rh6BG490400 Rh6BG490500 Rh6BG490600 Rh6CG062100 Rh6CG495700 Rh6CG495900 Rh6DG059100 Rh6DG481600 Rh6DG481700 Rh6DG481800
rosa_wichuraiana Rw6G006090 Rw6G041930 Rw6G041940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 879
AccI GTMKAC 2 cut(s) 24, 295
AccII CGCG 2 cut(s) 34, 674
AciI CCGC 7 cut(s) 59, 62, 306, 383, 712, 729, 803
AclWI GGATC 2 cut(s) 218, 714
AcsI RAATTY 2 cut(s) 691, 719
AcuI CTGAAG 2 cut(s) 215, 251
AcyI GRCGYC 1 cut(s) 83
AfaI GTAC 2 cut(s) 105, 612
AfiI CCNNNNNNNGG 2 cut(s) 305, 852
AflIII ACRYGT 2 cut(s) 454, 607
AgsI TTSAA 4 cut(s) 545, 625, 719, 988
AjnI CCWGG 2 cut(s) 357, 845
AluBI AGCT 6 cut(s) 77, 475, 481, 680, 928, 956
AluI AGCT 6 cut(s) 77, 475, 481, 680, 928, 956
Alw26I GTCTC 1 cut(s) 626
AlwI GGATC 2 cut(s) 218, 714
AoxI GGCC 2 cut(s) 66, 135
ApeKI GCWGC 3 cut(s) 680, 794, 925
ApoI RAATTY 2 cut(s) 691, 719
AspLEI GCGC 1 cut(s) 36
AspS9I GGNCC 1 cut(s) 67
AsuHPI GGTGA 2 cut(s) 109, 833
AxyI CCTNAGG 1 cut(s) 834
BbsI GAAGAC 1 cut(s) 203
BbvI GCAGC 3 cut(s) 667, 781, 937
BccI CCATC 2 cut(s) 790, 892
BciT130I CCWGG 2 cut(s) 359, 847
BciVI GTATCC 1 cut(s) 914
BcoDI GTCTC 1 cut(s) 626
BfaI CTAG 1 cut(s) 1057
BfmI CTRYAG 1 cut(s) 476
BfuI GTATCC 1 cut(s) 914
BglI GCCNNNNNGGC 1 cut(s) 59
BisI GCNGC 4 cut(s) 60, 681, 795, 926
BlsI GCNGC 4 cut(s) 61, 682, 796, 927
BmcAI AGTACT 1 cut(s) 105
Bme1390I CCNGG 2 cut(s) 359, 847
BmgT120I GGNCC 1 cut(s) 67
BmiI GGNNCC 1 cut(s) 144
BmrFI CCNGG 2 cut(s) 359, 847
BmsI GCATC 4 cut(s) 103, 271, 806, 932
BpiI GAAGAC 1 cut(s) 203
BplI GAGNNNNNCTC 2 cut(s) 667, 699
BpmI CTGGAG 1 cut(s) 868
BpuEI CTTGAG 1 cut(s) 669
Bsa29I ATCGAT 2 cut(s) 97, 162
BsaHI GRCGYC 1 cut(s) 83
BsaJI CCNNGG 3 cut(s) 54, 138, 845
BsaWI WCCGGW 1 cut(s) 226
BsaXI ACNNNNNCTCC 2 cut(s) 625, 655
Bsc4I CCNNNNNNNGG 2 cut(s) 305, 852
Bse1I ACTGG 1 cut(s) 138
Bse21I CCTNAGG 1 cut(s) 834
Bse3DI GCAATG 1 cut(s) 869
BseBI CCWGG 2 cut(s) 359, 847
BseCI ATCGAT 2 cut(s) 97, 162
BseDI CCNNGG 3 cut(s) 54, 138, 845
BseGI GGATG 1 cut(s) 947
BseLI CCNNNNNNNGG 2 cut(s) 305, 852
BseMI GCAATG 1 cut(s) 869
BseMII CTCAG 2 cut(s) 676, 825
BseNI ACTGG 1 cut(s) 138
BseRI GAGGAG 2 cut(s) 197, 200
BseXI GCAGC 3 cut(s) 667, 781, 937
BsgI GTGCAG 1 cut(s) 344
Bsh1236I CGCG 2 cut(s) 34, 674
BshFI GGCC 2 cut(s) 68, 137
BshVI ATCGAT 2 cut(s) 97, 162
BsiSI CCGG 3 cut(s) 80, 128, 227
BslFI GGGAC 2 cut(s) 204, 869
BslI CCNNNNNNNGG 2 cut(s) 305, 852
BsmAI GTCTC 1 cut(s) 626
BsmFI GGGAC 2 cut(s) 204, 869
BsnI GGCC 2 cut(s) 68, 137
Bsp143I GATC 5 cut(s) 98, 114, 204, 223, 706
Bsp68I TCGCGA 1 cut(s) 674
BspACI CCGC 7 cut(s) 59, 62, 306, 383, 712, 729, 803
BspANI GGCC 2 cut(s) 68, 137
BspCNI CTCAG 2 cut(s) 675, 826
BspDI ATCGAT 2 cut(s) 97, 162
BspFNI CGCG 2 cut(s) 34, 674
BspHI TCATGA 1 cut(s) 916
BspLI GGNNCC 1 cut(s) 144
BspPI GGATC 2 cut(s) 218, 714
BsrDI GCAATG 1 cut(s) 869
BsrI ACTGG 1 cut(s) 138
BssECI CCNNGG 3 cut(s) 54, 138, 845
BssMI GATC 5 cut(s) 98, 114, 204, 223, 706
BssNI GRCGYC 1 cut(s) 83
Bst2UI CCWGG 2 cut(s) 359, 847
Bst4CI ACNGT 1 cut(s) 424
Bst6I CTCTTC 6 cut(s) 165, 174, 284, 516, 540, 579
BstACI GRCGYC 1 cut(s) 83
BstC8I GCNNGC 3 cut(s) 51, 496, 978
BstDEI CTNAG 5 cut(s) 662, 746, 816, 834, 1050
BstF5I GGATG 1 cut(s) 947
BstFNI CGCG 2 cut(s) 34, 674
BstHHI GCGC 1 cut(s) 36
BstKTI GATC 5 cut(s) 101, 117, 207, 226, 709
BstMAI GTCTC 1 cut(s) 626
BstMBI GATC 5 cut(s) 98, 114, 204, 223, 706
BstMWI GCNNNNNNNGC 5 cut(s) 59, 65, 74, 680, 800
BstNI CCWGG 2 cut(s) 359, 847
BstNSI RCATGY 3 cut(s) 349, 502, 611
BstSCI CCNGG 2 cut(s) 357, 845
BstSFI CTRYAG 1 cut(s) 476
BstUI CGCG 2 cut(s) 34, 674
BstV1I GCAGC 3 cut(s) 667, 781, 937
BstV2I GAAGAC 1 cut(s) 203
BstX2I RGATCY 1 cut(s) 706
BstYI RGATCY 1 cut(s) 706
Bsu15I ATCGAT 2 cut(s) 97, 162
Bsu36I CCTNAGG 1 cut(s) 834
BsuI GTATCC 1 cut(s) 914
BsuRI GGCC 2 cut(s) 68, 137
BsuTUI ATCGAT 2 cut(s) 97, 162
BtsCI GGATG 1 cut(s) 947
BtuMI TCGCGA 1 cut(s) 674
Cac8I GCNNGC 3 cut(s) 51, 496, 978
CciI TCATGA 1 cut(s) 916
CfoI GCGC 1 cut(s) 36
Cfr13I GGNCC 1 cut(s) 67
ClaI ATCGAT 2 cut(s) 97, 162
CseI GACGC 2 cut(s) 10, 72
Csp6I GTAC 2 cut(s) 104, 611
CviAII CATG 6 cut(s) 313, 346, 499, 577, 608, 917
CviQI GTAC 2 cut(s) 104, 611
DdeI CTNAG 5 cut(s) 662, 746, 816, 834, 1050
DpnI GATC 5 cut(s) 100, 116, 206, 225, 708
DpnII GATC 5 cut(s) 98, 114, 204, 223, 706
Eam1104I CTCTTC 6 cut(s) 165, 174, 284, 516, 540, 579
EarI CTCTTC 6 cut(s) 165, 174, 284, 516, 540, 579
EciI GGCGGA 1 cut(s) 77
Eco57I CTGAAG 2 cut(s) 215, 251
Eco81I CCTNAGG 1 cut(s) 834
EcoO109I RGGNCCY 1 cut(s) 67
EcoRI GAATTC 2 cut(s) 691, 719
EcoRII CCWGG 2 cut(s) 357, 845
FaeI CATG 6 cut(s) 316, 349, 502, 580, 611, 920
FaqI GGGAC 2 cut(s) 204, 869
FatI CATG 6 cut(s) 312, 345, 498, 576, 607, 916
FblI GTMKAC 2 cut(s) 24, 295
Fnu4HI GCNGC 4 cut(s) 60, 681, 795, 926
FokI GGATG 1 cut(s) 954
Fsp4HI GCNGC 4 cut(s) 60, 681, 795, 926
FspBI CTAG 1 cut(s) 1057
GlaI GCGC 1 cut(s) 35
GluI GCNGC 4 cut(s) 60, 681, 795, 926
GsuI CTGGAG 1 cut(s) 868
HaeIII GGCC 2 cut(s) 68, 137
HapII CCGG 3 cut(s) 80, 128, 227
HgaI GACGC 2 cut(s) 10, 72
HhaI GCGC 1 cut(s) 36
Hin1I GRCGYC 1 cut(s) 83
Hin1II CATG 6 cut(s) 316, 349, 502, 580, 611, 920
Hin6I GCGC 1 cut(s) 34
HinP1I GCGC 1 cut(s) 34
HinfI GANTC 3 cut(s) 666, 774, 1021
HpaII CCGG 3 cut(s) 80, 128, 227
HphI GGTGA 2 cut(s) 109, 833
Hpy166II GTNNAC 5 cut(s) 25, 214, 296, 822, 841
Hpy188I TCNGA 9 cut(s) 110, 147, 270, 340, 406, 665, 706, 889, 1018
Hpy188III TCNNGA 3 cut(s) 673, 686, 917
Hpy8I GTNNAC 5 cut(s) 25, 214, 296, 822, 841
Hpy99I CGWCG 2 cut(s) 11, 43
HpyAV CCTTC 4 cut(s) 5, 258, 313, 923
HpyCH4III ACNGT 1 cut(s) 424
HpyCH4IV ACGT 1 cut(s) 456
HpyCH4V TGCA 9 cut(s) 4, 325, 498, 797, 862, 925, 945, 976, 1028
HpyF10VI GCNNNNNNNGC 5 cut(s) 59, 65, 74, 680, 800
HpyF3I CTNAG 5 cut(s) 662, 746, 816, 834, 1050
HpySE526I ACGT 1 cut(s) 456
Hsp92I GRCGYC 1 cut(s) 83
Hsp92II CATG 6 cut(s) 316, 349, 502, 580, 611, 920
HspAI GCGC 1 cut(s) 34
Kzo9I GATC 5 cut(s) 98, 114, 204, 223, 706
LmnI GCTCC 2 cut(s) 82, 148
Lsp1109I GCAGC 3 cut(s) 667, 781, 937
LweI GCATC 4 cut(s) 103, 271, 806, 932
MaeI CTAG 1 cut(s) 1057
MaeII ACGT 1 cut(s) 456
MaeIII GTNAC 1 cut(s) 308
MalI GATC 5 cut(s) 100, 116, 206, 225, 708
MboI GATC 5 cut(s) 98, 114, 204, 223, 706
MfeI CAATTG 1 cut(s) 786
MflI RGATCY 1 cut(s) 706
MluCI AATT 5 cut(s) 272, 691, 719, 786, 946
MmeI TCCRAC 1 cut(s) 573
MspA1I CMGCKG 2 cut(s) 803, 928
MspI CCGG 3 cut(s) 80, 128, 227
MspR9I CCNGG 2 cut(s) 359, 847
MunI CAATTG 1 cut(s) 786
MvaI CCWGG 2 cut(s) 359, 847
MvnI CGCG 2 cut(s) 34, 674
MwoI GCNNNNNNNGC 5 cut(s) 59, 65, 74, 680, 800
NdeII GATC 5 cut(s) 98, 114, 204, 223, 706
NlaIII CATG 6 cut(s) 316, 349, 502, 580, 611, 920
NlaIV GGNNCC 1 cut(s) 144
NmeAIII GCCGAG 2 cut(s) 35, 119
NruI TCGCGA 1 cut(s) 674
NspI RCATGY 3 cut(s) 349, 502, 611
PagI TCATGA 1 cut(s) 916
PciI ACATGT 1 cut(s) 607
PcsI WCGNNNNNNNCGW 1 cut(s) 38
PfeI GAWTC 3 cut(s) 666, 774, 1021
PkrI GCNGC 4 cut(s) 61, 682, 796, 927
PscI ACATGT 1 cut(s) 607
PsiI TTATAA 1 cut(s) 879
Psp6I CCWGG 2 cut(s) 357, 845
PspGI CCWGG 2 cut(s) 357, 845
PspN4I GGNNCC 1 cut(s) 144
PspPI GGNCC 1 cut(s) 67
PsuI RGATCY 1 cut(s) 706
PvuII CAGCTG 1 cut(s) 928
RruI TCGCGA 1 cut(s) 674
RsaI GTAC 2 cut(s) 105, 612
RsaNI GTAC 2 cut(s) 104, 611
SatI GCNGC 4 cut(s) 60, 681, 795, 926
Sau3AI GATC 5 cut(s) 98, 114, 204, 223, 706
Sau96I GGNCC 1 cut(s) 67
ScaI AGTACT 1 cut(s) 105
ScrFI CCNGG 2 cut(s) 359, 847
SfaNI GCATC 4 cut(s) 103, 271, 806, 932
SfcI CTRYAG 1 cut(s) 476
SmlI CTYRAG 1 cut(s) 684
SmoI CTYRAG 1 cut(s) 684
Sse9I AATT 5 cut(s) 272, 691, 719, 786, 946
SsiI CCGC 7 cut(s) 59, 62, 306, 383, 712, 729, 803
SspMI CTAG 1 cut(s) 1057
StyD4I CCNGG 2 cut(s) 357, 845
TaaI ACNGT 1 cut(s) 424
TaiI ACGT 1 cut(s) 459
TaqI TCGA 7 cut(s) 38, 97, 162, 218, 512, 772, 1046
TasI AATT 5 cut(s) 272, 691, 719, 786, 946
TatI WGTACW 2 cut(s) 103, 610
TauI GCSGC 1 cut(s) 62
TfiI GAWTC 3 cut(s) 666, 774, 1021
TseI GCWGC 3 cut(s) 680, 794, 925
TspDTI ATGAA 2 cut(s) 534, 905
TspGWI ACGGA 1 cut(s) 215
XapI RAATTY 2 cut(s) 691, 719
XceI RCATGY 3 cut(s) 349, 502, 611
XmiI GTMKAC 2 cut(s) 24, 295
XspI CTAG 1 cut(s) 1057
ZrmI AGTACT 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.