Rh6DG059100

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000541
Physical Location & Seq
Forward (+)
6077359 .. 6080849
3491 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG059100.1

Sequence Viewer

Length: 1155 bp
ATGATTTTGAAAACGGAAAATACCGCCATTCCGTCTATGGCTTTATCCGGATTCCGATCTTCTTCGCAGTTTTCATTTCTTCATTTGGAAACAAAAAAAAAGAAAGAAAAATCCCCAAATCCTCTGCAAATCAATTCAAGCATGTGCGACGAAGGAAACAGCGTCTACACCACGCGCTCGACGAAGAAGCGAGCCTCGGCGGCGGAGGCCCTGAAAGCTCCGGCGTCCAAGAAGCAGCGATCCGTACTGGGAGAGATCACCAACTCGCCGGATCTCGTTTCGGTTCCGAAATCGGCACCGAAGAAACCGAAAATTGAGTCGCAGAAGGAGAAGAAGGAAGGAGAAGAGGAGGGACTCAAGACGGAGATTGGTGTGAGCTCGATTGATCCGGTCAAATGTGCTTACTCGCCTTCTATGTATAAGCATCTTCATAAATTGGAGGTGGAGGGGAAGAACAGACCTTTATGTGGTTACATGGAGAAGGTGCAGAATTGTATTTCAGAAAACATGCGAGAAGTCCTGGTGGATTGGTTGGTGGAGGTTGCGGAGGAATACAAGTTTGTTTCAGACACCCTTTATCTTACCGTATCATATATTGACAGATACCTTTCTTCACATGTTATCAGCAAGAACAAGCTACAGCTTCTTGGTGTTGCGTGCATGTTTATTGCCTCGAAGTACGAAGAGATTTGTCCTCCACGTATTGAAGAGTTCTGCTATATAACAGATAATTCCTACATGATAGAAGAGGTGTTGGAAATGGAGAAAGATGTACTCAAATTCTTGAACTTTGAGATCTATACTCCCACAACAAAGAATTTTCTCAGAGTCTTTGCAAGAGCTGCTCAAGAGAATTCCAAATCTTCGGATCTGCAGTTTGAATTCTTGGGTGGTTATCTTGCGGAACTAAGTTTGCTTGACTACTGCTGTGTTCGATTCCTACCATCAGTTATTGCTGCATCAGCAGTTTTTCTTACAAGGTTCACAATCCAGCCTGAGGTTCATCCCTGGAGCTGGGACTTGCAATGCTATTCTGGTTATAAACCATCTGACTTACAAGATTGTGTCCTTGCCCTTCATGACTTGCAGCTGAATAAAAGAGGAAGCAATTTGCGAGCAGTTAGAGATAAATATATGCAAGCAAAGGTAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

384

Amino Acids

43.66

Weight (kDa)

7.89

Isoelectric Point (pI)

50.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 139 - 266 1.2e-45 Cyclin, N-terminal domain
Cyclin_C PF02984 269 - 384 1.2e-30 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000541)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47210 AT1G47210 AT1G47220 AT1G47230 AT1G47230 AT2G01310 AT5G43080 AT5G43080
fragaria_vesca FvH4_2g04770 FvH4_2g04770 FvH4_2g04770 FvH4_2g33510 FvH4_2g33510 FvH4_2g33510 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33530 FvH4_2g33530
malus_domestica MD05G1092000.v1.1 MD08G1091000.v1.1 MD08G1091200.v1.1 MD10G1100200.v1.1 MD10G1100700.v1.1 MD12G1105600.v1.1 MD15G1075100.v1.1 MD15G1075200.v1.1
prunus_persica Prupe.1G428000_v2.0.a1 Prupe.1G428100_v2.0.a1 Prupe.4G285800_v2.0.a1 Prupe.8G137700_v2.0.a1 Prupe.8G137700_v2.0.a1
pyrus_communis pycom05g09170 pycom08g07360 pycom08g07370 pycom15g07000 pycom15g07020
rosa_chinensis RchiOBHm_Chr3g0465621 RchiOBHm_Chr6g0254421 RchiOBHm_Chr6g0254451 RchiOBHm_Chr6g0308961 RchiOBHm_Chr6g0308971 RchiOBHm_Chr6g0308991 RchiOBHm_Chr7g0190851
rosa_laevigata RLG00000003915 RLG00000010598 RLG00000010599 RLG00000010600 RLG00000014913
rosa_multiflora Rmu_sc0009578.1_g000002 Rmu_sc0009578.1_g000003 Rmu_sc0029942.1_g000001 Rmu_sc0036151.1_g000001 Rmu_sc0036151.1_g000002 Rmu_sc0037719.1_g000001 Rmu_sc0042877.1_g000001 Rmu_ssc0000481.1_g000003
rosa_roxburghii Rroxscaffold_7G00159740 Rroxscaffold_7G00159750 Rroxscaffold_7G00159760 Rroxscaffold_7G00159770 Rroxscaffold_7G00210810
rosa_rugosa Rorug05G0552200 Rorug05G0552300 Rorug05G0552400
rosa_samantha Rh3CG081000 Rh6AG069300 Rh6AG481300 Rh6AG481600 Rh6BG062000 Rh6BG490400 Rh6BG490500 Rh6BG490600 Rh6CG062100 Rh6CG495700 Rh6CG495900 Rh6DG059100 Rh6DG481600 Rh6DG481700 Rh6DG481800
rosa_wichuraiana Rw6G006090 Rw6G041930 Rw6G041940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1041
AccB1I GGYRCC 1 cut(s) 295
AccI GTMKAC 1 cut(s) 165
AccII CGCG 1 cut(s) 175
AccIII TCCGGA 1 cut(s) 47
AciI CCGC 5 cut(s) 24, 200, 203, 545, 902
AclWI GGATC 4 cut(s) 234, 279, 380, 876
AcsI RAATTY 4 cut(s) 779, 817, 853, 881
AcyI GRCGYC 1 cut(s) 224
AfaI GTAC 3 cut(s) 246, 680, 774
AfiI CCNNNNNNNGG 3 cut(s) 467, 997, 1014
AflIII ACRYGT 1 cut(s) 616
AgsI TTSAA 5 cut(s) 10, 138, 707, 787, 881
AjnI CCWGG 2 cut(s) 519, 1007
AluBI AGCT 7 cut(s) 218, 378, 637, 643, 842, 1014, 1090
AluI AGCT 7 cut(s) 218, 378, 637, 643, 842, 1014, 1090
Alw21I GWGCWC 1 cut(s) 380
AlwI GGATC 4 cut(s) 234, 279, 380, 876
Aor13HI TCCGGA 1 cut(s) 47
AoxI GGCC 1 cut(s) 207
ApeKI GCWGC 4 cut(s) 235, 842, 956, 1087
ApoI RAATTY 4 cut(s) 779, 817, 853, 881
ArsI GACNNNNNNTTYG 2 cut(s) 302, 334
AspLEI GCGC 1 cut(s) 177
AspS9I GGNCC 1 cut(s) 208
AsuHPI GGTGA 1 cut(s) 250
AxyI CCTNAGG 1 cut(s) 996
BanI GGYRCC 1 cut(s) 295
BanII GRGCYC 1 cut(s) 380
Bbv12I GWGCWC 1 cut(s) 380
BbvI GCAGC 4 cut(s) 247, 829, 943, 1099
BccI CCATC 2 cut(s) 952, 1054
BciT130I CCWGG 2 cut(s) 521, 1009
BfmI CTRYAG 2 cut(s) 638, 872
BglI GCCNNNNNGGC 1 cut(s) 200
BglII AGATCT 1 cut(s) 795
BisI GCNGC 5 cut(s) 201, 236, 843, 957, 1088
BlsI GCNGC 5 cut(s) 202, 237, 844, 958, 1089
Bme1390I CCNGG 2 cut(s) 521, 1009
BmgT120I GGNCC 1 cut(s) 208
BmiI GGNNCC 2 cut(s) 285, 297
BmrFI CCNGG 2 cut(s) 521, 1009
BmrI ACTGGG 1 cut(s) 257
BmsI GCATC 2 cut(s) 433, 968
BmuI ACTGGG 1 cut(s) 257
BpmI CTGGAG 1 cut(s) 1030
BpuEI CTTGAG 2 cut(s) 341, 831
BsaAI YACGTR 1 cut(s) 701
BsaBI GATNNNNATC 1 cut(s) 55
BsaHI GRCGYC 1 cut(s) 224
BsaJI CCNNGG 2 cut(s) 195, 1007
BsaWI WCCGGW 2 cut(s) 47, 388
Bsc4I CCNNNNNNNGG 3 cut(s) 467, 997, 1014
Bse1I ACTGG 1 cut(s) 252
Bse21I CCTNAGG 1 cut(s) 996
Bse3DI GCAATG 1 cut(s) 1031
Bse8I GATNNNNATC 1 cut(s) 55
BseAI TCCGGA 1 cut(s) 47
BseBI CCWGG 2 cut(s) 521, 1009
BseDI CCNNGG 2 cut(s) 195, 1007
BseGI GGATG 1 cut(s) 1003
BseJI GATNNNNATC 1 cut(s) 55
BseLI CCNNNNNNNGG 3 cut(s) 467, 997, 1014
BseMI GCAATG 1 cut(s) 1031
BseMII CTCAG 2 cut(s) 838, 987
BseNI ACTGG 1 cut(s) 252
BseRI GAGGAG 1 cut(s) 362
BseXI GCAGC 4 cut(s) 247, 829, 943, 1099
BseYI CCCAGC 1 cut(s) 1014
BsgI GTGCAG 1 cut(s) 506
Bsh1236I CGCG 1 cut(s) 175
BshFI GGCC 1 cut(s) 209
BshNI GGYRCC 1 cut(s) 295
BsiHKAI GWGCWC 1 cut(s) 380
BsiSI CCGG 4 cut(s) 48, 221, 269, 389
BslFI GGGAC 2 cut(s) 366, 1031
BslI CCNNNNNNNGG 3 cut(s) 467, 997, 1014
BsmFI GGGAC 2 cut(s) 366, 1031
BsnI GGCC 1 cut(s) 209
Bsp1286I GDGCHC 1 cut(s) 380
Bsp13I TCCGGA 1 cut(s) 47
Bsp143I GATC 7 cut(s) 56, 239, 255, 271, 385, 795, 868
BspACI CCGC 5 cut(s) 24, 200, 203, 545, 902
BspANI GGCC 1 cut(s) 209
BspCNI CTCAG 2 cut(s) 837, 988
BspEI TCCGGA 1 cut(s) 47
BspFNI CGCG 1 cut(s) 175
BspHI TCATGA 1 cut(s) 1078
BspLI GGNNCC 2 cut(s) 285, 297
BspMAI CTGCAG 1 cut(s) 876
BspPI GGATC 4 cut(s) 234, 279, 380, 876
BspT107I GGYRCC 1 cut(s) 295
BsrDI GCAATG 1 cut(s) 1031
BsrI ACTGG 1 cut(s) 252
BssECI CCNNGG 2 cut(s) 195, 1007
BssMI GATC 7 cut(s) 56, 239, 255, 271, 385, 795, 868
BssNI GRCGYC 1 cut(s) 224
Bst2UI CCWGG 2 cut(s) 521, 1009
Bst4CI ACNGT 1 cut(s) 586
Bst6I CTCTTC 4 cut(s) 339, 678, 702, 741
BstACI GRCGYC 1 cut(s) 224
BstAPI GCANNNNNTGC 1 cut(s) 842
BstBAI YACGTR 1 cut(s) 701
BstC8I GCNNGC 4 cut(s) 192, 658, 1116, 1140
BstDEI CTNAG 3 cut(s) 824, 908, 996
BstF5I GGATG 1 cut(s) 1003
BstFNI CGCG 1 cut(s) 175
BstHHI GCGC 1 cut(s) 177
BstKTI GATC 7 cut(s) 59, 242, 258, 274, 388, 798, 871
BstMBI GATC 7 cut(s) 56, 239, 255, 271, 385, 795, 868
BstMWI GCNNNNNNNGC 5 cut(s) 200, 206, 215, 842, 962
BstNI CCWGG 2 cut(s) 521, 1009
BstNSI RCATGY 4 cut(s) 145, 511, 620, 664
BstSCI CCNGG 2 cut(s) 519, 1007
BstSFI CTRYAG 2 cut(s) 638, 872
BstUI CGCG 1 cut(s) 175
BstV1I GCAGC 4 cut(s) 247, 829, 943, 1099
BstX2I RGATCY 3 cut(s) 271, 795, 868
BstYI RGATCY 3 cut(s) 271, 795, 868
Bsu36I CCTNAGG 1 cut(s) 996
BsuRI GGCC 1 cut(s) 209
BtsCI GGATG 1 cut(s) 1003
Cac8I GCNNGC 4 cut(s) 192, 658, 1116, 1140
CciI TCATGA 1 cut(s) 1078
CfoI GCGC 1 cut(s) 177
Cfr13I GGNCC 1 cut(s) 208
CseI GACGC 2 cut(s) 151, 213
Csp6I GTAC 3 cut(s) 245, 679, 773
CviAII CATG 7 cut(s) 142, 475, 508, 617, 661, 739, 1079
CviQI GTAC 3 cut(s) 245, 679, 773
DdeI CTNAG 3 cut(s) 824, 908, 996
DpnI GATC 7 cut(s) 58, 241, 257, 273, 387, 797, 870
DpnII GATC 7 cut(s) 56, 239, 255, 271, 385, 795, 868
Eam1104I CTCTTC 4 cut(s) 339, 678, 702, 741
EarI CTCTTC 4 cut(s) 339, 678, 702, 741
EciI GGCGGA 1 cut(s) 218
Ecl136II GAGCTC 1 cut(s) 378
Eco24I GRGCYC 1 cut(s) 380
Eco53kI GAGCTC 1 cut(s) 378
Eco81I CCTNAGG 1 cut(s) 996
EcoICRI GAGCTC 1 cut(s) 378
EcoO109I RGGNCCY 1 cut(s) 208
EcoRI GAATTC 2 cut(s) 853, 881
EcoRII CCWGG 2 cut(s) 519, 1007
EcoT38I GRGCYC 1 cut(s) 380
FaeI CATG 7 cut(s) 145, 478, 511, 620, 664, 742, 1082
FaqI GGGAC 2 cut(s) 366, 1031
FatI CATG 7 cut(s) 141, 474, 507, 616, 660, 738, 1078
FblI GTMKAC 1 cut(s) 165
Fnu4HI GCNGC 5 cut(s) 201, 236, 843, 957, 1088
FokI GGATG 1 cut(s) 990
FriOI GRGCYC 1 cut(s) 380
Fsp4HI GCNGC 5 cut(s) 201, 236, 843, 957, 1088
GlaI GCGC 1 cut(s) 176
GluI GCNGC 5 cut(s) 201, 236, 843, 957, 1088
GsaI CCCAGC 1 cut(s) 1018
GsuI CTGGAG 1 cut(s) 1030
HaeIII GGCC 1 cut(s) 209
HapII CCGG 4 cut(s) 48, 221, 269, 389
HgaI GACGC 2 cut(s) 151, 213
HhaI GCGC 1 cut(s) 177
Hin1I GRCGYC 1 cut(s) 224
Hin1II CATG 7 cut(s) 145, 478, 511, 620, 664, 742, 1082
Hin6I GCGC 1 cut(s) 175
HinP1I GCGC 1 cut(s) 175
HinfI GANTC 5 cut(s) 51, 317, 354, 828, 936
HpaII CCGG 4 cut(s) 48, 221, 269, 389
HphI GGTGA 1 cut(s) 250
Hpy166II GTNNAC 2 cut(s) 166, 984
Hpy188I TCNGA 7 cut(s) 56, 288, 502, 568, 827, 868, 1051
Hpy188III TCNNGA 5 cut(s) 48, 358, 784, 848, 1079
Hpy8I GTNNAC 2 cut(s) 166, 984
Hpy99I CGWCG 2 cut(s) 152, 184
HpyAV CCTTC 7 cut(s) 146, 319, 328, 332, 420, 475, 1085
HpyCH4III ACNGT 1 cut(s) 586
HpyCH4IV ACGT 1 cut(s) 700
HpyCH4V TGCA 9 cut(s) 127, 487, 660, 836, 874, 959, 1024, 1087, 1138
HpyF10VI GCNNNNNNNGC 5 cut(s) 200, 206, 215, 842, 962
HpyF3I CTNAG 3 cut(s) 824, 908, 996
HpySE526I ACGT 1 cut(s) 700
Hsp92I GRCGYC 1 cut(s) 224
Hsp92II CATG 7 cut(s) 145, 478, 511, 620, 664, 742, 1082
HspAI GCGC 1 cut(s) 175
Kpn2I TCCGGA 1 cut(s) 47
Kzo9I GATC 7 cut(s) 56, 239, 255, 271, 385, 795, 868
LmnI GCTCC 2 cut(s) 223, 1011
Lsp1109I GCAGC 4 cut(s) 247, 829, 943, 1099
LweI GCATC 2 cut(s) 433, 968
MaeII ACGT 1 cut(s) 700
MaeIII GTNAC 1 cut(s) 470
MalI GATC 7 cut(s) 58, 241, 257, 273, 387, 797, 870
MboI GATC 7 cut(s) 56, 239, 255, 271, 385, 795, 868
MflI RGATCY 3 cut(s) 271, 795, 868
MhlI GDGCHC 1 cut(s) 380
MlyI GAGTC 3 cut(s) 326, 348, 837
MmeI TCCRAC 1 cut(s) 735
MroI TCCGGA 1 cut(s) 47
MspA1I CMGCKG 1 cut(s) 1090
MspI CCGG 4 cut(s) 48, 221, 269, 389
MspR9I CCNGG 2 cut(s) 521, 1009
MvaI CCWGG 2 cut(s) 521, 1009
MvnI CGCG 1 cut(s) 175
MwoI GCNNNNNNNGC 5 cut(s) 200, 206, 215, 842, 962
NdeII GATC 7 cut(s) 56, 239, 255, 271, 385, 795, 868
NlaIII CATG 7 cut(s) 145, 478, 511, 620, 664, 742, 1082
NlaIV GGNNCC 2 cut(s) 285, 297
NmeAIII GCCGAG 1 cut(s) 176
NspI RCATGY 4 cut(s) 145, 511, 620, 664
PagI TCATGA 1 cut(s) 1078
PciI ACATGT 1 cut(s) 616
PcsI WCGNNNNNNNCGW 1 cut(s) 179
PfeI GAWTC 2 cut(s) 51, 936
PkrI GCNGC 5 cut(s) 202, 237, 844, 958, 1089
PleI GAGTC 3 cut(s) 325, 348, 836
PpsI GAGTC 3 cut(s) 325, 348, 836
Ppu21I YACGTR 1 cut(s) 701
PscI ACATGT 1 cut(s) 616
PsiI TTATAA 1 cut(s) 1041
Psp124BI GAGCTC 1 cut(s) 380
Psp6I CCWGG 2 cut(s) 519, 1007
PspFI CCCAGC 1 cut(s) 1014
PspGI CCWGG 2 cut(s) 519, 1007
PspN4I GGNNCC 2 cut(s) 285, 297
PspPI GGNCC 1 cut(s) 208
PstI CTGCAG 1 cut(s) 876
PsuI RGATCY 3 cut(s) 271, 795, 868
PvuII CAGCTG 1 cut(s) 1090
RsaI GTAC 3 cut(s) 246, 680, 774
RsaNI GTAC 3 cut(s) 245, 679, 773
SacI GAGCTC 1 cut(s) 380
SatI GCNGC 5 cut(s) 201, 236, 843, 957, 1088
Sau3AI GATC 7 cut(s) 56, 239, 255, 271, 385, 795, 868
Sau96I GGNCC 1 cut(s) 208
SchI GAGTC 3 cut(s) 326, 348, 837
ScrFI CCNGG 2 cut(s) 521, 1009
SduI GDGCHC 1 cut(s) 380
SfaNI GCATC 2 cut(s) 433, 968
SfcI CTRYAG 2 cut(s) 638, 872
SmlI CTYRAG 2 cut(s) 356, 846
SmoI CTYRAG 2 cut(s) 356, 846
SsiI CCGC 5 cut(s) 24, 200, 203, 545, 902
SstI GAGCTC 1 cut(s) 380
StyD4I CCNGG 2 cut(s) 519, 1007
TaaI ACNGT 1 cut(s) 586
TaiI ACGT 1 cut(s) 703
TaqI TCGA 4 cut(s) 179, 380, 674, 934
TatI WGTACW 1 cut(s) 772
TauI GCSGC 1 cut(s) 203
TfiI GAWTC 2 cut(s) 51, 936
TseI GCWGC 4 cut(s) 235, 842, 956, 1087
TspDTI ATGAA 5 cut(s) 63, 71, 419, 992, 1067
TspGWI ACGGA 4 cut(s) 21, 29, 232, 377
XapI RAATTY 4 cut(s) 779, 817, 853, 881
XceI RCATGY 4 cut(s) 145, 511, 620, 664
XcmI CCANNNNNNNNNTGG 1 cut(s) 34
XmiI GTMKAC 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.