AT1G47230

Belongs to the cyclin family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
17306574 .. 17308848
2275 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G47230.2

Sequence Viewer

Length: 1110 bp
ATGGCGGAGAATCAGAACTGTGCGAGGATGACGAGAGCGGCGGCGAAACGAAAAGCGTCGTCCATGGCGTTAGACGAAAACCCAGTTAGTAAGAAGAGAGTTGTTCTCGGAGAGCTTCCGAATATGTCCAATGTCGTTGCTGTACCCAATCAAGAAAGAGAGACCCTTAAGGCTAAAACAAGTGTTAATACCTCGAAGAGGCAGATGAAGAAGGCTTTGATGATTCCTGAAGCTAGCGTACTAATCGAATCGAGATCTGTTGATCCTCAGATGTGTGAGCCTTTTGCTAGTGATATTTGTGCTTATCTCCGTGAAATGGAGGGGAAGCCGAAACATAGACCACTACCTGATTATATTGAAAAGGTTCAGAGTGATTTAACTCCACACATGAGAGCGGTTTTGGTGGATTGGTTAGTGGAGGTTGCTGAGGAGTACAAGCTTGTTTCGGATACGCTTTATCTCACTATCTCCTATGTTGATAGATTCTTGTCTGTGAAGCCTATTAACAGGCAGAAGCTTCAGCTTGTGGGAGTTTCTGCAATGCTTATTGCGTCGAAATATGAAGAGATAGGTCCTCCTAAAGTTGAAGATTTTTGTTACATTACGGATAATACATTTACTAAACAAGAAGTGGTGTCGATGGAGGCGGATATACTTCTTGCTCTGCAGTTTGAATTAGGAAGCCCAACCATCAAAACATTCCTAAGACGGTTTACACGGGTTGCACAAGAAGATTTCAAAGACTCACAATTGCAGATAGAGTTCCTTTGTTGCTATCTATCAGAATTGAGTATGTTAGATTACACCTGTGTGAAGTATTTGCCATCTCTTTTGTCTGCTTCAGCTGTATTTCTTGCCCGGTTCATCATCCGTCCAAAACAACATCCTTGGAATCAAATGCTAGAAGAATACACAAAGTACAAAGCAGCTGATCTACAAGTGTGCGTGGGTATCATACATGACTTGTATCTAAGCAGAAGAGGAAACACTCTAGAAGCTGTTAGAAATAAGTACAAGCAACACAAGTACAAGTGCGTTGCGACCATGCCTGTTTCACCGGAGCTACCTCTTGCTTTCTTTGAAGATATTACCATTAGAGGAATGGCGTAA

Protein Analysis

369

Amino Acids

42.16

Weight (kDa)

8.43

Isoelectric Point (pI)

46.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 98 - 227 1.6e-44 Cyclin, N-terminal domain
Cyclin_C PF02984 230 - 352 3.7e-36 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000541)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47210 AT1G47210 AT1G47220 AT1G47230 AT1G47230 AT2G01310 AT5G43080 AT5G43080
fragaria_vesca FvH4_2g04770 FvH4_2g04770 FvH4_2g04770 FvH4_2g33510 FvH4_2g33510 FvH4_2g33510 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33530 FvH4_2g33530
malus_domestica MD05G1092000.v1.1 MD08G1091000.v1.1 MD08G1091200.v1.1 MD10G1100200.v1.1 MD10G1100700.v1.1 MD12G1105600.v1.1 MD15G1075100.v1.1 MD15G1075200.v1.1
prunus_persica Prupe.1G428000_v2.0.a1 Prupe.1G428100_v2.0.a1 Prupe.4G285800_v2.0.a1 Prupe.8G137700_v2.0.a1 Prupe.8G137700_v2.0.a1
pyrus_communis pycom05g09170 pycom08g07360 pycom08g07370 pycom15g07000 pycom15g07020
rosa_chinensis RchiOBHm_Chr3g0465621 RchiOBHm_Chr6g0254421 RchiOBHm_Chr6g0254451 RchiOBHm_Chr6g0308961 RchiOBHm_Chr6g0308971 RchiOBHm_Chr6g0308991 RchiOBHm_Chr7g0190851
rosa_laevigata RLG00000003915 RLG00000010598 RLG00000010599 RLG00000010600 RLG00000014913
rosa_multiflora Rmu_sc0009578.1_g000002 Rmu_sc0009578.1_g000003 Rmu_sc0029942.1_g000001 Rmu_sc0036151.1_g000001 Rmu_sc0036151.1_g000002 Rmu_sc0037719.1_g000001 Rmu_sc0042877.1_g000001 Rmu_ssc0000481.1_g000003
rosa_roxburghii Rroxscaffold_7G00159740 Rroxscaffold_7G00159750 Rroxscaffold_7G00159760 Rroxscaffold_7G00159770 Rroxscaffold_7G00210810
rosa_rugosa Rorug05G0552200 Rorug05G0552300 Rorug05G0552400
rosa_samantha Rh3CG081000 Rh6AG069300 Rh6AG481300 Rh6AG481600 Rh6BG062000 Rh6BG490400 Rh6BG490500 Rh6BG490600 Rh6CG062100 Rh6CG495700 Rh6CG495900 Rh6DG059100 Rh6DG481600 Rh6DG481700 Rh6DG481800
rosa_wichuraiana Rw6G006090 Rw6G041930 Rw6G041940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 38, 395
AciI CCGC 5 cut(s) 5, 38, 41, 395, 647
AclWI GGATC 1 cut(s) 257
AcuI CTGAAG 3 cut(s) 249, 503, 825
AfaI GTAC 6 cut(s) 144, 240, 434, 920, 1013, 1028
AfiI CCNNNNNNNGG 2 cut(s) 198, 316
AflII CTTAAG 1 cut(s) 167
AgsI TTSAA 5 cut(s) 359, 587, 674, 739, 1082
AleI CACNNNNGTG 1 cut(s) 809
AluBI AGCT 9 cut(s) 115, 233, 439, 517, 523, 845, 929, 998, 1063
AluI AGCT 9 cut(s) 115, 233, 439, 517, 523, 845, 929, 998, 1063
Alw26I GTCTC 1 cut(s) 155
AlwI GGATC 1 cut(s) 257
ApeKI GCWGC 1 cut(s) 926
Asp700I GAANNNNTTC 1 cut(s) 363
AspS9I GGNCC 1 cut(s) 572
AsuC2I CCSGG 1 cut(s) 859
AsuHPI GGTGA 1 cut(s) 1047
AsuNHI GCTAGC 1 cut(s) 233
AvaII GGWCC 1 cut(s) 572
BarI GAAGNNNNNNTAC 2 cut(s) 222, 254
BbvCI CCTCAGC 1 cut(s) 426
BbvI GCAGC 1 cut(s) 938
BccI CCATC 3 cut(s) 634, 698, 832
BciVI GTATCC 1 cut(s) 442
BcnI CCSGG 1 cut(s) 859
BcoDI GTCTC 1 cut(s) 155
BfaI CTAG 4 cut(s) 234, 288, 902, 992
BfmI CTRYAG 1 cut(s) 665
BfrI CTTAAG 1 cut(s) 167
BfuI GTATCC 1 cut(s) 442
BglII AGATCT 1 cut(s) 254
BisI GCNGC 3 cut(s) 39, 42, 927
BlsI GCNGC 3 cut(s) 40, 43, 928
Bme1390I CCNGG 1 cut(s) 859
Bme18I GGWCC 1 cut(s) 572
BmgT120I GGNCC 1 cut(s) 572
BmrFI CCNGG 1 cut(s) 859
BmrI ACTGGG 1 cut(s) 77
BmtI GCTAGC 1 cut(s) 237
BmuI ACTGGG 1 cut(s) 77
BplI GAGNNNNNCTC 2 cut(s) 90, 122
Bpu10I CCTNAGC 1 cut(s) 426
BpuMI CCSGG 1 cut(s) 859
BsaI GGTCTC 1 cut(s) 155
BsaJI CCNNGG 2 cut(s) 63, 887
BsaWI WCCGGW 1 cut(s) 1057
Bsc4I CCNNNNNNNGG 2 cut(s) 198, 316
Bse1I ACTGG 1 cut(s) 83
Bse3DI GCAATG 1 cut(s) 546
BseDI CCNNGG 2 cut(s) 63, 887
BseGI GGATG 3 cut(s) 33, 867, 883
BseLI CCNNNNNNNGG 2 cut(s) 198, 316
BseMI GCAATG 1 cut(s) 546
BseMII CTCAG 2 cut(s) 281, 417
BseNI ACTGG 1 cut(s) 83
BseRI GAGGAG 1 cut(s) 443
BseXI GCAGC 1 cut(s) 938
BsiSI CCGG 2 cut(s) 859, 1058
BslI CCNNNNNNNGG 2 cut(s) 198, 316
BsmAI GTCTC 1 cut(s) 155
Bso31I GGTCTC 1 cut(s) 155
Bsp143I GATC 3 cut(s) 254, 262, 931
Bsp19I CCATGG 1 cut(s) 63
BspACI CCGC 5 cut(s) 5, 38, 41, 395, 647
BspCNI CTCAG 2 cut(s) 280, 418
BspMAI CTGCAG 1 cut(s) 669
BspOI GCTAGC 1 cut(s) 237
BspPI GGATC 1 cut(s) 257
BspTI CTTAAG 1 cut(s) 167
BspTNI GGTCTC 1 cut(s) 155
BsrBI CCGCTC 2 cut(s) 38, 395
BsrDI GCAATG 1 cut(s) 546
BsrI ACTGG 1 cut(s) 83
BssECI CCNNGG 2 cut(s) 63, 887
BssMI GATC 3 cut(s) 254, 262, 931
BssT1I CCWWGG 2 cut(s) 63, 887
Bst4CI ACNGT 2 cut(s) 20, 711
Bst6I CTCTTC 4 cut(s) 89, 191, 558, 973
BstAFI CTTAAG 1 cut(s) 167
BstC8I GCNNGC 1 cut(s) 235
BstDEI CTNAG 4 cut(s) 267, 426, 704, 971
BstDSI CCRYGG 1 cut(s) 63
BstENI CCTNNNNNAGG 1 cut(s) 196
BstF5I GGATG 3 cut(s) 33, 867, 883
BstKTI GATC 3 cut(s) 257, 265, 934
BstMAI GTCTC 1 cut(s) 155
BstMBI GATC 3 cut(s) 254, 262, 931
BstSCI CCNGG 1 cut(s) 857
BstSFI CTRYAG 1 cut(s) 665
BstV1I GCAGC 1 cut(s) 938
BstX2I RGATCY 1 cut(s) 254
BstYI RGATCY 1 cut(s) 254
BsuI GTATCC 1 cut(s) 442
BtgI CCRYGG 1 cut(s) 63
BtsCI GGATG 3 cut(s) 33, 867, 883
Cac8I GCNNGC 1 cut(s) 235
Cfr13I GGNCC 1 cut(s) 572
CseI GACGC 2 cut(s) 45, 540
Csp6I GTAC 6 cut(s) 143, 239, 433, 919, 1012, 1027
CviAII CATG 4 cut(s) 64, 388, 959, 1045
CviQI GTAC 6 cut(s) 143, 239, 433, 919, 1012, 1027
DdeI CTNAG 4 cut(s) 267, 426, 704, 971
DpnI GATC 3 cut(s) 256, 264, 933
DpnII GATC 3 cut(s) 254, 262, 931
Eam1104I CTCTTC 4 cut(s) 89, 191, 558, 973
EarI CTCTTC 4 cut(s) 89, 191, 558, 973
EciI GGCGGA 2 cut(s) 20, 662
Eco130I CCWWGG 2 cut(s) 63, 887
Eco31I GGTCTC 1 cut(s) 155
Eco47I GGWCC 1 cut(s) 572
Eco57I CTGAAG 3 cut(s) 249, 503, 825
EcoNI CCTNNNNNAGG 1 cut(s) 196
EcoO109I RGGNCCY 1 cut(s) 572
EcoT14I CCWWGG 2 cut(s) 63, 887
ErhI CCWWGG 2 cut(s) 63, 887
FaeI CATG 4 cut(s) 67, 391, 962, 1048
FatI CATG 4 cut(s) 63, 387, 958, 1044
Fnu4HI GCNGC 3 cut(s) 39, 42, 927
FokI GGATG 3 cut(s) 40, 854, 870
Fsp4HI GCNGC 3 cut(s) 39, 42, 927
FspBI CTAG 4 cut(s) 234, 288, 902, 992
GluI GCNGC 3 cut(s) 39, 42, 927
HapII CCGG 2 cut(s) 859, 1058
HgaI GACGC 2 cut(s) 45, 540
Hin1II CATG 4 cut(s) 67, 391, 962, 1048
HindIII AAGCTT 2 cut(s) 437, 515
HinfI GANTC 6 cut(s) 10, 223, 248, 483, 743, 892
HpaII CCGG 2 cut(s) 859, 1058
HphI GGTGA 1 cut(s) 1047
Hpy166II GTNNAC 1 cut(s) 714
Hpy188I TCNGA 7 cut(s) 15, 110, 120, 270, 369, 448, 784
Hpy188III TCNNGA 4 cut(s) 152, 227, 252, 992
Hpy8I GTNNAC 1 cut(s) 714
Hpy99I CGWCG 2 cut(s) 61, 556
HpyAV CCTTC 1 cut(s) 205
HpyCH4III ACNGT 2 cut(s) 20, 711
HpyCH4V TGCA 4 cut(s) 539, 667, 725, 754
HpyF3I CTNAG 4 cut(s) 267, 426, 704, 971
Hsp92II CATG 4 cut(s) 67, 391, 962, 1048
Kzo9I GATC 3 cut(s) 254, 262, 931
LmnI GCTCC 1 cut(s) 1060
LpnPI CCDG 8 cut(s) 96, 240, 360, 493, 820, 872, 1062, 1071
Lsp1109I GCAGC 1 cut(s) 938
MaeI CTAG 4 cut(s) 234, 288, 902, 992
MaeIII GTNAC 1 cut(s) 596
MalI GATC 3 cut(s) 256, 264, 933
MbiI CCGCTC 2 cut(s) 38, 395
MboI GATC 3 cut(s) 254, 262, 931
MboII GAAGA 9 cut(s) 106, 208, 220, 575, 599, 743, 917, 990, 1094
MfeI CAATTG 1 cut(s) 749
MflI RGATCY 1 cut(s) 254
MluCI AATT 3 cut(s) 674, 749, 785
MlyI GAGTC 1 cut(s) 737
MroXI GAANNNNTTC 1 cut(s) 363
MseI TTAA 4 cut(s) 168, 186, 377, 504
MslI CAYNNNNRTG 1 cut(s) 809
MspA1I CMGCKG 2 cut(s) 845, 929
MspCI CTTAAG 1 cut(s) 167
MspI CCGG 2 cut(s) 859, 1058
MspR9I CCNGG 1 cut(s) 859
MunI CAATTG 1 cut(s) 749
NciI CCSGG 1 cut(s) 859
NcoI CCATGG 1 cut(s) 63
NdeII GATC 3 cut(s) 254, 262, 931
NheI GCTAGC 1 cut(s) 233
NlaIII CATG 4 cut(s) 67, 391, 962, 1048
OliI CACNNNNGTG 1 cut(s) 809
PcsI WCGNNNNNNNCGW 1 cut(s) 65
PdmI GAANNNNTTC 1 cut(s) 363
PfeI GAWTC 5 cut(s) 10, 223, 248, 483, 892
PkrI GCNGC 3 cut(s) 40, 43, 928
PleI GAGTC 1 cut(s) 737
PpsI GAGTC 1 cut(s) 737
PpuMI RGGWCCY 1 cut(s) 572
Psp5II RGGWCCY 1 cut(s) 572
PspPI GGNCC 1 cut(s) 572
PspPPI RGGWCCY 1 cut(s) 572
PstI CTGCAG 1 cut(s) 669
PsuI RGATCY 1 cut(s) 254
PvuII CAGCTG 2 cut(s) 845, 929
RsaI GTAC 6 cut(s) 144, 240, 434, 920, 1013, 1028
RsaNI GTAC 6 cut(s) 143, 239, 433, 919, 1012, 1027
RseI CAYNNNNRTG 1 cut(s) 809
SaqAI TTAA 4 cut(s) 168, 186, 377, 504
SatI GCNGC 3 cut(s) 39, 42, 927
Sau3AI GATC 3 cut(s) 254, 262, 931
Sau96I GGNCC 1 cut(s) 572
SchI GAGTC 1 cut(s) 737
ScrFI CCNGG 1 cut(s) 859
SfcI CTRYAG 1 cut(s) 665
SinI GGWCC 1 cut(s) 572
SmiMI CAYNNNNRTG 1 cut(s) 809
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
Sse9I AATT 3 cut(s) 674, 749, 785
SsiI CCGC 5 cut(s) 5, 38, 41, 395, 647
SspMI CTAG 4 cut(s) 234, 288, 902, 992
StyD4I CCNGG 1 cut(s) 857
StyI CCWWGG 2 cut(s) 63, 887
TaaI ACNGT 2 cut(s) 20, 711
TaqI TCGA 5 cut(s) 194, 246, 251, 554, 638
TasI AATT 3 cut(s) 674, 749, 785
TatI WGTACW 4 cut(s) 432, 918, 1011, 1026
TauI GCSGC 2 cut(s) 41, 44
TfiI GAWTC 5 cut(s) 10, 223, 248, 483, 892
Tru1I TTAA 4 cut(s) 168, 186, 377, 504
Tru9I TTAA 4 cut(s) 168, 186, 377, 504
TseI GCWGC 1 cut(s) 926
TspDTI ATGAA 3 cut(s) 221, 576, 853
TspGWI ACGGA 3 cut(s) 299, 620, 860
Vha464I CTTAAG 1 cut(s) 167
VpaK11BI GGWCC 1 cut(s) 572
XagI CCTNNNNNAGG 1 cut(s) 196
XbaI TCTAGA 1 cut(s) 991
XcmI CCANNNNNNNNNTGG 1 cut(s) 1099
XmnI GAANNNNTTC 1 cut(s) 363
XspI CTAG 4 cut(s) 234, 288, 902, 992
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.