AT1G47220

Belongs to the cyclin family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
17303676 .. 17305197
1522 bp
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UTR
Exon/CDS
Intron
AT1G47220.1

Sequence Viewer

Length: 984 bp
ATGGTGTCTAAGAAAGATAAACAGATTCATTCCGACCATAACCCTCAAGATGCTTCCCCGGTAGAGTGGGCGGAAATTCGACATAAGCTACTTGCGTTTCAAGAGAACATTCAATCAGGCTCTGACATTGACGCTAGGTCTGATGATCCACAGATGTGTGGACTTTATGTCTCAGATATCTACGAGTATCTCCGTGAATTAGAGGTGAAGCCAAAGCTAAGACCTTTACATGATTACATTGAAAAGATTCAAGAAGATATAACACCAAGCAAGAGAGGTGTTTTGGTAGATTGGTTAGTGGAAGTTGCTGAAGAGTTCGAACTCGTGTCTGAAACACTCTATCTCACTGTCTCTTACATTGATAGATTCTTGTCATTAAAGATGGTTAACGAGCACTGGCTTCAGCTTGTGGGAGTTTCTGCAATGTTTATCGCTTCGAAGTATGAAGAGAAACGTCGCCCTAAAGTGGAGGATTTTTGTTACATTACGGCTAATACTTATACGAAACAAGATGTGTTGAAGATGGAAGAGGATATACTTCTCGCGCTTGAGTTTGAACTAGGAAGGCCTACGACAAATACTTTTCTAAGACGGTTCATAAGGGTTGCACAAGAAGATTTCAAAGTGCCAAACTTGCAGCTAGAGCCTCTTTGTTGCTATCTGTCAGAACTAAGTATGTTAGATTATAGTTGTGTGAAGTTTGTTCCATCTTTGTTGGCTGCTTCTGCTGTCTTTCTCGCTCGATTCATCATCCTTCCTAACCAACATCCTTGGAGTCAAATGTTGGAAGAATGCACAAAGTACAAAGCGGCTGATCTACAAGTGTGTGTGGAGATCATGCTTGACTTGTACCTGAGCAGAAGTGAAGGTGCTTCAAAAGCTGTTAGAGAGAAATACAAGCAACATAAGTTCCAATACGTTGCGGCAATTCCTGTCTACCAAGAGCTTCCGGTTACCTTTTGGGAGGATGTTGTTACCATTTGA

Protein Analysis

327

Amino Acids

38.13

Weight (kDa)

5.07

Isoelectric Point (pI)

54.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 59 - 187 2.5e-44 Cyclin, N-terminal domain
Cyclin_C PF02984 190 - 311 7.4e-36 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000541)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47210 AT1G47210 AT1G47220 AT1G47230 AT1G47230 AT2G01310 AT5G43080 AT5G43080
fragaria_vesca FvH4_2g04770 FvH4_2g04770 FvH4_2g04770 FvH4_2g33510 FvH4_2g33510 FvH4_2g33510 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33530 FvH4_2g33530
malus_domestica MD05G1092000.v1.1 MD08G1091000.v1.1 MD08G1091200.v1.1 MD10G1100200.v1.1 MD10G1100700.v1.1 MD12G1105600.v1.1 MD15G1075100.v1.1 MD15G1075200.v1.1
prunus_persica Prupe.1G428000_v2.0.a1 Prupe.1G428100_v2.0.a1 Prupe.4G285800_v2.0.a1 Prupe.8G137700_v2.0.a1 Prupe.8G137700_v2.0.a1
pyrus_communis pycom05g09170 pycom08g07360 pycom08g07370 pycom15g07000 pycom15g07020
rosa_chinensis RchiOBHm_Chr3g0465621 RchiOBHm_Chr6g0254421 RchiOBHm_Chr6g0254451 RchiOBHm_Chr6g0308961 RchiOBHm_Chr6g0308971 RchiOBHm_Chr6g0308991 RchiOBHm_Chr7g0190851
rosa_laevigata RLG00000003915 RLG00000010598 RLG00000010599 RLG00000010600 RLG00000014913
rosa_multiflora Rmu_sc0009578.1_g000002 Rmu_sc0009578.1_g000003 Rmu_sc0029942.1_g000001 Rmu_sc0036151.1_g000001 Rmu_sc0036151.1_g000002 Rmu_sc0037719.1_g000001 Rmu_sc0042877.1_g000001 Rmu_ssc0000481.1_g000003
rosa_roxburghii Rroxscaffold_7G00159740 Rroxscaffold_7G00159750 Rroxscaffold_7G00159760 Rroxscaffold_7G00159770 Rroxscaffold_7G00210810
rosa_rugosa Rorug05G0552200 Rorug05G0552300 Rorug05G0552400
rosa_samantha Rh3CG081000 Rh6AG069300 Rh6AG481300 Rh6AG481600 Rh6BG062000 Rh6BG490400 Rh6BG490500 Rh6BG490600 Rh6CG062100 Rh6CG495700 Rh6CG495900 Rh6DG059100 Rh6DG481600 Rh6DG481700 Rh6DG481800
rosa_wichuraiana Rw6G006090 Rw6G041930 Rw6G041940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 936
AccII CGCG 1 cut(s) 545
AciI CCGC 3 cut(s) 71, 809, 923
AclWI GGATC 1 cut(s) 140
AcsI RAATTY 1 cut(s) 75
AcuI CTGAAG 2 cut(s) 330, 386
AfaI GTAC 2 cut(s) 803, 851
AfiI CCNNNNNNNGG 1 cut(s) 466
AgsI TTSAA 8 cut(s) 101, 113, 242, 251, 520, 557, 622, 876
AhdI GACNNNNNGTC 2 cut(s) 136, 167
AleI CACNNNNGTG 1 cut(s) 154
AluBI AGCT 6 cut(s) 88, 217, 406, 640, 881, 946
AluI AGCT 6 cut(s) 88, 217, 406, 640, 881, 946
Alw21I GWGCWC 1 cut(s) 396
Alw26I GTCTC 2 cut(s) 175, 355
AlwI GGATC 1 cut(s) 140
AlwNI CAGNNNCTG 1 cut(s) 122
AoxI GGCC 1 cut(s) 566
ApeKI GCWGC 2 cut(s) 637, 719
ApoI RAATTY 1 cut(s) 75
Asp700I GAANNNNTTC 1 cut(s) 246
AspLEI GCGC 1 cut(s) 547
AsuC2I CCSGG 1 cut(s) 59
AsuHPI GGTGA 1 cut(s) 217
AsuII TTCGAA 2 cut(s) 318, 437
BarI GAAGNNNNNNTAC 2 cut(s) 519, 551
BauI CACGAG 1 cut(s) 323
Bbv12I GWGCWC 1 cut(s) 396
BbvI GCAGC 2 cut(s) 649, 706
BccI CCATC 3 cut(s) 376, 517, 715
BceAI ACGGC 1 cut(s) 504
BcnI CCSGG 1 cut(s) 59
BcoDI GTCTC 2 cut(s) 175, 355
BfaI CTAG 3 cut(s) 135, 560, 641
BisI GCNGC 4 cut(s) 638, 720, 810, 924
BlsI GCNGC 4 cut(s) 639, 721, 811, 925
Bme1390I CCNGG 1 cut(s) 59
BmeRI GACNNNNNGTC 2 cut(s) 136, 167
BmrFI CCNGG 1 cut(s) 59
BmsI GCATC 1 cut(s) 40
Bpu10I CCTNAGC 1 cut(s) 854
Bpu14I TTCGAA 2 cut(s) 318, 437
BpuEI CTTGAG 2 cut(s) 30, 569
BpuMI CCSGG 1 cut(s) 59
BsaJI CCNNGG 2 cut(s) 57, 770
BsaWI WCCGGW 1 cut(s) 949
Bsc4I CCNNNNNNNGG 1 cut(s) 466
Bse1I ACTGG 1 cut(s) 401
Bse3DI GCAATG 1 cut(s) 429
BseDI CCNNGG 2 cut(s) 57, 770
BseGI GGATG 3 cut(s) 750, 766, 973
BseLI CCNNNNNNNGG 1 cut(s) 466
BseMI GCAATG 1 cut(s) 429
BseMII CTCAG 2 cut(s) 186, 845
BseNI ACTGG 1 cut(s) 401
BseXI GCAGC 2 cut(s) 649, 706
Bsh1236I CGCG 1 cut(s) 545
BshFI GGCC 1 cut(s) 568
BsiHKAI GWGCWC 1 cut(s) 396
BsiSI CCGG 2 cut(s) 59, 950
BslI CCNNNNNNNGG 1 cut(s) 466
BsmAI GTCTC 2 cut(s) 175, 355
BsmI GAATGC 1 cut(s) 797
BsnI GGCC 1 cut(s) 568
Bsp119I TTCGAA 2 cut(s) 318, 437
Bsp1286I GDGCHC 1 cut(s) 396
Bsp143I GATC 3 cut(s) 145, 814, 834
BspACI CCGC 3 cut(s) 71, 809, 923
BspANI GGCC 1 cut(s) 568
BspCNI CTCAG 2 cut(s) 185, 846
BspFNI CGCG 1 cut(s) 545
BspPI GGATC 1 cut(s) 140
BspT104I TTCGAA 2 cut(s) 318, 437
BsrDI GCAATG 1 cut(s) 429
BsrI ACTGG 1 cut(s) 401
BssECI CCNNGG 2 cut(s) 57, 770
BssMI GATC 3 cut(s) 145, 814, 834
BssSI CACGAG 1 cut(s) 323
BssT1I CCWWGG 1 cut(s) 770
Bst2BI CACGAG 1 cut(s) 323
Bst4CI ACNGT 2 cut(s) 349, 594
Bst6I CTCTTC 3 cut(s) 306, 441, 522
BstBI TTCGAA 2 cut(s) 318, 437
BstDEI CTNAG 6 cut(s) 9, 172, 218, 587, 671, 854
BstEII GGTNACC 1 cut(s) 952
BstF5I GGATG 3 cut(s) 750, 766, 973
BstFNI CGCG 1 cut(s) 545
BstHHI GCGC 1 cut(s) 547
BstKTI GATC 3 cut(s) 148, 817, 837
BstMAI GTCTC 2 cut(s) 175, 355
BstMBI GATC 3 cut(s) 145, 814, 834
BstMWI GCNNNNNNNGC 4 cut(s) 634, 643, 725, 878
BstPI GGTNACC 1 cut(s) 952
BstSCI CCNGG 1 cut(s) 57
BstUI CGCG 1 cut(s) 545
BstV1I GCAGC 2 cut(s) 649, 706
BsuRI GGCC 1 cut(s) 568
BtsCI GGATG 3 cut(s) 750, 766, 973
BtsIMutI CAGTG 2 cut(s) 345, 394
CaiI CAGNNNCTG 1 cut(s) 122
CfoI GCGC 1 cut(s) 547
CseI GACGC 1 cut(s) 140
Csp6I GTAC 2 cut(s) 802, 850
CviAII CATG 2 cut(s) 230, 838
CviQI GTAC 2 cut(s) 802, 850
DdeI CTNAG 6 cut(s) 9, 172, 218, 587, 671, 854
DpnI GATC 3 cut(s) 147, 816, 836
DpnII GATC 3 cut(s) 145, 814, 834
DriI GACNNNNNGTC 2 cut(s) 136, 167
Eam1104I CTCTTC 3 cut(s) 306, 441, 522
Eam1105I GACNNNNNGTC 2 cut(s) 136, 167
EarI CTCTTC 3 cut(s) 306, 441, 522
EciI GGCGGA 1 cut(s) 86
Eco130I CCWWGG 1 cut(s) 770
Eco147I AGGCCT 1 cut(s) 568
Eco32I GATATC 1 cut(s) 178
Eco57I CTGAAG 2 cut(s) 330, 386
Eco91I GGTNACC 1 cut(s) 952
EcoO65I GGTNACC 1 cut(s) 952
EcoRV GATATC 1 cut(s) 178
EcoT14I CCWWGG 1 cut(s) 770
ErhI CCWWGG 1 cut(s) 770
FaeI CATG 2 cut(s) 233, 841
FatI CATG 2 cut(s) 229, 837
FblI GTMKAC 1 cut(s) 936
Fnu4HI GCNGC 4 cut(s) 638, 720, 810, 924
FokI GGATG 3 cut(s) 737, 753, 980
Fsp4HI GCNGC 4 cut(s) 638, 720, 810, 924
FspBI CTAG 3 cut(s) 135, 560, 641
GlaI GCGC 1 cut(s) 546
GluI GCNGC 4 cut(s) 638, 720, 810, 924
HaeIII GGCC 1 cut(s) 568
HapII CCGG 2 cut(s) 59, 950
HgaI GACGC 1 cut(s) 140
HhaI GCGC 1 cut(s) 547
Hin1II CATG 2 cut(s) 233, 841
Hin6I GCGC 1 cut(s) 545
HinP1I GCGC 1 cut(s) 545
HincII GTYRAC 1 cut(s) 388
HindII GTYRAC 1 cut(s) 388
HinfI GANTC 5 cut(s) 25, 247, 366, 744, 775
HpaI GTTAAC 1 cut(s) 388
HpaII CCGG 2 cut(s) 59, 950
HphI GGTGA 1 cut(s) 217
Hpy166II GTNNAC 3 cut(s) 161, 388, 937
Hpy188I TCNGA 6 cut(s) 34, 124, 142, 175, 331, 667
Hpy188III TCNNGA 3 cut(s) 47, 101, 251
Hpy8I GTNNAC 3 cut(s) 161, 388, 937
Hpy99I CGWCG 1 cut(s) 459
HpyAV CCTTC 3 cut(s) 558, 764, 860
HpyCH4III ACNGT 2 cut(s) 349, 594
HpyCH4IV ACGT 2 cut(s) 454, 918
HpyCH4V TGCA 4 cut(s) 422, 608, 637, 795
HpyF10VI GCNNNNNNNGC 4 cut(s) 634, 643, 725, 878
HpyF3I CTNAG 6 cut(s) 9, 172, 218, 587, 671, 854
HpySE526I ACGT 2 cut(s) 454, 918
Hsp92II CATG 2 cut(s) 233, 841
HspAI GCGC 1 cut(s) 545
KspAI GTTAAC 1 cut(s) 388
Kzo9I GATC 3 cut(s) 145, 814, 834
LpnPI CCDG 6 cut(s) 72, 102, 382, 866, 945, 963
Lsp1109I GCAGC 2 cut(s) 649, 706
LweI GCATC 1 cut(s) 40
MaeI CTAG 3 cut(s) 135, 560, 641
MaeII ACGT 2 cut(s) 454, 918
MaeIII GTNAC 3 cut(s) 479, 952, 973
MalI GATC 3 cut(s) 147, 816, 836
MboI GATC 3 cut(s) 145, 814, 834
MboII GAAGA 7 cut(s) 266, 323, 458, 532, 539, 626, 800
MhlI GDGCHC 1 cut(s) 396
MluCI AATT 3 cut(s) 75, 197, 927
MlyI GAGTC 1 cut(s) 784
MmeI TCCRAC 2 cut(s) 57, 765
MnlI CCTC 7 cut(s) 54, 196, 269, 463, 523, 657, 958
MroXI GAANNNNTTC 1 cut(s) 246
MseI TTAA 2 cut(s) 377, 387
MslI CAYNNNNRTG 1 cut(s) 154
MspI CCGG 2 cut(s) 59, 950
MspR9I CCNGG 1 cut(s) 59
Mva1269I GAATGC 1 cut(s) 797
MvnI CGCG 1 cut(s) 545
MwoI GCNNNNNNNGC 4 cut(s) 634, 643, 725, 878
NciI CCSGG 1 cut(s) 59
NdeII GATC 3 cut(s) 145, 814, 834
NlaIII CATG 2 cut(s) 233, 841
NspV TTCGAA 2 cut(s) 318, 437
OliI CACNNNNGTG 1 cut(s) 154
PceI AGGCCT 1 cut(s) 568
PctI GAATGC 1 cut(s) 797
PdmI GAANNNNTTC 1 cut(s) 246
PfeI GAWTC 4 cut(s) 25, 247, 366, 744
PkrI GCNGC 4 cut(s) 639, 721, 811, 925
PleI GAGTC 1 cut(s) 783
PpsI GAGTC 1 cut(s) 783
PspEI GGTNACC 1 cut(s) 952
PstNI CAGNNNCTG 1 cut(s) 122
RsaI GTAC 2 cut(s) 803, 851
RsaNI GTAC 2 cut(s) 802, 850
RseI CAYNNNNRTG 1 cut(s) 154
SaqAI TTAA 2 cut(s) 377, 387
SatI GCNGC 4 cut(s) 638, 720, 810, 924
Sau3AI GATC 3 cut(s) 145, 814, 834
SchI GAGTC 1 cut(s) 784
ScrFI CCNGG 1 cut(s) 59
SduI GDGCHC 1 cut(s) 396
SfaNI GCATC 1 cut(s) 40
SfuI TTCGAA 2 cut(s) 318, 437
SmiMI CAYNNNNRTG 1 cut(s) 154
SmlI CTYRAG 2 cut(s) 45, 548
SmoI CTYRAG 2 cut(s) 45, 548
Sse9I AATT 3 cut(s) 75, 197, 927
SseBI AGGCCT 1 cut(s) 568
SsiI CCGC 3 cut(s) 71, 809, 923
SspMI CTAG 3 cut(s) 135, 560, 641
StuI AGGCCT 1 cut(s) 568
StyD4I CCNGG 1 cut(s) 57
StyI CCWWGG 1 cut(s) 770
TaaI ACNGT 2 cut(s) 349, 594
TaiI ACGT 2 cut(s) 457, 921
TaqI TCGA 4 cut(s) 79, 318, 437, 742
TasI AATT 3 cut(s) 75, 197, 927
TatI WGTACW 1 cut(s) 801
TauI GCSGC 2 cut(s) 812, 926
TfiI GAWTC 4 cut(s) 25, 247, 366, 744
Tru1I TTAA 2 cut(s) 377, 387
Tru9I TTAA 2 cut(s) 377, 387
TscAI CASTG 2 cut(s) 352, 401
TseI GCWGC 2 cut(s) 637, 719
TspDTI ATGAA 4 cut(s) 17, 459, 586, 736
TspGWI ACGGA 1 cut(s) 182
TspRI CASTG 2 cut(s) 352, 401
XapI RAATTY 1 cut(s) 75
XmiI GTMKAC 1 cut(s) 936
XmnI GAANNNNTTC 1 cut(s) 246
XspI CTAG 3 cut(s) 135, 560, 641
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.