Rmu_ssc0000481.1_g000003

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000481.1
OG0000541
Physical Location & Seq
Forward (+)
18341 .. 22993
4653 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000481.1_g000003.1.cds

Sequence Viewer

Length: 1206 bp
atgtgcgacgaaggaaacggcgtctacaccacgcgctcgacgaagaagcgagcctcggcggcggaggctctgaaagctccggcgtccaaaaagcagcgatccgtactgggagagatcaccaactcgcaggatctcgtttcggttcccaaatcggcaccgaagaaaccgaaaattgagtcgcagaaggagaagaagaaggaagaggaggagggactcgagacggagattggtgtgagctcgattgatccggtcaaatgtgcttactcgccttctatgtataagcatcttcataaattggaggtggaggtgaagaatagaccattatgtggttacatggagaaggtgcagaattgtgtttcagaacacatgcgagaagtcctggtggattggttggtggaggttgcggaggaatacaagtttgtttcagacaccctttatcttaccgtatcatatatcgacagatacctttcttcacacgttatcagcaagaacaagctacagcttcttggtgttgcgtgcatgtttgttgcctcgaagtacgaagagatttgtcctccacgtattgaagagttctgctatataacagataattcctacatgatagaagaggtgttggaaatggagaaagatgtactcaaattcttgaactttgagatctatactcccacgacaaagagttttctcagaatcttagcaagagctgctcaagagaattccaaatctttgggtctgcagtttgaattcttgggtggttatcttgcggaactaagtttgcttgactactgctgtgttcgattcctaccatcagttattgctgcatcggcagtttttcttacaaggttcacaatccagcctgaggttcatccctggagctggaacttgcaatgctattctggttataaaccatctgatttacaagattgtgtccttgcccttcatgacttccagctgaataaaagaggaagcaatttgcgagcgcagcaaatcttggaacacgattcttgggagcacaacagcgggaatcctggagtcacacggcagcatgattcctgggattacagcagcaagatttctgggattacagcagcaagatttctgggattacagcagcaagattcatggaacagcagcagacctaagccaccactactctataaatcgatggttatagctactgtgaaagaggaggcacaagcgaactactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

401

Amino Acids

45.65

Weight (kDa)

6.19

Isoelectric Point (pI)

50.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000541)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47210 AT1G47210 AT1G47220 AT1G47230 AT1G47230 AT2G01310 AT5G43080 AT5G43080
fragaria_vesca FvH4_2g04770 FvH4_2g04770 FvH4_2g04770 FvH4_2g33510 FvH4_2g33510 FvH4_2g33510 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33530 FvH4_2g33530
malus_domestica MD05G1092000.v1.1 MD08G1091000.v1.1 MD08G1091200.v1.1 MD10G1100200.v1.1 MD10G1100700.v1.1 MD12G1105600.v1.1 MD15G1075100.v1.1 MD15G1075200.v1.1
prunus_persica Prupe.1G428000_v2.0.a1 Prupe.1G428100_v2.0.a1 Prupe.4G285800_v2.0.a1 Prupe.8G137700_v2.0.a1 Prupe.8G137700_v2.0.a1
pyrus_communis pycom05g09170 pycom08g07360 pycom08g07370 pycom15g07000 pycom15g07020
rosa_chinensis RchiOBHm_Chr3g0465621 RchiOBHm_Chr6g0254421 RchiOBHm_Chr6g0254451 RchiOBHm_Chr6g0308961 RchiOBHm_Chr6g0308971 RchiOBHm_Chr6g0308991 RchiOBHm_Chr7g0190851
rosa_laevigata RLG00000003915 RLG00000010598 RLG00000010599 RLG00000010600 RLG00000014913
rosa_multiflora Rmu_sc0009578.1_g000002 Rmu_sc0009578.1_g000003 Rmu_sc0029942.1_g000001 Rmu_sc0036151.1_g000001 Rmu_sc0036151.1_g000002 Rmu_sc0037719.1_g000001 Rmu_sc0042877.1_g000001 Rmu_ssc0000481.1_g000003
rosa_roxburghii Rroxscaffold_7G00159740 Rroxscaffold_7G00159750 Rroxscaffold_7G00159760 Rroxscaffold_7G00159770 Rroxscaffold_7G00210810
rosa_rugosa Rorug05G0552200 Rorug05G0552300 Rorug05G0552400
rosa_samantha Rh3CG081000 Rh6AG069300 Rh6AG481300 Rh6AG481600 Rh6BG062000 Rh6BG490400 Rh6BG490500 Rh6BG490600 Rh6CG062100 Rh6CG495700 Rh6CG495900 Rh6DG059100 Rh6DG481600 Rh6DG481700 Rh6DG481800
rosa_wichuraiana Rw6G006090 Rw6G041930 Rw6G041940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 900
AccB1I GGYRCC 1 cut(s) 154
AccB7I CCANNNNNTGG 1 cut(s) 326
AccI GTMKAC 1 cut(s) 24
AccII CGCG 1 cut(s) 34
AciI CCGC 5 cut(s) 59, 62, 404, 761, 1017
AclWI GGATC 3 cut(s) 93, 138, 239
AcsI RAATTY 3 cut(s) 638, 712, 740
AcyI GRCGYC 2 cut(s) 21, 83
AfaI GTAC 3 cut(s) 105, 539, 633
AfiI CCNNNNNNNGG 3 cut(s) 326, 856, 873
AflIII ACRYGT 1 cut(s) 475
AgsI TTSAA 3 cut(s) 566, 646, 740
AjnI CCWGG 4 cut(s) 378, 866, 1024, 1049
AluBI AGCT 8 cut(s) 77, 237, 496, 502, 701, 873, 949, 1172
AluI AGCT 8 cut(s) 77, 237, 496, 502, 701, 873, 949, 1172
Alw21I GWGCWC 2 cut(s) 239, 1011
Alw26I GTCTC 1 cut(s) 212
AlwI GGATC 3 cut(s) 93, 138, 239
Ama87I CYCGRG 1 cut(s) 215
ApeKI GCWGC 9 cut(s) 94, 701, 815, 979, 1039, 1062, 1085, 1108, 1128
ApoI RAATTY 3 cut(s) 638, 712, 740
ArsI GACNNNNNNTTYG 2 cut(s) 161, 193
AspLEI GCGC 2 cut(s) 36, 979
AsuHPI GGTGA 2 cut(s) 109, 319
AvaI CYCGRG 1 cut(s) 215
AxyI CCTNAGG 1 cut(s) 855
BanI GGYRCC 1 cut(s) 154
BanII GRGCYC 1 cut(s) 239
Bbv12I GWGCWC 2 cut(s) 239, 1011
BbvI GCAGC 9 cut(s) 106, 688, 802, 991, 1051, 1074, 1097, 1120, 1140
BccI CCATC 3 cut(s) 811, 913, 1156
BceAI ACGGC 2 cut(s) 34, 1052
BciT130I CCWGG 4 cut(s) 380, 868, 1026, 1051
BcoDI GTCTC 1 cut(s) 212
BfmI CTRYAG 2 cut(s) 497, 731
BglI GCCNNNNNGGC 1 cut(s) 59
BglII AGATCT 1 cut(s) 654
Bme1390I CCNGG 4 cut(s) 380, 868, 1026, 1051
BmeT110I CYCGRG 1 cut(s) 215
BmiI GGNNCC 2 cut(s) 144, 156
BmrFI CCNGG 4 cut(s) 380, 868, 1026, 1051
BmrI ACTGGG 1 cut(s) 116
BmsI GCATC 2 cut(s) 292, 827
BmuI ACTGGG 1 cut(s) 116
BpmI CTGGAG 2 cut(s) 889, 1047
Bpu10I CCTNAGC 1 cut(s) 1137
BpuEI CTTGAG 1 cut(s) 690
Bsa29I ATCGAT 1 cut(s) 1160
BsaAI YACGTR 1 cut(s) 560
BsaHI GRCGYC 2 cut(s) 21, 83
BsaJI CCNNGG 3 cut(s) 54, 866, 1050
BsaWI WCCGGW 1 cut(s) 247
Bsc4I CCNNNNNNNGG 3 cut(s) 326, 856, 873
Bse1I ACTGG 1 cut(s) 111
Bse21I CCTNAGG 1 cut(s) 855
Bse3DI GCAATG 1 cut(s) 890
BseBI CCWGG 4 cut(s) 380, 868, 1026, 1051
BseCI ATCGAT 1 cut(s) 1160
BseDI CCNNGG 3 cut(s) 54, 866, 1050
BseGI GGATG 1 cut(s) 862
BseLI CCNNNNNNNGG 3 cut(s) 326, 856, 873
BseMI GCAATG 1 cut(s) 890
BseMII CTCAG 2 cut(s) 697, 846
BseNI ACTGG 1 cut(s) 111
BseRI GAGGAG 3 cut(s) 218, 221, 1199
BseXI GCAGC 9 cut(s) 106, 688, 802, 991, 1051, 1074, 1097, 1120, 1140
BsgI GTGCAG 1 cut(s) 365
Bsh1236I CGCG 1 cut(s) 34
BshNI GGYRCC 1 cut(s) 154
BshVI ATCGAT 1 cut(s) 1160
BsiHKAI GWGCWC 2 cut(s) 239, 1011
BsiHKCI CYCGRG 1 cut(s) 215
BsiSI CCGG 2 cut(s) 80, 248
BslFI GGGAC 1 cut(s) 225
BslI CCNNNNNNNGG 3 cut(s) 326, 856, 873
BsmAI GTCTC 1 cut(s) 212
BsmBI CGTCTC 1 cut(s) 212
BsmFI GGGAC 1 cut(s) 225
BsoBI CYCGRG 1 cut(s) 215
Bsp1286I GDGCHC 2 cut(s) 239, 1011
Bsp143I GATC 5 cut(s) 98, 114, 130, 244, 654
BspACI CCGC 5 cut(s) 59, 62, 404, 761, 1017
BspCNI CTCAG 2 cut(s) 696, 847
BspDI ATCGAT 1 cut(s) 1160
BspFNI CGCG 1 cut(s) 34
BspHI TCATGA 1 cut(s) 937
BspLI GGNNCC 2 cut(s) 144, 156
BspMAI CTGCAG 1 cut(s) 735
BspPI GGATC 3 cut(s) 93, 138, 239
BspT107I GGYRCC 1 cut(s) 154
BsrDI GCAATG 1 cut(s) 890
BsrI ACTGG 1 cut(s) 111
BssECI CCNNGG 3 cut(s) 54, 866, 1050
BssMI GATC 5 cut(s) 98, 114, 130, 244, 654
BssNI GRCGYC 2 cut(s) 21, 83
Bst2UI CCWGG 4 cut(s) 380, 868, 1026, 1051
Bst4CI ACNGT 2 cut(s) 445, 1177
Bst6I CTCTTC 4 cut(s) 195, 537, 561, 600
BstACI GRCGYC 2 cut(s) 21, 83
BstAPI GCANNNNNTGC 1 cut(s) 701
BstBAI YACGTR 1 cut(s) 560
BstC8I GCNNGC 3 cut(s) 51, 517, 975
BstDEI CTNAG 5 cut(s) 683, 691, 767, 855, 1137
BstF5I GGATG 1 cut(s) 862
BstFNI CGCG 1 cut(s) 34
BstHHI GCGC 2 cut(s) 36, 979
BstKTI GATC 5 cut(s) 101, 117, 133, 247, 657
BstMAI GTCTC 1 cut(s) 212
BstMBI GATC 5 cut(s) 98, 114, 130, 244, 654
BstMWI GCNNNNNNNGC 6 cut(s) 59, 65, 74, 701, 821, 979
BstNI CCWGG 4 cut(s) 380, 868, 1026, 1051
BstNSI RCATGY 2 cut(s) 370, 523
BstSCI CCNGG 4 cut(s) 378, 866, 1024, 1049
BstSFI CTRYAG 2 cut(s) 497, 731
BstUI CGCG 1 cut(s) 34
BstV1I GCAGC 9 cut(s) 106, 688, 802, 991, 1051, 1074, 1097, 1120, 1140
BstX2I RGATCY 2 cut(s) 130, 654
BstXI CCANNNNNNTGG 1 cut(s) 724
BstYI RGATCY 2 cut(s) 130, 654
Bsu15I ATCGAT 1 cut(s) 1160
Bsu36I CCTNAGG 1 cut(s) 855
BsuTUI ATCGAT 1 cut(s) 1160
BtsCI GGATG 1 cut(s) 862
Cac8I GCNNGC 3 cut(s) 51, 517, 975
CciI TCATGA 1 cut(s) 937
CfoI GCGC 2 cut(s) 36, 979
ClaI ATCGAT 1 cut(s) 1160
CseI GACGC 2 cut(s) 10, 72
Csp6I GTAC 3 cut(s) 104, 538, 632
CviAII CATG 7 cut(s) 334, 367, 520, 598, 938, 1043, 1119
CviQI GTAC 3 cut(s) 104, 538, 632
DdeI CTNAG 5 cut(s) 683, 691, 767, 855, 1137
DpnI GATC 5 cut(s) 100, 116, 132, 246, 656
DpnII GATC 5 cut(s) 98, 114, 130, 244, 654
Eam1104I CTCTTC 4 cut(s) 195, 537, 561, 600
EarI CTCTTC 4 cut(s) 195, 537, 561, 600
EciI GGCGGA 1 cut(s) 77
Ecl136II GAGCTC 1 cut(s) 237
Eco24I GRGCYC 1 cut(s) 239
Eco53kI GAGCTC 1 cut(s) 237
Eco81I CCTNAGG 1 cut(s) 855
Eco88I CYCGRG 1 cut(s) 215
EcoICRI GAGCTC 1 cut(s) 237
EcoRI GAATTC 2 cut(s) 712, 740
EcoRII CCWGG 4 cut(s) 378, 866, 1024, 1049
EcoT38I GRGCYC 1 cut(s) 239
Esp3I CGTCTC 1 cut(s) 212
FaeI CATG 7 cut(s) 337, 370, 523, 601, 941, 1046, 1122
FaqI GGGAC 1 cut(s) 225
FatI CATG 7 cut(s) 333, 366, 519, 597, 937, 1042, 1118
FauI CCCGC 1 cut(s) 1010
FblI GTMKAC 1 cut(s) 24
FokI GGATG 1 cut(s) 849
FriOI GRGCYC 1 cut(s) 239
GlaI GCGC 2 cut(s) 35, 978
GsuI CTGGAG 2 cut(s) 889, 1047
HapII CCGG 2 cut(s) 80, 248
HgaI GACGC 2 cut(s) 10, 72
HhaI GCGC 2 cut(s) 36, 979
Hin1I GRCGYC 2 cut(s) 21, 83
Hin1II CATG 7 cut(s) 337, 370, 523, 601, 941, 1046, 1122
Hin6I GCGC 2 cut(s) 34, 977
HinP1I GCGC 2 cut(s) 34, 977
HinfI GANTC 9 cut(s) 176, 213, 687, 795, 998, 1021, 1029, 1046, 1115
HpaII CCGG 2 cut(s) 80, 248
HphI GGTGA 2 cut(s) 109, 319
Hpy166II GTNNAC 2 cut(s) 25, 843
Hpy188I TCNGA 5 cut(s) 72, 361, 427, 686, 910
Hpy188III TCNNGA 4 cut(s) 217, 643, 707, 938
Hpy8I GTNNAC 2 cut(s) 25, 843
Hpy99I CGWCG 2 cut(s) 11, 43
HpyAV CCTTC 6 cut(s) 5, 178, 190, 279, 334, 944
HpyCH4III ACNGT 2 cut(s) 445, 1177
HpyCH4IV ACGT 2 cut(s) 477, 559
HpyCH4V TGCA 5 cut(s) 346, 519, 733, 818, 883
HpyF10VI GCNNNNNNNGC 6 cut(s) 59, 65, 74, 701, 821, 979
HpyF3I CTNAG 5 cut(s) 683, 691, 767, 855, 1137
HpySE526I ACGT 2 cut(s) 477, 559
Hsp92I GRCGYC 2 cut(s) 21, 83
Hsp92II CATG 7 cut(s) 337, 370, 523, 601, 941, 1046, 1122
HspAI GCGC 2 cut(s) 34, 977
Kzo9I GATC 5 cut(s) 98, 114, 130, 244, 654
LmnI GCTCC 3 cut(s) 82, 870, 1006
Lsp1109I GCAGC 9 cut(s) 106, 688, 802, 991, 1051, 1074, 1097, 1120, 1140
LweI GCATC 2 cut(s) 292, 827
MaeII ACGT 2 cut(s) 477, 559
MaeIII GTNAC 2 cut(s) 329, 1030
MalI GATC 5 cut(s) 100, 116, 132, 246, 656
MboI GATC 5 cut(s) 98, 114, 130, 244, 654
MflI RGATCY 2 cut(s) 130, 654
MhlI GDGCHC 2 cut(s) 239, 1011
MluCI AATT 8 cut(s) 171, 293, 349, 589, 638, 712, 740, 967
MlyI GAGTC 3 cut(s) 185, 207, 1038
MmeI TCCRAC 1 cut(s) 594
MspA1I CMGCKG 2 cut(s) 949, 1017
MspI CCGG 2 cut(s) 80, 248
MspR9I CCNGG 4 cut(s) 380, 868, 1026, 1051
MvaI CCWGG 4 cut(s) 380, 868, 1026, 1051
MvnI CGCG 1 cut(s) 34
MwoI GCNNNNNNNGC 6 cut(s) 59, 65, 74, 701, 821, 979
NdeII GATC 5 cut(s) 98, 114, 130, 244, 654
NlaIII CATG 7 cut(s) 337, 370, 523, 601, 941, 1046, 1122
NlaIV GGNNCC 2 cut(s) 144, 156
NmeAIII GCCGAG 1 cut(s) 35
NmuCI GTSAC 1 cut(s) 1030
NspI RCATGY 2 cut(s) 370, 523
PaeR7I CTCGAG 1 cut(s) 215
PagI TCATGA 1 cut(s) 937
PcsI WCGNNNNNNNCGW 1 cut(s) 38
PfeI GAWTC 6 cut(s) 687, 795, 998, 1021, 1046, 1115
PflMI CCANNNNNTGG 1 cut(s) 326
PfoI TCCNGGA 1 cut(s) 1024
PleI GAGTC 3 cut(s) 184, 207, 1037
PpsI GAGTC 3 cut(s) 184, 207, 1037
Ppu21I YACGTR 1 cut(s) 560
PsiI TTATAA 1 cut(s) 900
Psp124BI GAGCTC 1 cut(s) 239
Psp6I CCWGG 4 cut(s) 378, 866, 1024, 1049
PspGI CCWGG 4 cut(s) 378, 866, 1024, 1049
PspN4I GGNNCC 2 cut(s) 144, 156
PstI CTGCAG 1 cut(s) 735
PsuI RGATCY 2 cut(s) 130, 654
PvuII CAGCTG 1 cut(s) 949
RsaI GTAC 3 cut(s) 105, 539, 633
RsaNI GTAC 3 cut(s) 104, 538, 632
SacI GAGCTC 1 cut(s) 239
Sau3AI GATC 5 cut(s) 98, 114, 130, 244, 654
SchI GAGTC 3 cut(s) 185, 207, 1038
ScrFI CCNGG 4 cut(s) 380, 868, 1026, 1051
SduI GDGCHC 2 cut(s) 239, 1011
SfaNI GCATC 2 cut(s) 292, 827
SfcI CTRYAG 2 cut(s) 497, 731
Sfr274I CTCGAG 1 cut(s) 215
SlaI CTCGAG 1 cut(s) 215
SmlI CTYRAG 2 cut(s) 215, 705
SmoI CTYRAG 2 cut(s) 215, 705
Sse9I AATT 8 cut(s) 171, 293, 349, 589, 638, 712, 740, 967
SsiI CCGC 5 cut(s) 59, 62, 404, 761, 1017
SstI GAGCTC 1 cut(s) 239
StyD4I CCNGG 4 cut(s) 378, 866, 1024, 1049
TaaI ACNGT 2 cut(s) 445, 1177
TaiI ACGT 2 cut(s) 480, 562
TaqI TCGA 7 cut(s) 38, 216, 239, 456, 533, 793, 1160
TasI AATT 8 cut(s) 171, 293, 349, 589, 638, 712, 740, 967
TatI WGTACW 1 cut(s) 631
TauI GCSGC 1 cut(s) 62
TfiI GAWTC 6 cut(s) 687, 795, 998, 1021, 1046, 1115
TseFI GTSAC 1 cut(s) 1030
TseI GCWGC 9 cut(s) 94, 701, 815, 979, 1039, 1062, 1085, 1108, 1128
Tsp45I GTSAC 1 cut(s) 1030
TspDTI ATGAA 4 cut(s) 278, 851, 926, 1107
TspGWI ACGGA 2 cut(s) 91, 236
Van91I CCANNNNNTGG 1 cut(s) 326
XapI RAATTY 3 cut(s) 638, 712, 740
XceI RCATGY 2 cut(s) 370, 523
XhoI CTCGAG 1 cut(s) 215
XmiI GTMKAC 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.