Rmu_sc0037719.1_g000001

Belongs to the cyclin family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0037719.1
Physical Location & Seq
Forward (+)
1 .. 821
821 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0037719.1_g000001.1.cds

Sequence Viewer

Length: 447 bp
atcctcaaatccctcaaatttgaaatggggaatcctactgttccgaccttcttaagaaagtttacgggtgttgctcaagggaattatacaactcccaatttgcagtttgagttcttggtttcctaccttgcagagttaagcttgttggattacaaatgtgtgaaattcctgccttctatggtagcttcatcagttgttttccttgcaagattaatgattagatcaaagatgaatccttggtgttcaacattgcaacaatatactggatacattgcagctgatttgaaagattgtgttcttgtccttcatgacttgtacttgggtagaagaggaggattgttacaagttgtgcgagagaagtacagacagcatgagttcaaatatgtggcaaaccttccctgccctccagagctaccagctcctttgtttgataatgtgaaggcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

148

Amino Acids

16.87

Weight (kDa)

9.21

Isoelectric Point (pI)

34.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000541)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47210 AT1G47210 AT1G47220 AT1G47230 AT1G47230 AT2G01310 AT5G43080 AT5G43080
fragaria_vesca FvH4_2g04770 FvH4_2g04770 FvH4_2g04770 FvH4_2g33510 FvH4_2g33510 FvH4_2g33510 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33530 FvH4_2g33530
malus_domestica MD05G1092000.v1.1 MD08G1091000.v1.1 MD08G1091200.v1.1 MD10G1100200.v1.1 MD10G1100700.v1.1 MD12G1105600.v1.1 MD15G1075100.v1.1 MD15G1075200.v1.1
prunus_persica Prupe.1G428000_v2.0.a1 Prupe.1G428100_v2.0.a1 Prupe.4G285800_v2.0.a1 Prupe.8G137700_v2.0.a1 Prupe.8G137700_v2.0.a1
pyrus_communis pycom05g09170 pycom08g07360 pycom08g07370 pycom15g07000 pycom15g07020
rosa_chinensis RchiOBHm_Chr3g0465621 RchiOBHm_Chr6g0254421 RchiOBHm_Chr6g0254451 RchiOBHm_Chr6g0308961 RchiOBHm_Chr6g0308971 RchiOBHm_Chr6g0308991 RchiOBHm_Chr7g0190851
rosa_laevigata RLG00000003915 RLG00000010598 RLG00000010599 RLG00000010600 RLG00000014913
rosa_multiflora Rmu_sc0009578.1_g000002 Rmu_sc0009578.1_g000003 Rmu_sc0029942.1_g000001 Rmu_sc0036151.1_g000001 Rmu_sc0036151.1_g000002 Rmu_sc0037719.1_g000001 Rmu_sc0042877.1_g000001 Rmu_ssc0000481.1_g000003
rosa_roxburghii Rroxscaffold_7G00159740 Rroxscaffold_7G00159750 Rroxscaffold_7G00159760 Rroxscaffold_7G00159770 Rroxscaffold_7G00210810
rosa_rugosa Rorug05G0552200 Rorug05G0552300 Rorug05G0552400
rosa_samantha Rh3CG081000 Rh6AG069300 Rh6AG481300 Rh6AG481600 Rh6BG062000 Rh6BG490400 Rh6BG490500 Rh6BG490600 Rh6CG062100 Rh6CG495700 Rh6CG495900 Rh6DG059100 Rh6DG481600 Rh6DG481700 Rh6DG481800
rosa_wichuraiana Rw6G006090 Rw6G041930 Rw6G041940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 17, 164
AfaI GTAC 2 cut(s) 317, 362
AflII CTTAAG 1 cut(s) 52
AgsI TTSAA 4 cut(s) 23, 246, 286, 379
AluBI AGCT 5 cut(s) 141, 185, 278, 412, 419
AluI AGCT 5 cut(s) 141, 185, 278, 412, 419
ApeKI GCWGC 1 cut(s) 275
ApoI RAATTY 2 cut(s) 17, 164
AseI ATTAAT 1 cut(s) 212
BbvI GCAGC 1 cut(s) 287
BciVI GTATCC 1 cut(s) 260
BfrI CTTAAG 1 cut(s) 52
BfuI GTATCC 1 cut(s) 260
BisI GCNGC 1 cut(s) 276
BlsI GCNGC 1 cut(s) 277
BpmI CTGGAG 1 cut(s) 390
BpuEI CTTGAG 1 cut(s) 60
BsaJI CCNNGG 1 cut(s) 236
Bse1I ACTGG 1 cut(s) 268
Bse3DI GCAATG 2 cut(s) 248, 270
BseDI CCNNGG 1 cut(s) 236
BseMI GCAATG 2 cut(s) 248, 270
BseNI ACTGG 1 cut(s) 268
BseRI GAGGAG 1 cut(s) 345
BseXI GCAGC 1 cut(s) 287
Bsp143I GATC 1 cut(s) 221
BspHI TCATGA 1 cut(s) 307
BspTI CTTAAG 1 cut(s) 52
BsrDI GCAATG 2 cut(s) 248, 270
BsrI ACTGG 1 cut(s) 268
BssECI CCNNGG 1 cut(s) 236
BssMI GATC 1 cut(s) 221
BssT1I CCWWGG 1 cut(s) 236
Bst4CI ACNGT 1 cut(s) 40
Bst6I CTCTTC 1 cut(s) 322
BstAFI CTTAAG 1 cut(s) 52
BstKTI GATC 1 cut(s) 224
BstMBI GATC 1 cut(s) 221
BstV1I GCAGC 1 cut(s) 287
BsuI GTATCC 1 cut(s) 260
CciI TCATGA 1 cut(s) 307
Csp6I GTAC 2 cut(s) 316, 361
CviAII CATG 3 cut(s) 308, 371, 444
CviJI RGCY 5 cut(s) 141, 185, 278, 412, 419
CviKI_1 RGCY 5 cut(s) 141, 185, 278, 412, 419
CviQI GTAC 2 cut(s) 316, 361
DpnI GATC 1 cut(s) 223
DpnII GATC 1 cut(s) 221
Eam1104I CTCTTC 1 cut(s) 322
EarI CTCTTC 1 cut(s) 322
Eco130I CCWWGG 1 cut(s) 236
EcoT14I CCWWGG 1 cut(s) 236
ErhI CCWWGG 1 cut(s) 236
FaeI CATG 3 cut(s) 311, 374, 447
FaiI YATR 7 cut(s) 87, 179, 261, 309, 372, 384, 445
FatI CATG 3 cut(s) 307, 370, 443
Fnu4HI GCNGC 1 cut(s) 276
Fsp4HI GCNGC 1 cut(s) 276
GluI GCNGC 1 cut(s) 276
GsuI CTGGAG 1 cut(s) 390
Hin1II CATG 3 cut(s) 311, 374, 447
HindIII AAGCTT 1 cut(s) 139
HinfI GANTC 2 cut(s) 31, 232
Hpy166II GTNNAC 1 cut(s) 63
Hpy188I TCNGA 1 cut(s) 45
Hpy188III TCNNGA 2 cut(s) 308, 407
Hpy8I GTNNAC 1 cut(s) 63
HpyAV CCTTC 5 cut(s) 58, 183, 314, 404, 433
HpyCH4III ACNGT 1 cut(s) 40
HpyCH4V TGCA 5 cut(s) 103, 131, 206, 253, 275
Hsp92II CATG 3 cut(s) 311, 374, 447
Kzo9I GATC 1 cut(s) 221
LmnI GCTCC 1 cut(s) 424
LpnPI CCDG 5 cut(s) 182, 249, 412, 420, 429
Lsp1109I GCAGC 1 cut(s) 287
MaeIII GTNAC 1 cut(s) 339
MalI GATC 1 cut(s) 223
MboI GATC 1 cut(s) 221
MboII GAAGA 1 cut(s) 339
MluCI AATT 4 cut(s) 17, 82, 97, 164
MmeI TCCRAC 2 cut(s) 68, 126
MnlI CCTC 5 cut(s) 14, 23, 323, 326, 414
MseI TTAA 3 cut(s) 53, 137, 212
MspA1I CMGCKG 1 cut(s) 278
MspCI CTTAAG 1 cut(s) 52
NdeII GATC 1 cut(s) 221
NlaIII CATG 3 cut(s) 311, 374, 447
PagI TCATGA 1 cut(s) 307
PfeI GAWTC 2 cut(s) 31, 232
PkrI GCNGC 1 cut(s) 277
PshBI ATTAAT 1 cut(s) 212
PvuII CAGCTG 1 cut(s) 278
RsaI GTAC 2 cut(s) 317, 362
RsaNI GTAC 2 cut(s) 316, 361
SaqAI TTAA 3 cut(s) 53, 137, 212
SatI GCNGC 1 cut(s) 276
Sau3AI GATC 1 cut(s) 221
SetI ASST 8 cut(s) 50, 129, 143, 187, 280, 396, 414, 421
SmlI CTYRAG 2 cut(s) 52, 75
SmoI CTYRAG 2 cut(s) 52, 75
Sse9I AATT 4 cut(s) 17, 82, 97, 164
StyI CCWWGG 1 cut(s) 236
TaaI ACNGT 1 cut(s) 40
TasI AATT 4 cut(s) 17, 82, 97, 164
TatI WGTACW 2 cut(s) 315, 360
TfiI GAWTC 2 cut(s) 31, 232
Tru1I TTAA 3 cut(s) 53, 137, 212
Tru9I TTAA 3 cut(s) 53, 137, 212
TseI GCWGC 1 cut(s) 275
TspDTI ATGAA 3 cut(s) 177, 245, 296
Vha464I CTTAAG 1 cut(s) 52
VspI ATTAAT 1 cut(s) 212
XapI RAATTY 2 cut(s) 17, 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.