Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0000541

Physical Location & Seq

Genomic Coordinates Reverse (-)

66136301 .. 66138113

Gene Structure 1813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG495700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGCGGAGAAAGAGAACTGCGTCCGCGTCACGCGCGCCATGAAAAGGAAGGCCGAAGCCGCCGCCGTCGACCAAACGCCCCCCAAGAAGCGCGTCGTACTGGGCGAGCTCCCCAACCTCCAAAACGCCGTCGTTCCGGCCAATGAGGTTGAGCCCCACAAGCGGAAATCCAGAACTAAATCCCGGGCGGCGAAGAAAGCGCTGCCTATCCCGGAAACCGCGCCGGAGGTTGAAACGACGCCGTCGGATCCCCAAATGTGCGAGCCTTATTCACGTGACATATACGAGTACCTTCACAAGCTCGAGGATCCTGATCTGCATTTTGAATTTCTGGGCCACTACCTTGCAGAGCTAAGTTTGTTAGACTACAACTGTGTCAAATTTTTGCCTTCTTTGGTGGCTGCGTCTGTTGTATTTCTTACAAGATTTATCATCCAGCCAAGGATGCATCCATGGACTTCGTCGCTGCTACAATATTCAGGATACAAACCATCTGAGCTGAGGGAATGTGTCCTTATCATACATGACTTGTATCTGGGTAGAAGAGGAGGGTCATTGCAAGCTATAAGAGAGAAGTACAAAAGACATAAGTTCAAATTCGTGGCAGTGATGCCTTCTCCTCCAGAGGTACCAGCATACTATTTTGAAGATCTTATAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

220

Amino Acids

25.27

Weight (kDa)

8.77

Isoelectric Point (pI)

59.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_C	PF02984	99 - 206	2.2e-31	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000541)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47210 AT1G47210 AT1G47220 AT1G47230 AT1G47230 AT2G01310 AT5G43080 AT5G43080
fragaria_vesca	FvH4_2g04770 FvH4_2g04770 FvH4_2g04770 FvH4_2g33510 FvH4_2g33510 FvH4_2g33510 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33530 FvH4_2g33530
malus_domestica	MD05G1092000.v1.1 MD08G1091000.v1.1 MD08G1091200.v1.1 MD10G1100200.v1.1 MD10G1100700.v1.1 MD12G1105600.v1.1 MD15G1075100.v1.1 MD15G1075200.v1.1
prunus_persica	Prupe.1G428000_v2.0.a1 Prupe.1G428100_v2.0.a1 Prupe.4G285800_v2.0.a1 Prupe.8G137700_v2.0.a1 Prupe.8G137700_v2.0.a1
pyrus_communis	pycom05g09170 pycom08g07360 pycom08g07370 pycom15g07000 pycom15g07020
rosa_chinensis	RchiOBHm_Chr3g0465621 RchiOBHm_Chr6g0254421 RchiOBHm_Chr6g0254451 RchiOBHm_Chr6g0308961 RchiOBHm_Chr6g0308971 RchiOBHm_Chr6g0308991 RchiOBHm_Chr7g0190851
rosa_laevigata	RLG00000003915 RLG00000010598 RLG00000010599 RLG00000010600 RLG00000014913
rosa_multiflora	Rmu_sc0009578.1_g000002 Rmu_sc0009578.1_g000003 Rmu_sc0029942.1_g000001 Rmu_sc0036151.1_g000001 Rmu_sc0036151.1_g000002 Rmu_sc0037719.1_g000001 Rmu_sc0042877.1_g000001 Rmu_ssc0000481.1_g000003
rosa_roxburghii	Rroxscaffold_7G00159740 Rroxscaffold_7G00159750 Rroxscaffold_7G00159760 Rroxscaffold_7G00159770 Rroxscaffold_7G00210810
rosa_rugosa	Rorug05G0552200 Rorug05G0552300 Rorug05G0552400
rosa_samantha	Rh3CG081000 Rh6AG069300 Rh6AG481300 Rh6AG481600 Rh6BG062000 Rh6BG490400 Rh6BG490500 Rh6BG490600 Rh6CG062100 Rh6CG495700 Rh6CG495900 Rh6DG059100 Rh6DG481600 Rh6DG481700 Rh6DG481800
rosa_wichuraiana	Rw6G006090 Rw6G041930 Rw6G041940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	628
AccB1I	GGYRCC	1 cut(s)	628
AccI	GTMKAC	1 cut(s)	69
AccII	CGCG	5 cut(s)	27, 34, 36, 93, 221
AciI	CCGC	7 cut(s)	5, 25, 60, 63, 163, 188, 219
AclWI	GGATC	4 cut(s)	242, 255, 302, 315
AcoI	YGGCCR	1 cut(s)	138
AcsI	RAATTY	3 cut(s)	326, 380, 596
AcvI	CACGTG	1 cut(s)	275
AcyI	GRCGYC	1 cut(s)	239
AfaI	GTAC	4 cut(s)	99, 290, 578, 630
AfeI	AGCGCT	1 cut(s)	201
AfiI	CCNNNNNNNGG	2 cut(s)	45, 162
AgsI	TTSAA	4 cut(s)	233, 326, 595, 647
AluBI	AGCT	5 cut(s)	109, 301, 352, 499, 563
AluI	AGCT	5 cut(s)	109, 301, 352, 499, 563
Alw21I	GWGCWC	1 cut(s)	111
AlwI	GGATC	4 cut(s)	242, 255, 302, 315
Ama87I	CYCGRG	2 cut(s)	183, 302
Aor51HI	AGCGCT	1 cut(s)	201
AoxI	GGCC	3 cut(s)	51, 138, 334
ApeKI	GCWGC	3 cut(s)	202, 401, 466
ApoI	RAATTY	3 cut(s)	326, 380, 596
Asp718I	GGTACC	1 cut(s)	628
AspLEI	GCGC	5 cut(s)	36, 38, 93, 202, 223
AspS9I	GGNCC	1 cut(s)	334
AsuC2I	CCSGG	3 cut(s)	184, 185, 212
AvaI	CYCGRG	2 cut(s)	183, 302
BamHI	GGATCC	2 cut(s)	247, 307
BanI	GGYRCC	1 cut(s)	628
BanII	GRGCYC	2 cut(s)	111, 156
BbrPI	CACGTG	1 cut(s)	275
Bbv12I	GWGCWC	1 cut(s)	111
BbvCI	CCTCAGC	1 cut(s)	500
BbvI	GCAGC	3 cut(s)	189, 388, 453
BccI	CCATC	1 cut(s)	499
BceAI	ACGGC	3 cut(s)	50, 113, 226
BciVI	GTATCC	1 cut(s)	476
BcnI	CCSGG	3 cut(s)	184, 185, 212
BfoI	RGCGCY	1 cut(s)	203
BfuI	GTATCC	1 cut(s)	476
BglII	AGATCT	1 cut(s)	649
BisI	GCNGC	6 cut(s)	60, 63, 189, 203, 402, 467
BlsI	GCNGC	6 cut(s)	61, 64, 190, 204, 403, 468
Bme1390I	CCNGG	3 cut(s)	184, 185, 212
BmeT110I	CYCGRG	2 cut(s)	183, 302
BmgT120I	GGNCC	1 cut(s)	334
BmiI	GGNNCC	3 cut(s)	249, 309, 630
BmrFI	CCNGG	3 cut(s)	184, 185, 212
BmrI	ACTGGG	1 cut(s)	110
BmsI	GCATC	3 cut(s)	435, 457, 600
BmuI	ACTGGG	1 cut(s)	110
BpmI	CTGGAG	1 cut(s)	606
Bpu10I	CCTNAGC	1 cut(s)	500
BpuMI	CCSGG	3 cut(s)	184, 185, 212
BsaAI	YACGTR	1 cut(s)	275
BsaBI	GATNNNNATC	1 cut(s)	312
BsaHI	GRCGYC	1 cut(s)	239
BsaJI	CCNNGG	3 cut(s)	183, 440, 452
Bsc4I	CCNNNNNNNGG	2 cut(s)	45, 162
Bse1I	ACTGG	1 cut(s)	105
Bse3DI	GCAATG	1 cut(s)	554
Bse8I	GATNNNNATC	1 cut(s)	312
BseDI	CCNNGG	3 cut(s)	183, 440, 452
BseGI	GGATG	3 cut(s)	432, 448, 450
BseJI	GATNNNNATC	1 cut(s)	312
BseLI	CCNNNNNNNGG	2 cut(s)	45, 162
BseMI	GCAATG	1 cut(s)	554
BseMII	CTCAG	2 cut(s)	486, 491
BseNI	ACTGG	1 cut(s)	105
BsePI	GCGCGC	1 cut(s)	34
BseRI	GAGGAG	2 cut(s)	561, 609
BseXI	GCAGC	3 cut(s)	189, 388, 453
Bsh1236I	CGCG	5 cut(s)	27, 34, 36, 93, 221
BshFI	GGCC	3 cut(s)	53, 140, 336
BshNI	GGYRCC	1 cut(s)	628
BsiHKAI	GWGCWC	1 cut(s)	111
BsiHKCI	CYCGRG	2 cut(s)	183, 302
BsiSI	CCGG	4 cut(s)	137, 184, 212, 224
BslI	CCNNNNNNNGG	2 cut(s)	45, 162
BsnI	GGCC	3 cut(s)	53, 140, 336
BsoBI	CYCGRG	2 cut(s)	183, 302
Bsp1286I	GDGCHC	2 cut(s)	111, 156
Bsp143I	GATC	4 cut(s)	247, 307, 313, 649
Bsp19I	CCATGG	1 cut(s)	452
BspACI	CCGC	7 cut(s)	5, 25, 60, 63, 163, 188, 219
BspANI	GGCC	3 cut(s)	53, 140, 336
BspCNI	CTCAG	2 cut(s)	487, 492
BspFNI	CGCG	5 cut(s)	27, 34, 36, 93, 221
BspLI	GGNNCC	3 cut(s)	249, 309, 630
BspPI	GGATC	4 cut(s)	242, 255, 302, 315
BspT107I	GGYRCC	1 cut(s)	628
BsrDI	GCAATG	1 cut(s)	554
BsrI	ACTGG	1 cut(s)	105
BssECI	CCNNGG	3 cut(s)	183, 440, 452
BssHII	GCGCGC	1 cut(s)	34
BssMI	GATC	4 cut(s)	247, 307, 313, 649
BssNI	GRCGYC	1 cut(s)	239
BssT1I	CCWWGG	2 cut(s)	440, 452
Bst4CI	ACNGT	1 cut(s)	374
Bst6I	CTCTTC	1 cut(s)	538
BstACI	GRCGYC	1 cut(s)	239
BstBAI	YACGTR	1 cut(s)	275
BstC8I	GCNNGC	4 cut(s)	36, 107, 263, 561
BstDEI	CTNAG	3 cut(s)	353, 495, 500
BstDSI	CCRYGG	1 cut(s)	452
BstF5I	GGATG	3 cut(s)	432, 448, 450
BstFNI	CGCG	5 cut(s)	27, 34, 36, 93, 221
BstH2I	RGCGCY	1 cut(s)	203
BstHHI	GCGC	5 cut(s)	36, 38, 93, 202, 223
BstKTI	GATC	4 cut(s)	250, 310, 316, 652
BstMBI	GATC	4 cut(s)	247, 307, 313, 649
BstMWI	GCNNNNNNNGC	5 cut(s)	33, 59, 160, 197, 445
BstSCI	CCNGG	3 cut(s)	182, 183, 210
BstUI	CGCG	5 cut(s)	27, 34, 36, 93, 221
BstV1I	GCAGC	3 cut(s)	189, 388, 453
BstX2I	RGATCY	3 cut(s)	247, 307, 649
BstYI	RGATCY	3 cut(s)	247, 307, 649
BsuI	GTATCC	1 cut(s)	476
BsuRI	GGCC	3 cut(s)	53, 140, 336
BtgI	CCRYGG	1 cut(s)	452
BtsCI	GGATG	3 cut(s)	432, 448, 450
BtsI	GCAGTG	1 cut(s)	612
BtsIMutI	CAGTG	1 cut(s)	612
Cac8I	GCNNGC	4 cut(s)	36, 107, 263, 561
CfoI	GCGC	5 cut(s)	36, 38, 93, 202, 223
Cfr13I	GGNCC	1 cut(s)	334
Cfr9I	CCCGGG	1 cut(s)	183
CseI	GACGC	5 cut(s)	10, 16, 82, 247, 393
Csp6I	GTAC	4 cut(s)	98, 289, 577, 629
CviAII	CATG	3 cut(s)	40, 453, 524
CviQI	GTAC	4 cut(s)	98, 289, 577, 629
DdeI	CTNAG	3 cut(s)	353, 495, 500
DpnI	GATC	4 cut(s)	249, 309, 315, 651
DpnII	GATC	4 cut(s)	247, 307, 313, 649
EaeI	YGGCCR	1 cut(s)	138
Eam1104I	CTCTTC	1 cut(s)	538
EarI	CTCTTC	1 cut(s)	538
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	109
Eco130I	CCWWGG	2 cut(s)	440, 452
Eco24I	GRGCYC	2 cut(s)	111, 156
Eco47III	AGCGCT	1 cut(s)	201
Eco53kI	GAGCTC	1 cut(s)	109
Eco72I	CACGTG	1 cut(s)	275
Eco88I	CYCGRG	2 cut(s)	183, 302
EcoICRI	GAGCTC	1 cut(s)	109
EcoT14I	CCWWGG	2 cut(s)	440, 452
EcoT22I	ATGCAT	1 cut(s)	450
EcoT38I	GRGCYC	2 cut(s)	111, 156
ErhI	CCWWGG	2 cut(s)	440, 452
FaeI	CATG	3 cut(s)	43, 456, 527
FatI	CATG	3 cut(s)	39, 452, 523
FblI	GTMKAC	1 cut(s)	69
Fnu4HI	GCNGC	6 cut(s)	60, 63, 189, 203, 402, 467
FokI	GGATG	3 cut(s)	419, 435, 457
FriOI	GRGCYC	2 cut(s)	111, 156
Fsp4HI	GCNGC	6 cut(s)	60, 63, 189, 203, 402, 467
GlaI	GCGC	5 cut(s)	35, 37, 92, 201, 222
GluI	GCNGC	6 cut(s)	60, 63, 189, 203, 402, 467
GsuI	CTGGAG	1 cut(s)	606
HaeII	RGCGCY	1 cut(s)	203
HaeIII	GGCC	3 cut(s)	53, 140, 336
HapII	CCGG	4 cut(s)	137, 184, 212, 224
HgaI	GACGC	5 cut(s)	10, 16, 82, 247, 393
HhaI	GCGC	5 cut(s)	36, 38, 93, 202, 223
Hin1I	GRCGYC	1 cut(s)	239
Hin1II	CATG	3 cut(s)	43, 456, 527
Hin6I	GCGC	5 cut(s)	34, 36, 91, 200, 221
HinP1I	GCGC	5 cut(s)	34, 36, 91, 200, 221
HincII	GTYRAC	1 cut(s)	70
HindII	GTYRAC	1 cut(s)	70
HpaII	CCGG	4 cut(s)	137, 184, 212, 224
Hpy166II	GTNNAC	1 cut(s)	70
Hpy188I	TCNGA	2 cut(s)	247, 496
Hpy188III	TCNNGA	4 cut(s)	171, 311, 480, 623
Hpy8I	GTNNAC	1 cut(s)	70
Hpy99I	CGWCG	6 cut(s)	71, 98, 134, 241, 247, 466
HpyAV	CCTTC	4 cut(s)	43, 302, 399, 624
HpyCH4III	ACNGT	1 cut(s)	374
HpyCH4IV	ACGT	1 cut(s)	274
HpyCH4V	TGCA	4 cut(s)	319, 347, 448, 559
HpyF10VI	GCNNNNNNNGC	5 cut(s)	33, 59, 160, 197, 445
HpyF3I	CTNAG	3 cut(s)	353, 495, 500
HpySE526I	ACGT	1 cut(s)	274
Hsp92I	GRCGYC	1 cut(s)	239
Hsp92II	CATG	3 cut(s)	43, 456, 527
HspAI	GCGC	5 cut(s)	34, 36, 91, 200, 221
KpnI	GGTACC	1 cut(s)	632
Kzo9I	GATC	4 cut(s)	247, 307, 313, 649
LmnI	GCTCC	1 cut(s)	114
Lsp1109I	GCAGC	3 cut(s)	189, 388, 453
LweI	GCATC	3 cut(s)	435, 457, 600
MaeII	ACGT	1 cut(s)	274
MaeIII	GTNAC	2 cut(s)	28, 275
MalI	GATC	4 cut(s)	249, 309, 315, 651
MboI	GATC	4 cut(s)	247, 307, 313, 649
MboII	GAAGA	3 cut(s)	205, 555, 659
MflI	RGATCY	3 cut(s)	247, 307, 649
MhlI	GDGCHC	2 cut(s)	111, 156
MluCI	AATT	3 cut(s)	326, 380, 596
MmeI	TCCRAC	1 cut(s)	225
MnlI	CCTC	9 cut(s)	128, 139, 220, 298, 495, 539, 542, 619, 630
Mph1103I	ATGCAT	1 cut(s)	450
MspI	CCGG	4 cut(s)	137, 184, 212, 224
MspR9I	CCNGG	3 cut(s)	184, 185, 212
MvnI	CGCG	5 cut(s)	27, 34, 36, 93, 221
MwoI	GCNNNNNNNGC	5 cut(s)	33, 59, 160, 197, 445
NciI	CCSGG	3 cut(s)	184, 185, 212
NcoI	CCATGG	1 cut(s)	452
NdeII	GATC	4 cut(s)	247, 307, 313, 649
NlaIII	CATG	3 cut(s)	43, 456, 527
NlaIV	GGNNCC	3 cut(s)	249, 309, 630
NmuCI	GTSAC	2 cut(s)	28, 275
NsiI	ATGCAT	1 cut(s)	450
PaeR7I	CTCGAG	1 cut(s)	302
PauI	GCGCGC	1 cut(s)	34
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PflFI	GACNNNGTC	2 cut(s)	241, 460
PfoI	TCCNGGA	1 cut(s)	210
PkrI	GCNGC	6 cut(s)	61, 64, 190, 204, 403, 468
PmaCI	CACGTG	1 cut(s)	275
PmlI	CACGTG	1 cut(s)	275
Ppu21I	YACGTR	1 cut(s)	275
Psp124BI	GAGCTC	1 cut(s)	111
PspCI	CACGTG	1 cut(s)	275
PspN4I	GGNNCC	3 cut(s)	249, 309, 630
PspPI	GGNCC	1 cut(s)	334
PspXI	VCTCGAGB	1 cut(s)	302
PsuI	RGATCY	3 cut(s)	247, 307, 649
PsyI	GACNNNGTC	2 cut(s)	241, 460
PteI	GCGCGC	1 cut(s)	34
RsaI	GTAC	4 cut(s)	99, 290, 578, 630
RsaNI	GTAC	4 cut(s)	98, 289, 577, 629
SacI	GAGCTC	1 cut(s)	111
SalI	GTCGAC	1 cut(s)	68
SatI	GCNGC	6 cut(s)	60, 63, 189, 203, 402, 467
Sau3AI	GATC	4 cut(s)	247, 307, 313, 649
Sau96I	GGNCC	1 cut(s)	334
ScrFI	CCNGG	3 cut(s)	184, 185, 212
SduI	GDGCHC	2 cut(s)	111, 156
SfaNI	GCATC	3 cut(s)	435, 457, 600
Sfr274I	CTCGAG	1 cut(s)	302
SlaI	CTCGAG	1 cut(s)	302
SmaI	CCCGGG	1 cut(s)	185
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
Sse9I	AATT	3 cut(s)	326, 380, 596
SsiI	CCGC	7 cut(s)	5, 25, 60, 63, 163, 188, 219
SspI	AATATT	1 cut(s)	476
SstI	GAGCTC	1 cut(s)	111
StyD4I	CCNGG	3 cut(s)	182, 183, 210
StyI	CCWWGG	2 cut(s)	440, 452
TaaI	ACNGT	1 cut(s)	374
TaiI	ACGT	1 cut(s)	277
TaqI	TCGA	2 cut(s)	69, 303
TasI	AATT	3 cut(s)	326, 380, 596
TatI	WGTACW	1 cut(s)	576
TauI	GCSGC	3 cut(s)	62, 65, 191
TscAI	CASTG	1 cut(s)	612
TseFI	GTSAC	2 cut(s)	28, 275
TseI	GCWGC	3 cut(s)	202, 401, 466
Tsp45I	GTSAC	2 cut(s)	28, 275
TspDTI	ATGAA	1 cut(s)	56
TspMI	CCCGGG	1 cut(s)	183
TspRI	CASTG	1 cut(s)	612
Tth111I	GACNNNGTC	2 cut(s)	241, 460
XapI	RAATTY	3 cut(s)	326, 380, 596
XhoI	CTCGAG	1 cut(s)	302
XmaI	CCCGGG	1 cut(s)	183
XmiI	GTMKAC	1 cut(s)	69
Zsp2I	ATGCAT	1 cut(s)	450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.