MD10G1100700.v1.1

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0000541
Physical Location & Seq
Forward (+)
16322180 .. 16324790
2611 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1100700.v1.1.491

Sequence Viewer

Length: 918 bp
ATGGACGACACCGTCAGCACCAACCGCTCCTCTAATAAGCGACCCTGCTCCACCTCTCCGTCCCTGCAGATTCCCGCTCCCAAGAGGCGAGTTGTCCTGGGCGAACTCACCAACTCGTCGATTCAGAACTCGGATCGGAAGAAACCCATGAGGAAGAGTAACATGATGAAGAAAGAAATGGAGGTTCAAGAGACGGAGATTGTTGCCAGCTCTGTCGATCAAACCAAGTCTGAATGCTCGTCTTCTATATATCAGCATCTTCACTCCTTGGAGATGGAGGCGAACAAGAGGCCGTCACCCAGTTACATGGGTAGGGTGCAAAATGATATTTCACCAAACATGCGTGAAATTCTGGTGGATTGGTTGGTGGAGGTTGCAGAGGAATACCAGCTTGCTACAGACACCCTTTATCTCACTGTATCATATCTTGACAGATACCTTTCTTCATATGCTGTCAGCAGGAGCAAGCTACAGCTTCTTGGTGTTTCTTGCATGTTTGTTGCCTCAAAATATGAAGAGATTTGCCCTCCACGTGTTGAAGACTTCTGCTATGTAACAGATAATACTTACATGGTGGAAGAGATGTTGGAAATGGAGAGGGATGTGGTCAAATTTTTGAACTCTGACACGGGTCCTCCTACAACAAAGAATTTCCTCAGGCAAGAAAATGGTTTGACGTCTTTTTGGCTCTTTACAAGAGCTGCCCTGGAGAACAACAAAGTACGGCGACCACTTCAGACTTCTGCTGGTATGTTCGAATTCTTGAGTTGCTATCTTTTGGAGCTAAGTTTGTTAGACTACAACTGTGTCCAGTTCCTACCATCAGTTGTTGCTGCATCAGCTATTTTCCTTTCAAGGTTCACGATCCAACCTAATGTGCATCCTTGGGTAAGAAATAACGGAGTGGATAGAGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

306

Amino Acids

34.92

Weight (kDa)

5.79

Isoelectric Point (pI)

51.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 83 - 209 1e-46 Cyclin, N-terminal domain
Cyclin_C PF02984 250 - 296 1.5e-12 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000541)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47210 AT1G47210 AT1G47220 AT1G47230 AT1G47230 AT2G01310 AT5G43080 AT5G43080
fragaria_vesca FvH4_2g04770 FvH4_2g04770 FvH4_2g04770 FvH4_2g33510 FvH4_2g33510 FvH4_2g33510 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33530 FvH4_2g33530
malus_domestica MD05G1092000.v1.1 MD08G1091000.v1.1 MD08G1091200.v1.1 MD10G1100200.v1.1 MD10G1100700.v1.1 MD12G1105600.v1.1 MD15G1075100.v1.1 MD15G1075200.v1.1
prunus_persica Prupe.1G428000_v2.0.a1 Prupe.1G428100_v2.0.a1 Prupe.4G285800_v2.0.a1 Prupe.8G137700_v2.0.a1 Prupe.8G137700_v2.0.a1
pyrus_communis pycom05g09170 pycom08g07360 pycom08g07370 pycom15g07000 pycom15g07020
rosa_chinensis RchiOBHm_Chr3g0465621 RchiOBHm_Chr6g0254421 RchiOBHm_Chr6g0254451 RchiOBHm_Chr6g0308961 RchiOBHm_Chr6g0308971 RchiOBHm_Chr6g0308991 RchiOBHm_Chr7g0190851
rosa_laevigata RLG00000003915 RLG00000010598 RLG00000010599 RLG00000010600 RLG00000014913
rosa_multiflora Rmu_sc0009578.1_g000002 Rmu_sc0009578.1_g000003 Rmu_sc0029942.1_g000001 Rmu_sc0036151.1_g000001 Rmu_sc0036151.1_g000002 Rmu_sc0037719.1_g000001 Rmu_sc0042877.1_g000001 Rmu_ssc0000481.1_g000003
rosa_roxburghii Rroxscaffold_7G00159740 Rroxscaffold_7G00159750 Rroxscaffold_7G00159760 Rroxscaffold_7G00159770 Rroxscaffold_7G00210810
rosa_rugosa Rorug05G0552200 Rorug05G0552300 Rorug05G0552400
rosa_samantha Rh3CG081000 Rh6AG069300 Rh6AG481300 Rh6AG481600 Rh6BG062000 Rh6BG490400 Rh6BG490500 Rh6BG490600 Rh6CG062100 Rh6CG495700 Rh6CG495900 Rh6DG059100 Rh6DG481600 Rh6DG481700 Rh6DG481800
rosa_wichuraiana Rw6G006090 Rw6G041930 Rw6G041940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 11
AatII GACGTC 1 cut(s) 680
AccBSI CCGCTC 2 cut(s) 27, 77
AciI CCGC 2 cut(s) 25, 75
AclWI GGATC 2 cut(s) 141, 859
AcsI RAATTY 4 cut(s) 348, 611, 649, 758
AcuI CTGAAG 1 cut(s) 719
AcvI CACGTG 1 cut(s) 533
AcyI GRCGYC 1 cut(s) 677
AfaI GTAC 1 cut(s) 723
AflIII ACRYGT 1 cut(s) 532
AgsI TTSAA 4 cut(s) 188, 539, 619, 855
AjnI CCWGG 2 cut(s) 96, 705
AluBI AGCT 7 cut(s) 210, 391, 469, 475, 701, 784, 842
AluI AGCT 7 cut(s) 210, 391, 469, 475, 701, 784, 842
Alw26I GTCTC 1 cut(s) 185
AlwI GGATC 2 cut(s) 141, 859
AoxI GGCC 1 cut(s) 290
ApeKI GCWGC 2 cut(s) 701, 833
ApoI RAATTY 4 cut(s) 348, 611, 649, 758
AspS9I GGNCC 1 cut(s) 632
AsuHPI GGTGA 3 cut(s) 100, 288, 324
AsuII TTCGAA 1 cut(s) 756
AvaII GGWCC 1 cut(s) 632
AxyI CCTNAGG 1 cut(s) 656
BbrPI CACGTG 1 cut(s) 533
BbsI GAAGAC 2 cut(s) 234, 546
BbvI GCAGC 2 cut(s) 688, 820
BccI CCATC 2 cut(s) 268, 829
BceAI ACGGC 2 cut(s) 277, 740
BciT130I CCWGG 2 cut(s) 98, 707
BcoDI GTCTC 1 cut(s) 185
BfmI CTRYAG 3 cut(s) 65, 396, 470
BisI GCNGC 2 cut(s) 702, 834
BlsI GCNGC 2 cut(s) 703, 835
Bme1390I CCNGG 2 cut(s) 98, 707
Bme18I GGWCC 1 cut(s) 632
BmgT120I GGNCC 1 cut(s) 632
BmiI GGNNCC 1 cut(s) 633
BmrFI CCNGG 2 cut(s) 98, 707
BmrI ACTGGG 1 cut(s) 294
BmsI GCATC 3 cut(s) 265, 845, 889
BmuI ACTGGG 1 cut(s) 294
BoxI GACNNNNGTC 1 cut(s) 630
BpiI GAAGAC 2 cut(s) 234, 546
BpmI CTGGAG 1 cut(s) 728
Bpu14I TTCGAA 1 cut(s) 756
BpuEI CTTGAG 1 cut(s) 784
BsaAI YACGTR 1 cut(s) 533
BsaHI GRCGYC 1 cut(s) 677
BsaJI CCNNGG 4 cut(s) 97, 267, 705, 884
BsaXI ACNNNNNCTCC 2 cut(s) 619, 649
Bse1I ACTGG 2 cut(s) 300, 811
Bse21I CCTNAGG 1 cut(s) 656
BseBI CCWGG 2 cut(s) 98, 707
BseDI CCNNGG 4 cut(s) 97, 267, 705, 884
BseGI GGATG 2 cut(s) 607, 880
BseMII CTCAG 1 cut(s) 670
BseNI ACTGG 2 cut(s) 300, 811
BseRI GAGGAG 1 cut(s) 19
BseXI GCAGC 2 cut(s) 688, 820
BshFI GGCC 1 cut(s) 292
BslFI GGGAC 1 cut(s) 46
BsmAI GTCTC 1 cut(s) 185
BsmBI CGTCTC 1 cut(s) 185
BsmFI GGGAC 1 cut(s) 46
BsmI GAATGC 1 cut(s) 239
BsnI GGCC 1 cut(s) 292
Bsp119I TTCGAA 1 cut(s) 756
Bsp143I GATC 3 cut(s) 133, 217, 864
BspACI CCGC 2 cut(s) 25, 75
BspANI GGCC 1 cut(s) 292
BspCNI CTCAG 1 cut(s) 669
BspLI GGNNCC 1 cut(s) 633
BspMAI CTGCAG 1 cut(s) 69
BspPI GGATC 2 cut(s) 141, 859
BspT104I TTCGAA 1 cut(s) 756
BsrBI CCGCTC 2 cut(s) 27, 77
BsrI ACTGG 2 cut(s) 300, 811
BssECI CCNNGG 4 cut(s) 97, 267, 705, 884
BssMI GATC 3 cut(s) 133, 217, 864
BssNI GRCGYC 1 cut(s) 677
BssT1I CCWWGG 2 cut(s) 267, 884
Bst2UI CCWGG 2 cut(s) 98, 707
Bst4CI ACNGT 3 cut(s) 13, 418, 806
Bst6I CTCTTC 3 cut(s) 149, 510, 573
BstACI GRCGYC 1 cut(s) 677
BstBAI YACGTR 1 cut(s) 533
BstBI TTCGAA 1 cut(s) 756
BstC8I GCNNGC 3 cut(s) 208, 393, 467
BstDEI CTNAG 2 cut(s) 656, 785
BstF5I GGATG 2 cut(s) 607, 880
BstKTI GATC 3 cut(s) 136, 220, 867
BstMAI GTCTC 1 cut(s) 185
BstMBI GATC 3 cut(s) 133, 217, 864
BstMWI GCNNNNNNNGC 2 cut(s) 24, 839
BstNI CCWGG 2 cut(s) 98, 707
BstNSI RCATGY 2 cut(s) 343, 496
BstPAI GACNNNNGTC 1 cut(s) 630
BstSCI CCNGG 2 cut(s) 96, 705
BstSFI CTRYAG 3 cut(s) 65, 396, 470
BstV1I GCAGC 2 cut(s) 688, 820
BstV2I GAAGAC 2 cut(s) 234, 546
BstXI CCANNNNNNTGG 1 cut(s) 307
Bsu36I CCTNAGG 1 cut(s) 656
BsuRI GGCC 1 cut(s) 292
BtsCI GGATG 2 cut(s) 607, 880
BtsIMutI CAGTG 1 cut(s) 414
Cac8I GCNNGC 3 cut(s) 208, 393, 467
Cfr13I GGNCC 1 cut(s) 632
Csp6I GTAC 1 cut(s) 722
CviAII CATG 6 cut(s) 148, 163, 307, 340, 493, 571
CviJI RGCY 9 cut(s) 210, 292, 391, 469, 475, 688, 701, 784, 842
CviKI_1 RGCY 9 cut(s) 210, 292, 391, 469, 475, 688, 701, 784, 842
CviQI GTAC 1 cut(s) 722
DdeI CTNAG 2 cut(s) 656, 785
DpnI GATC 3 cut(s) 135, 219, 866
DpnII GATC 3 cut(s) 133, 217, 864
DrdI GACNNNNNNGTC 1 cut(s) 11
DseDI GACNNNNNNGTC 1 cut(s) 11
Eam1104I CTCTTC 3 cut(s) 149, 510, 573
EarI CTCTTC 3 cut(s) 149, 510, 573
Eco130I CCWWGG 2 cut(s) 267, 884
Eco47I GGWCC 1 cut(s) 632
Eco57I CTGAAG 1 cut(s) 719
Eco72I CACGTG 1 cut(s) 533
Eco81I CCTNAGG 1 cut(s) 656
EcoO109I RGGNCCY 1 cut(s) 632
EcoRI GAATTC 1 cut(s) 758
EcoRII CCWGG 2 cut(s) 96, 705
EcoT14I CCWWGG 2 cut(s) 267, 884
ErhI CCWWGG 2 cut(s) 267, 884
Esp3I CGTCTC 1 cut(s) 185
FaeI CATG 6 cut(s) 151, 166, 310, 343, 496, 574
FaqI GGGAC 1 cut(s) 46
FatI CATG 6 cut(s) 147, 162, 306, 339, 492, 570
FauI CCCGC 1 cut(s) 82
FauNDI CATATG 1 cut(s) 448
Fnu4HI GCNGC 2 cut(s) 702, 834
FokI GGATG 2 cut(s) 614, 867
Fsp4HI GCNGC 2 cut(s) 702, 834
GluI GCNGC 2 cut(s) 702, 834
GsuI CTGGAG 1 cut(s) 728
HaeIII GGCC 1 cut(s) 292
Hin1I GRCGYC 1 cut(s) 677
Hin1II CATG 6 cut(s) 151, 166, 310, 343, 496, 574
HinfI GANTC 2 cut(s) 70, 121
HphI GGTGA 3 cut(s) 100, 288, 324
Hpy166II GTNNAC 1 cut(s) 861
Hpy188I TCNGA 6 cut(s) 126, 133, 138, 232, 625, 738
Hpy188III TCNNGA 4 cut(s) 188, 428, 763, 862
Hpy8I GTNNAC 1 cut(s) 861
Hpy99I CGWCG 1 cut(s) 121
HpyCH4III ACNGT 3 cut(s) 13, 418, 806
HpyCH4IV ACGT 2 cut(s) 532, 677
HpyCH4V TGCA 6 cut(s) 67, 319, 377, 492, 836, 880
HpyF10VI GCNNNNNNNGC 2 cut(s) 24, 839
HpyF3I CTNAG 2 cut(s) 656, 785
HpySE526I ACGT 2 cut(s) 532, 677
Hsp92I GRCGYC 1 cut(s) 677
Hsp92II CATG 6 cut(s) 151, 166, 310, 343, 496, 574
Kzo9I GATC 3 cut(s) 133, 217, 864
LmnI GCTCC 5 cut(s) 32, 53, 82, 462, 781
Lsp1109I GCAGC 2 cut(s) 688, 820
LweI GCATC 3 cut(s) 265, 845, 889
MaeII ACGT 2 cut(s) 532, 677
MaeIII GTNAC 4 cut(s) 158, 294, 302, 553
MalI GATC 3 cut(s) 135, 219, 866
MbiI CCGCTC 2 cut(s) 27, 77
MboI GATC 3 cut(s) 133, 217, 864
MboII GAAGA 9 cut(s) 151, 166, 181, 234, 251, 435, 527, 551, 590
MluCI AATT 4 cut(s) 348, 611, 649, 758
MmeI TCCRAC 2 cut(s) 567, 892
MspR9I CCNGG 2 cut(s) 98, 707
Mva1269I GAATGC 1 cut(s) 239
MvaI CCWGG 2 cut(s) 98, 707
MwoI GCNNNNNNNGC 2 cut(s) 24, 839
NdeI CATATG 1 cut(s) 448
NdeII GATC 3 cut(s) 133, 217, 864
NlaIII CATG 6 cut(s) 151, 166, 310, 343, 496, 574
NlaIV GGNNCC 1 cut(s) 633
NmuCI GTSAC 1 cut(s) 294
NspI RCATGY 2 cut(s) 343, 496
NspV TTCGAA 1 cut(s) 756
PctI GAATGC 1 cut(s) 239
PfeI GAWTC 2 cut(s) 70, 121
PflFI GACNNNGTC 1 cut(s) 11
PkrI GCNGC 2 cut(s) 703, 835
PmaCI CACGTG 1 cut(s) 533
PmlI CACGTG 1 cut(s) 533
Ppu21I YACGTR 1 cut(s) 533
PpuMI RGGWCCY 1 cut(s) 632
PshAI GACNNNNGTC 1 cut(s) 630
Psp5II RGGWCCY 1 cut(s) 632
Psp6I CCWGG 2 cut(s) 96, 705
PspCI CACGTG 1 cut(s) 533
PspGI CCWGG 2 cut(s) 96, 705
PspN4I GGNNCC 1 cut(s) 633
PspPI GGNCC 1 cut(s) 632
PspPPI RGGWCCY 1 cut(s) 632
PstI CTGCAG 1 cut(s) 69
PsyI GACNNNGTC 1 cut(s) 11
RsaI GTAC 1 cut(s) 723
RsaNI GTAC 1 cut(s) 722
SatI GCNGC 2 cut(s) 702, 834
Sau3AI GATC 3 cut(s) 133, 217, 864
Sau96I GGNCC 1 cut(s) 632
ScrFI CCNGG 2 cut(s) 98, 707
SfaNI GCATC 3 cut(s) 265, 845, 889
SfcI CTRYAG 3 cut(s) 65, 396, 470
SfuI TTCGAA 1 cut(s) 756
SinI GGWCC 1 cut(s) 632
SmlI CTYRAG 1 cut(s) 763
SmoI CTYRAG 1 cut(s) 763
Sse9I AATT 4 cut(s) 348, 611, 649, 758
SsiI CCGC 2 cut(s) 25, 75
StyD4I CCNGG 2 cut(s) 96, 705
StyI CCWWGG 2 cut(s) 267, 884
TaaI ACNGT 3 cut(s) 13, 418, 806
TaiI ACGT 2 cut(s) 535, 680
TaqI TCGA 3 cut(s) 119, 216, 756
TasI AATT 4 cut(s) 348, 611, 649, 758
TfiI GAWTC 2 cut(s) 70, 121
TscAI CASTG 1 cut(s) 421
TseFI GTSAC 1 cut(s) 294
TseI GCWGC 2 cut(s) 701, 833
Tsp45I GTSAC 1 cut(s) 294
TspDTI ATGAA 3 cut(s) 182, 435, 528
TspGWI ACGGA 3 cut(s) 48, 209, 915
TspRI CASTG 1 cut(s) 421
Tth111I GACNNNGTC 1 cut(s) 11
VpaK11BI GGWCC 1 cut(s) 632
XapI RAATTY 4 cut(s) 348, 611, 649, 758
XceI RCATGY 2 cut(s) 343, 496
ZraI GACGTC 1 cut(s) 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.