Rmu_sc0036151.1_g000002

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0036151.1
OG0000541
Physical Location & Seq
Reverse (-)
8276 .. 10302
2027 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0036151.1_g000002.1.cds

Sequence Viewer

Length: 1071 bp
atggcttctttcactgtggccgagaaatgcgctccgcttacgcgcgccgcggcgaagaggagggcggcggcggccttggccgaggagcagcagctggcgactaagaagcgcgccgtgctcggagatctcaccaactttgcaaacgtcgtcgttttggcctcaaaaaaccccaattccgattctgcgctaaagaaacccaaacggagagctgtgctggaacgtgacaatgatgacccacggctttgtgggccttatgcttctgatatctatgcctatcttcgcagaatggaggtggaaccaaataggaggccattgcctgattacatggagagaattcagaaggatgctattaatgctaatatgagaggggttcttgtggattggttggtggaggttgcagatgaatttaaacttcttccagacactcttcatctatctatttcctatgttgataaatatttgtcgatgaatgtgatcaataggcagaatctccagctattgggagttgcttcaatgttcattgcctcaaagtatgaggagattaatcctccacatgtggatgaccttattgacatgacagaaaatacatgcagtaaagcagaggtgatcaagatggaggctgaaatcctcaaatccctcaaatttgaaatggggaatcctactgttccgaccttcttaagaaagtttacgggtgttgctcaagggaattatacaactcccaatttgcagtttgagttcttggtttcctaccttgcagagttaagcttgttggattacaaatgtgtgaaattcctgccttctatggtagcttcatcagttgttttccttgcaagattaatgattagatcaaagatgaatccttggtgttcaacattgcaacaatatactggatacattgcagctgatttgaaagattgtgttcttgtccttcatgacttgtacttgggtagaagaggaggattgttacaagttgtgcgagagaagtacagacagcatgagttcaaatatgtggcaaaccttccctgccctccagagctaccagctcctttgtttgataatgtgaaggcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

356

Amino Acids

40.25

Weight (kDa)

8.68

Isoelectric Point (pI)

37.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000541)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47210 AT1G47210 AT1G47220 AT1G47230 AT1G47230 AT2G01310 AT5G43080 AT5G43080
fragaria_vesca FvH4_2g04770 FvH4_2g04770 FvH4_2g04770 FvH4_2g33510 FvH4_2g33510 FvH4_2g33510 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33530 FvH4_2g33530
malus_domestica MD05G1092000.v1.1 MD08G1091000.v1.1 MD08G1091200.v1.1 MD10G1100200.v1.1 MD10G1100700.v1.1 MD12G1105600.v1.1 MD15G1075100.v1.1 MD15G1075200.v1.1
prunus_persica Prupe.1G428000_v2.0.a1 Prupe.1G428100_v2.0.a1 Prupe.4G285800_v2.0.a1 Prupe.8G137700_v2.0.a1 Prupe.8G137700_v2.0.a1
pyrus_communis pycom05g09170 pycom08g07360 pycom08g07370 pycom15g07000 pycom15g07020
rosa_chinensis RchiOBHm_Chr3g0465621 RchiOBHm_Chr6g0254421 RchiOBHm_Chr6g0254451 RchiOBHm_Chr6g0308961 RchiOBHm_Chr6g0308971 RchiOBHm_Chr6g0308991 RchiOBHm_Chr7g0190851
rosa_laevigata RLG00000003915 RLG00000010598 RLG00000010599 RLG00000010600 RLG00000014913
rosa_multiflora Rmu_sc0009578.1_g000002 Rmu_sc0009578.1_g000003 Rmu_sc0029942.1_g000001 Rmu_sc0036151.1_g000001 Rmu_sc0036151.1_g000002 Rmu_sc0037719.1_g000001 Rmu_sc0042877.1_g000001 Rmu_ssc0000481.1_g000003
rosa_roxburghii Rroxscaffold_7G00159740 Rroxscaffold_7G00159750 Rroxscaffold_7G00159760 Rroxscaffold_7G00159770 Rroxscaffold_7G00210810
rosa_rugosa Rorug05G0552200 Rorug05G0552300 Rorug05G0552400
rosa_samantha Rh3CG081000 Rh6AG069300 Rh6AG481300 Rh6AG481600 Rh6BG062000 Rh6BG490400 Rh6BG490500 Rh6BG490600 Rh6CG062100 Rh6CG495700 Rh6CG495900 Rh6DG059100 Rh6DG481600 Rh6DG481700 Rh6DG481800
rosa_wichuraiana Rw6G006090 Rw6G041930 Rw6G041940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 499
AccII CGCG 4 cut(s) 43, 45, 50, 111
AciI CCGC 6 cut(s) 35, 48, 50, 65, 68, 71
AcoI YGGCCR 2 cut(s) 18, 78
AcsI RAATTY 4 cut(s) 333, 404, 641, 788
AfaI GTAC 2 cut(s) 941, 986
AfiI CCNNNNNNNGG 1 cut(s) 499
AflII CTTAAG 1 cut(s) 676
AflIII ACRYGT 1 cut(s) 553
AgsI TTSAA 5 cut(s) 513, 647, 870, 910, 1003
AluBI AGCT 8 cut(s) 94, 209, 496, 765, 809, 902, 1036, 1043
AluI AGCT 8 cut(s) 94, 209, 496, 765, 809, 902, 1036, 1043
Alw21I GWGCWC 1 cut(s) 120
AlwNI CAGNNNCTG 1 cut(s) 94
AoxI GGCC 6 cut(s) 18, 72, 78, 156, 248, 308
ApeKI GCWGC 3 cut(s) 88, 91, 899
ApoI RAATTY 4 cut(s) 333, 404, 641, 788
AseI ATTAAT 3 cut(s) 351, 543, 836
AspLEI GCGC 6 cut(s) 32, 45, 47, 111, 113, 187
AspS9I GGNCC 1 cut(s) 248
AsuHPI GGTGA 2 cut(s) 121, 616
Bbv12I GWGCWC 1 cut(s) 120
BbvI GCAGC 3 cut(s) 100, 103, 911
BccI CCATC 1 cut(s) 607
BceAI ACGGC 2 cut(s) 98, 254
BciVI GTATCC 1 cut(s) 884
BclI TGATCA 2 cut(s) 474, 606
BfrI CTTAAG 1 cut(s) 676
BfuI GTATCC 1 cut(s) 884
BglII AGATCT 1 cut(s) 124
BisI GCNGC 8 cut(s) 48, 51, 66, 69, 72, 89, 92, 900
BlsI GCNGC 8 cut(s) 49, 52, 67, 70, 73, 90, 93, 901
BmgT120I GGNCC 1 cut(s) 248
BmiI GGNNCC 1 cut(s) 297
BmsI GCATC 1 cut(s) 334
BpmI CTGGAG 2 cut(s) 476, 1014
BpuEI CTTGAG 1 cut(s) 684
BsaJI CCNNGG 5 cut(s) 48, 75, 81, 236, 860
Bsc4I CCNNNNNNNGG 1 cut(s) 499
Bse1I ACTGG 1 cut(s) 892
Bse3DI GCAATG 4 cut(s) 311, 519, 872, 894
BseDI CCNNGG 5 cut(s) 48, 75, 81, 236, 860
BseGI GGATG 2 cut(s) 349, 565
BseLI CCNNNNNNNGG 1 cut(s) 499
BseMI GCAATG 4 cut(s) 311, 519, 872, 894
BseNI ACTGG 1 cut(s) 892
BsePI GCGCGC 2 cut(s) 43, 109
BseRI GAGGAG 4 cut(s) 73, 98, 551, 969
BseXI GCAGC 3 cut(s) 100, 103, 911
Bsh1236I CGCG 4 cut(s) 43, 45, 50, 111
BshFI GGCC 6 cut(s) 20, 74, 80, 158, 250, 310
BsiHKAI GWGCWC 1 cut(s) 120
BslI CCNNNNNNNGG 1 cut(s) 499
BsnI GGCC 6 cut(s) 20, 74, 80, 158, 250, 310
Bsp1286I GDGCHC 1 cut(s) 120
Bsp143I GATC 4 cut(s) 124, 474, 606, 845
BspACI CCGC 6 cut(s) 35, 48, 50, 65, 68, 71
BspANI GGCC 6 cut(s) 20, 74, 80, 158, 250, 310
BspFNI CGCG 4 cut(s) 43, 45, 50, 111
BspHI TCATGA 1 cut(s) 931
BspLI GGNNCC 1 cut(s) 297
BspTI CTTAAG 1 cut(s) 676
BsrDI GCAATG 4 cut(s) 311, 519, 872, 894
BsrI ACTGG 1 cut(s) 892
BssECI CCNNGG 5 cut(s) 48, 75, 81, 236, 860
BssHII GCGCGC 2 cut(s) 43, 109
BssMI GATC 4 cut(s) 124, 474, 606, 845
BssT1I CCWWGG 2 cut(s) 75, 860
Bst4CI ACNGT 2 cut(s) 16, 664
Bst6I CTCTTC 3 cut(s) 50, 432, 946
BstAFI CTTAAG 1 cut(s) 676
BstC8I GCNNGC 3 cut(s) 45, 96, 111
BstDEI CTNAG 1 cut(s) 102
BstDSI CCRYGG 2 cut(s) 48, 236
BstF5I GGATG 2 cut(s) 349, 565
BstFNI CGCG 4 cut(s) 43, 45, 50, 111
BstHHI GCGC 6 cut(s) 32, 45, 47, 111, 113, 187
BstKTI GATC 4 cut(s) 127, 477, 609, 848
BstMBI GATC 4 cut(s) 124, 474, 606, 845
BstMWI GCNNNNNNNGC 5 cut(s) 71, 77, 115, 247, 353
BstNSI RCATGY 2 cut(s) 557, 591
BstUI CGCG 4 cut(s) 43, 45, 50, 111
BstV1I GCAGC 3 cut(s) 100, 103, 911
BstX2I RGATCY 1 cut(s) 124
BstYI RGATCY 1 cut(s) 124
BsuI GTATCC 1 cut(s) 884
BsuRI GGCC 6 cut(s) 20, 74, 80, 158, 250, 310
BtgI CCRYGG 2 cut(s) 48, 236
BtsCI GGATG 2 cut(s) 349, 565
BtsIMutI CAGTG 1 cut(s) 12
Cac8I GCNNGC 3 cut(s) 45, 96, 111
CaiI CAGNNNCTG 1 cut(s) 94
CciI TCATGA 1 cut(s) 931
CfoI GCGC 6 cut(s) 32, 45, 47, 111, 113, 187
Cfr13I GGNCC 1 cut(s) 248
Cfr42I CCGCGG 1 cut(s) 51
Csp6I GTAC 2 cut(s) 940, 985
CviAII CATG 7 cut(s) 325, 554, 574, 588, 932, 995, 1068
CviQI GTAC 2 cut(s) 940, 985
DdeI CTNAG 1 cut(s) 102
DpnI GATC 4 cut(s) 126, 476, 608, 847
DpnII GATC 4 cut(s) 124, 474, 606, 845
DraI TTTAAA 1 cut(s) 409
EaeI YGGCCR 2 cut(s) 18, 78
Eam1104I CTCTTC 3 cut(s) 50, 432, 946
EarI CTCTTC 3 cut(s) 50, 432, 946
Eco130I CCWWGG 2 cut(s) 75, 860
Eco32I GATATC 1 cut(s) 265
EcoRI GAATTC 1 cut(s) 333
EcoRV GATATC 1 cut(s) 265
EcoT14I CCWWGG 2 cut(s) 75, 860
ErhI CCWWGG 2 cut(s) 75, 860
FaeI CATG 7 cut(s) 328, 557, 577, 591, 935, 998, 1071
FatI CATG 7 cut(s) 324, 553, 573, 587, 931, 994, 1067
FbaI TGATCA 2 cut(s) 474, 606
Fnu4HI GCNGC 8 cut(s) 48, 51, 66, 69, 72, 89, 92, 900
FokI GGATG 2 cut(s) 356, 572
Fsp4HI GCNGC 8 cut(s) 48, 51, 66, 69, 72, 89, 92, 900
GlaI GCGC 6 cut(s) 31, 44, 46, 110, 112, 186
GluI GCNGC 8 cut(s) 48, 51, 66, 69, 72, 89, 92, 900
GsuI CTGGAG 2 cut(s) 476, 1014
HaeIII GGCC 6 cut(s) 20, 74, 80, 158, 250, 310
HhaI GCGC 6 cut(s) 32, 45, 47, 111, 113, 187
Hin1II CATG 7 cut(s) 328, 557, 577, 591, 935, 998, 1071
Hin6I GCGC 6 cut(s) 30, 43, 45, 109, 111, 185
HinP1I GCGC 6 cut(s) 30, 43, 45, 109, 111, 185
HindIII AAGCTT 1 cut(s) 763
HinfI GANTC 4 cut(s) 179, 487, 655, 856
HphI GGTGA 2 cut(s) 121, 616
Hpy166II GTNNAC 1 cut(s) 687
Hpy188I TCNGA 5 cut(s) 122, 178, 262, 339, 669
Hpy188III TCNNGA 4 cut(s) 419, 610, 932, 1031
Hpy8I GTNNAC 1 cut(s) 687
Hpy99I CGWCG 2 cut(s) 149, 152
HpyAV CCTTC 6 cut(s) 334, 682, 807, 938, 1028, 1057
HpyCH4III ACNGT 2 cut(s) 16, 664
HpyCH4IV ACGT 2 cut(s) 144, 220
HpyCH4V TGCA 8 cut(s) 140, 398, 591, 727, 755, 830, 877, 899
HpyF10VI GCNNNNNNNGC 5 cut(s) 71, 77, 115, 247, 353
HpyF3I CTNAG 1 cut(s) 102
HpySE526I ACGT 2 cut(s) 144, 220
Hsp92II CATG 7 cut(s) 328, 557, 577, 591, 935, 998, 1071
HspAI GCGC 6 cut(s) 30, 43, 45, 109, 111, 185
Ksp22I TGATCA 2 cut(s) 474, 606
KspI CCGCGG 1 cut(s) 51
Kzo9I GATC 4 cut(s) 124, 474, 606, 845
LmnI GCTCC 3 cut(s) 37, 85, 1048
Lsp1109I GCAGC 3 cut(s) 100, 103, 911
LweI GCATC 1 cut(s) 334
MaeII ACGT 2 cut(s) 144, 220
MaeIII GTNAC 2 cut(s) 221, 963
MalI GATC 4 cut(s) 126, 476, 608, 847
MboI GATC 4 cut(s) 124, 474, 606, 845
MboII GAAGA 5 cut(s) 67, 269, 407, 419, 963
MflI RGATCY 1 cut(s) 124
MhlI GDGCHC 1 cut(s) 120
MluCI AATT 7 cut(s) 172, 333, 404, 641, 706, 721, 788
MmeI TCCRAC 2 cut(s) 692, 750
MseI TTAA 6 cut(s) 351, 408, 543, 677, 761, 836
MslI CAYNNNNRTG 1 cut(s) 558
MspA1I CMGCKG 3 cut(s) 50, 94, 902
MspCI CTTAAG 1 cut(s) 676
MvnI CGCG 4 cut(s) 43, 45, 50, 111
MwoI GCNNNNNNNGC 5 cut(s) 71, 77, 115, 247, 353
NdeII GATC 4 cut(s) 124, 474, 606, 845
NlaIII CATG 7 cut(s) 328, 557, 577, 591, 935, 998, 1071
NlaIV GGNNCC 1 cut(s) 297
NmeAIII GCCGAG 2 cut(s) 46, 106
NmuCI GTSAC 1 cut(s) 221
NspI RCATGY 2 cut(s) 557, 591
PagI TCATGA 1 cut(s) 931
PauI GCGCGC 2 cut(s) 43, 109
PciI ACATGT 1 cut(s) 553
PfeI GAWTC 4 cut(s) 179, 487, 655, 856
PflMI CCANNNNNTGG 1 cut(s) 499
PkrI GCNGC 8 cut(s) 49, 52, 67, 70, 73, 90, 93, 901
PscI ACATGT 1 cut(s) 553
PshBI ATTAAT 3 cut(s) 351, 543, 836
PspN4I GGNNCC 1 cut(s) 297
PspPI GGNCC 1 cut(s) 248
PstNI CAGNNNCTG 1 cut(s) 94
PsuI RGATCY 1 cut(s) 124
PteI GCGCGC 2 cut(s) 43, 109
PvuII CAGCTG 2 cut(s) 94, 902
RsaI GTAC 2 cut(s) 941, 986
RsaNI GTAC 2 cut(s) 940, 985
RseI CAYNNNNRTG 1 cut(s) 558
SacII CCGCGG 1 cut(s) 51
SaqAI TTAA 6 cut(s) 351, 408, 543, 677, 761, 836
SatI GCNGC 8 cut(s) 48, 51, 66, 69, 72, 89, 92, 900
Sau3AI GATC 4 cut(s) 124, 474, 606, 845
Sau96I GGNCC 1 cut(s) 248
SduI GDGCHC 1 cut(s) 120
SfaNI GCATC 1 cut(s) 334
Sfr303I CCGCGG 1 cut(s) 51
SgrBI CCGCGG 1 cut(s) 51
SmiMI CAYNNNNRTG 1 cut(s) 558
SmlI CTYRAG 2 cut(s) 676, 699
SmoI CTYRAG 2 cut(s) 676, 699
Sse9I AATT 7 cut(s) 172, 333, 404, 641, 706, 721, 788
SsiI CCGC 6 cut(s) 35, 48, 50, 65, 68, 71
SspI AATATT 1 cut(s) 458
StyI CCWWGG 2 cut(s) 75, 860
TaaI ACNGT 2 cut(s) 16, 664
TaiI ACGT 2 cut(s) 147, 223
TaqI TCGA 1 cut(s) 464
TasI AATT 7 cut(s) 172, 333, 404, 641, 706, 721, 788
TatI WGTACW 2 cut(s) 939, 984
TauI GCSGC 5 cut(s) 50, 53, 68, 71, 74
TfiI GAWTC 4 cut(s) 179, 487, 655, 856
Tru1I TTAA 6 cut(s) 351, 408, 543, 677, 761, 836
Tru9I TTAA 6 cut(s) 351, 408, 543, 677, 761, 836
TscAI CASTG 1 cut(s) 19
TseFI GTSAC 1 cut(s) 221
TseI GCWGC 3 cut(s) 88, 91, 899
Tsp45I GTSAC 1 cut(s) 221
TspDTI ATGAA 7 cut(s) 417, 419, 482, 508, 801, 869, 920
TspGWI ACGGA 1 cut(s) 217
TspRI CASTG 1 cut(s) 19
Van91I CCANNNNNTGG 1 cut(s) 499
Vha464I CTTAAG 1 cut(s) 676
VspI ATTAAT 3 cut(s) 351, 543, 836
XapI RAATTY 4 cut(s) 333, 404, 641, 788
XceI RCATGY 2 cut(s) 557, 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.