Rh6BG490400

Belongs to the cyclin family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Reverse (-)
69402359 .. 69404728
2370 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG490400.1

Sequence Viewer

Length: 1026 bp
ATGGCGGAGAAAGAGAACTGCGTCCGCGTCACGCGCGCCATGAAAAGGAAGGCCGAAGCCGCCGCCGTCGACCAAACGCCCCCCAAGAAGCGCGTCGTACTGGGCGAGCTCCCCAACCTCCAAAACGCCGTCGTTCCGGCCAATGAGGTTGAGCCCCACAAGCGGAAATCCAGAACTAAATCCCGGGCGGCGAAGAAAGCGCTGCCTATCCCGGAAACCGCGCCGGAGGTTGAAACGACGCCGTCGGATCCCCAAATGTGCGAGCCTTATTCACGTGACATATACGAGTATCTTCACAAGCTCGAGGTGGATCCAAATAGAAGACCTTTGCCTGATTACTTGGCAAAGGTTCAGAAGGATATCACTGCTAATATGAGAGGAGTCTTGGTGGACTGGTTGGTGGAAGTTGCTGAGGAATACAAGCTCCTTTCCGATACTCTCTACCTCACCGTTTCCTATGTTGATAGGTTCCTTTCTTTCAATGCTCTCAATCGGAAAATGCTTCAGTTACTCGGTGTTTCTTCAATGCTGGTTGCCTCGAAGTATGAAGAGATCACACCTCCACATGTGGAAGAATTGTGTTACATAACAGATAATACATACACCAAGGAAGAGGTGTGCAAAATGGAGGCTGATATACTTAAGGCTTTGAAGTTTGAATTGGGGAATCCTACTATAAAGACAATCTTAAGGAGATTCAATAGAGTTGCTGAAGAGGGCAACAAAGATCCTGATCTGCATTTTGAATTTCTGGGCTACTACCTTGCAGAGCTAAGTTTGTTAGACTACAACTGTGTCAAATTTTTGCCTTCTTTGGTGGCTGCGTCTGTTGTATTTCTTACAAGATTTATCATCCAGCCAAGGATGCATCCATGGACTTCGTCGCTGCTACAATATTCAGGATACAAACCATCTGAGTTGAGGGAATGTGTCCTTATCATACATGACTTGTATCTGGGTAGAAGAGGAGGGTCATTGCAAGCTATAAGAGAGAAGTACAAAAGACATAAGGTATTTACTATTTAG

Protein Analysis

341

Amino Acids

39.23

Weight (kDa)

8.69

Isoelectric Point (pI)

43.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 93 - 221 5e-46 Cyclin, N-terminal domain
Cyclin_C PF02984 224 - 339 5.9e-30 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000541)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47210 AT1G47210 AT1G47220 AT1G47230 AT1G47230 AT2G01310 AT5G43080 AT5G43080
fragaria_vesca FvH4_2g04770 FvH4_2g04770 FvH4_2g04770 FvH4_2g33510 FvH4_2g33510 FvH4_2g33510 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33530 FvH4_2g33530
malus_domestica MD05G1092000.v1.1 MD08G1091000.v1.1 MD08G1091200.v1.1 MD10G1100200.v1.1 MD10G1100700.v1.1 MD12G1105600.v1.1 MD15G1075100.v1.1 MD15G1075200.v1.1
prunus_persica Prupe.1G428000_v2.0.a1 Prupe.1G428100_v2.0.a1 Prupe.4G285800_v2.0.a1 Prupe.8G137700_v2.0.a1 Prupe.8G137700_v2.0.a1
pyrus_communis pycom05g09170 pycom08g07360 pycom08g07370 pycom15g07000 pycom15g07020
rosa_chinensis RchiOBHm_Chr3g0465621 RchiOBHm_Chr6g0254421 RchiOBHm_Chr6g0254451 RchiOBHm_Chr6g0308961 RchiOBHm_Chr6g0308971 RchiOBHm_Chr6g0308991 RchiOBHm_Chr7g0190851
rosa_laevigata RLG00000003915 RLG00000010598 RLG00000010599 RLG00000010600 RLG00000014913
rosa_multiflora Rmu_sc0009578.1_g000002 Rmu_sc0009578.1_g000003 Rmu_sc0029942.1_g000001 Rmu_sc0036151.1_g000001 Rmu_sc0036151.1_g000002 Rmu_sc0037719.1_g000001 Rmu_sc0042877.1_g000001 Rmu_ssc0000481.1_g000003
rosa_roxburghii Rroxscaffold_7G00159740 Rroxscaffold_7G00159750 Rroxscaffold_7G00159760 Rroxscaffold_7G00159770 Rroxscaffold_7G00210810
rosa_rugosa Rorug05G0552200 Rorug05G0552300 Rorug05G0552400
rosa_samantha Rh3CG081000 Rh6AG069300 Rh6AG481300 Rh6AG481600 Rh6BG062000 Rh6BG490400 Rh6BG490500 Rh6BG490600 Rh6CG062100 Rh6CG495700 Rh6CG495900 Rh6DG059100 Rh6DG481600 Rh6DG481700 Rh6DG481800
rosa_wichuraiana Rw6G006090 Rw6G041930 Rw6G041940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 69
AccII CGCG 5 cut(s) 27, 34, 36, 93, 221
AciI CCGC 7 cut(s) 5, 25, 60, 63, 163, 188, 219
AclWI GGATC 5 cut(s) 242, 255, 305, 318, 722
AcoI YGGCCR 1 cut(s) 138
AcsI RAATTY 2 cut(s) 746, 800
AcuI CTGAAG 2 cut(s) 488, 732
AcvI CACGTG 1 cut(s) 275
AcyI GRCGYC 1 cut(s) 239
AfaI GTAC 2 cut(s) 99, 998
AfeI AGCGCT 1 cut(s) 201
AfiI CCNNNNNNNGG 2 cut(s) 45, 162
AflII CTTAAG 2 cut(s) 641, 688
AflIII ACRYGT 1 cut(s) 565
AgsI TTSAA 7 cut(s) 233, 481, 525, 652, 659, 700, 746
AjuI GAANNNNNNNTTGG 2 cut(s) 644, 676
AluBI AGCT 5 cut(s) 109, 301, 424, 772, 983
AluI AGCT 5 cut(s) 109, 301, 424, 772, 983
Alw21I GWGCWC 1 cut(s) 111
AlwI GGATC 5 cut(s) 242, 255, 305, 318, 722
Ama87I CYCGRG 2 cut(s) 183, 302
Aor51HI AGCGCT 1 cut(s) 201
AoxI GGCC 2 cut(s) 51, 138
ApeKI GCWGC 3 cut(s) 202, 821, 886
ApoI RAATTY 2 cut(s) 746, 800
AspLEI GCGC 5 cut(s) 36, 38, 93, 202, 223
AsuC2I CCSGG 3 cut(s) 184, 185, 212
AsuHPI GGTGA 1 cut(s) 439
AvaI CYCGRG 2 cut(s) 183, 302
BamHI GGATCC 2 cut(s) 247, 310
BanII GRGCYC 2 cut(s) 111, 156
BbrPI CACGTG 1 cut(s) 275
BbsI GAAGAC 1 cut(s) 328
Bbv12I GWGCWC 1 cut(s) 111
BbvCI CCTCAGC 1 cut(s) 411
BbvI GCAGC 3 cut(s) 189, 808, 873
BccI CCATC 1 cut(s) 919
BceAI ACGGC 3 cut(s) 50, 113, 226
BciVI GTATCC 1 cut(s) 896
BcnI CCSGG 3 cut(s) 184, 185, 212
BfoI RGCGCY 1 cut(s) 203
BfrI CTTAAG 2 cut(s) 641, 688
BfuI GTATCC 1 cut(s) 896
BisI GCNGC 6 cut(s) 60, 63, 189, 203, 822, 887
BlsI GCNGC 6 cut(s) 61, 64, 190, 204, 823, 888
Bme1390I CCNGG 3 cut(s) 184, 185, 212
BmeT110I CYCGRG 2 cut(s) 183, 302
BmiI GGNNCC 3 cut(s) 249, 312, 470
BmrFI CCNGG 3 cut(s) 184, 185, 212
BmrI ACTGGG 1 cut(s) 110
BmsI GCATC 2 cut(s) 855, 877
BmuI ACTGGG 1 cut(s) 110
BpiI GAAGAC 1 cut(s) 328
Bpu10I CCTNAGC 1 cut(s) 411
BpuMI CCSGG 3 cut(s) 184, 185, 212
BsaAI YACGTR 1 cut(s) 275
BsaBI GATNNNNATC 1 cut(s) 732
BsaHI GRCGYC 1 cut(s) 239
BsaJI CCNNGG 4 cut(s) 183, 606, 860, 872
BsaXI ACNNNNNCTCC 2 cut(s) 372, 402
Bsc4I CCNNNNNNNGG 2 cut(s) 45, 162
Bse1I ACTGG 2 cut(s) 105, 398
Bse3DI GCAATG 1 cut(s) 974
Bse8I GATNNNNATC 1 cut(s) 732
BseDI CCNNGG 4 cut(s) 183, 606, 860, 872
BseGI GGATG 3 cut(s) 852, 868, 870
BseJI GATNNNNATC 1 cut(s) 732
BseLI CCNNNNNNNGG 2 cut(s) 45, 162
BseMI GCAATG 1 cut(s) 974
BseMII CTCAG 2 cut(s) 402, 906
BseNI ACTGG 2 cut(s) 105, 398
BsePI GCGCGC 1 cut(s) 34
BseRI GAGGAG 2 cut(s) 393, 981
BseXI GCAGC 3 cut(s) 189, 808, 873
Bsh1236I CGCG 5 cut(s) 27, 34, 36, 93, 221
BshFI GGCC 2 cut(s) 53, 140
BsiHKAI GWGCWC 1 cut(s) 111
BsiHKCI CYCGRG 2 cut(s) 183, 302
BsiSI CCGG 4 cut(s) 137, 184, 212, 224
BslI CCNNNNNNNGG 2 cut(s) 45, 162
BsnI GGCC 2 cut(s) 53, 140
BsoBI CYCGRG 2 cut(s) 183, 302
Bsp1286I GDGCHC 2 cut(s) 111, 156
Bsp143I GATC 5 cut(s) 247, 310, 552, 727, 733
Bsp19I CCATGG 1 cut(s) 872
BspACI CCGC 7 cut(s) 5, 25, 60, 63, 163, 188, 219
BspANI GGCC 2 cut(s) 53, 140
BspCNI CTCAG 2 cut(s) 403, 907
BspFNI CGCG 5 cut(s) 27, 34, 36, 93, 221
BspLI GGNNCC 3 cut(s) 249, 312, 470
BspPI GGATC 5 cut(s) 242, 255, 305, 318, 722
BspTI CTTAAG 2 cut(s) 641, 688
BsrDI GCAATG 1 cut(s) 974
BsrI ACTGG 2 cut(s) 105, 398
BssECI CCNNGG 4 cut(s) 183, 606, 860, 872
BssHII GCGCGC 1 cut(s) 34
BssMI GATC 5 cut(s) 247, 310, 552, 727, 733
BssNI GRCGYC 1 cut(s) 239
BssT1I CCWWGG 3 cut(s) 606, 860, 872
Bst4CI ACNGT 2 cut(s) 451, 794
Bst6I CTCTTC 4 cut(s) 543, 606, 708, 958
BstACI GRCGYC 1 cut(s) 239
BstAFI CTTAAG 2 cut(s) 641, 688
BstBAI YACGTR 1 cut(s) 275
BstC8I GCNNGC 4 cut(s) 36, 107, 263, 981
BstDEI CTNAG 3 cut(s) 411, 773, 915
BstDSI CCRYGG 1 cut(s) 872
BstF5I GGATG 3 cut(s) 852, 868, 870
BstFNI CGCG 5 cut(s) 27, 34, 36, 93, 221
BstH2I RGCGCY 1 cut(s) 203
BstHHI GCGC 5 cut(s) 36, 38, 93, 202, 223
BstKTI GATC 5 cut(s) 250, 313, 555, 730, 736
BstMBI GATC 5 cut(s) 247, 310, 552, 727, 733
BstMWI GCNNNNNNNGC 5 cut(s) 33, 59, 160, 197, 865
BstNSI RCATGY 1 cut(s) 569
BstSCI CCNGG 3 cut(s) 182, 183, 210
BstUI CGCG 5 cut(s) 27, 34, 36, 93, 221
BstV1I GCAGC 3 cut(s) 189, 808, 873
BstV2I GAAGAC 1 cut(s) 328
BstX2I RGATCY 3 cut(s) 247, 310, 727
BstYI RGATCY 3 cut(s) 247, 310, 727
BsuI GTATCC 1 cut(s) 896
BsuRI GGCC 2 cut(s) 53, 140
BtgI CCRYGG 1 cut(s) 872
BtsCI GGATG 3 cut(s) 852, 868, 870
BtsI GCAGTG 1 cut(s) 363
BtsIMutI CAGTG 1 cut(s) 363
Cac8I GCNNGC 4 cut(s) 36, 107, 263, 981
CfoI GCGC 5 cut(s) 36, 38, 93, 202, 223
Cfr9I CCCGGG 1 cut(s) 183
CseI GACGC 5 cut(s) 10, 16, 82, 247, 813
Csp6I GTAC 2 cut(s) 98, 997
CviAII CATG 4 cut(s) 40, 566, 873, 944
CviQI GTAC 2 cut(s) 98, 997
DdeI CTNAG 3 cut(s) 411, 773, 915
DpnI GATC 5 cut(s) 249, 312, 554, 729, 735
DpnII GATC 5 cut(s) 247, 310, 552, 727, 733
EaeI YGGCCR 1 cut(s) 138
Eam1104I CTCTTC 4 cut(s) 543, 606, 708, 958
EarI CTCTTC 4 cut(s) 543, 606, 708, 958
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 109
Eco130I CCWWGG 3 cut(s) 606, 860, 872
Eco24I GRGCYC 2 cut(s) 111, 156
Eco32I GATATC 1 cut(s) 361
Eco47III AGCGCT 1 cut(s) 201
Eco53kI GAGCTC 1 cut(s) 109
Eco57I CTGAAG 2 cut(s) 488, 732
Eco72I CACGTG 1 cut(s) 275
Eco88I CYCGRG 2 cut(s) 183, 302
EcoICRI GAGCTC 1 cut(s) 109
EcoRV GATATC 1 cut(s) 361
EcoT14I CCWWGG 3 cut(s) 606, 860, 872
EcoT22I ATGCAT 1 cut(s) 870
EcoT38I GRGCYC 2 cut(s) 111, 156
ErhI CCWWGG 3 cut(s) 606, 860, 872
FaeI CATG 4 cut(s) 43, 569, 876, 947
FalI AAGNNNNNCTT 2 cut(s) 671, 703
FatI CATG 4 cut(s) 39, 565, 872, 943
FblI GTMKAC 1 cut(s) 69
Fnu4HI GCNGC 6 cut(s) 60, 63, 189, 203, 822, 887
FokI GGATG 3 cut(s) 839, 855, 877
FriOI GRGCYC 2 cut(s) 111, 156
Fsp4HI GCNGC 6 cut(s) 60, 63, 189, 203, 822, 887
GlaI GCGC 5 cut(s) 35, 37, 92, 201, 222
GluI GCNGC 6 cut(s) 60, 63, 189, 203, 822, 887
HaeII RGCGCY 1 cut(s) 203
HaeIII GGCC 2 cut(s) 53, 140
HapII CCGG 4 cut(s) 137, 184, 212, 224
HgaI GACGC 5 cut(s) 10, 16, 82, 247, 813
HhaI GCGC 5 cut(s) 36, 38, 93, 202, 223
Hin1I GRCGYC 1 cut(s) 239
Hin1II CATG 4 cut(s) 43, 569, 876, 947
Hin6I GCGC 5 cut(s) 34, 36, 91, 200, 221
HinP1I GCGC 5 cut(s) 34, 36, 91, 200, 221
HincII GTYRAC 1 cut(s) 70
HindII GTYRAC 1 cut(s) 70
HinfI GANTC 3 cut(s) 381, 667, 696
HpaII CCGG 4 cut(s) 137, 184, 212, 224
HphI GGTGA 1 cut(s) 439
Hpy166II GTNNAC 2 cut(s) 70, 391
Hpy188I TCNGA 5 cut(s) 247, 354, 433, 495, 916
Hpy188III TCNNGA 3 cut(s) 171, 731, 900
Hpy8I GTNNAC 2 cut(s) 70, 391
Hpy99I CGWCG 6 cut(s) 71, 98, 134, 241, 247, 886
HpyAV CCTTC 3 cut(s) 43, 349, 819
HpyCH4III ACNGT 2 cut(s) 451, 794
HpyCH4IV ACGT 1 cut(s) 274
HpyCH4V TGCA 5 cut(s) 621, 739, 767, 868, 979
HpyF10VI GCNNNNNNNGC 5 cut(s) 33, 59, 160, 197, 865
HpyF3I CTNAG 3 cut(s) 411, 773, 915
HpySE526I ACGT 1 cut(s) 274
Hsp92I GRCGYC 1 cut(s) 239
Hsp92II CATG 4 cut(s) 43, 569, 876, 947
HspAI GCGC 5 cut(s) 34, 36, 91, 200, 221
Kzo9I GATC 5 cut(s) 247, 310, 552, 727, 733
LmnI GCTCC 2 cut(s) 114, 429
Lsp1109I GCAGC 3 cut(s) 189, 808, 873
LweI GCATC 2 cut(s) 855, 877
MaeII ACGT 1 cut(s) 274
MaeIII GTNAC 4 cut(s) 28, 275, 507, 581
MalI GATC 5 cut(s) 249, 312, 554, 729, 735
MboI GATC 5 cut(s) 247, 310, 552, 727, 733
MboII GAAGA 9 cut(s) 205, 284, 333, 513, 560, 584, 623, 725, 975
MflI RGATCY 3 cut(s) 247, 310, 727
MhlI GDGCHC 2 cut(s) 111, 156
MluCI AATT 4 cut(s) 575, 659, 746, 800
MlyI GAGTC 1 cut(s) 390
MmeI TCCRAC 1 cut(s) 225
Mph1103I ATGCAT 1 cut(s) 870
MseI TTAA 2 cut(s) 642, 689
MspCI CTTAAG 2 cut(s) 641, 688
MspI CCGG 4 cut(s) 137, 184, 212, 224
MspR9I CCNGG 3 cut(s) 184, 185, 212
MvnI CGCG 5 cut(s) 27, 34, 36, 93, 221
MwoI GCNNNNNNNGC 5 cut(s) 33, 59, 160, 197, 865
NciI CCSGG 3 cut(s) 184, 185, 212
NcoI CCATGG 1 cut(s) 872
NdeII GATC 5 cut(s) 247, 310, 552, 727, 733
NlaIII CATG 4 cut(s) 43, 569, 876, 947
NlaIV GGNNCC 3 cut(s) 249, 312, 470
NmuCI GTSAC 2 cut(s) 28, 275
NsiI ATGCAT 1 cut(s) 870
NspI RCATGY 1 cut(s) 569
PaeR7I CTCGAG 1 cut(s) 302
PauI GCGCGC 1 cut(s) 34
PciI ACATGT 1 cut(s) 565
PcsI WCGNNNNNNNCGW 1 cut(s) 102
PfeI GAWTC 2 cut(s) 667, 696
PflFI GACNNNGTC 2 cut(s) 241, 880
PfoI TCCNGGA 1 cut(s) 210
PkrI GCNGC 6 cut(s) 61, 64, 190, 204, 823, 888
PleI GAGTC 1 cut(s) 389
PmaCI CACGTG 1 cut(s) 275
PmlI CACGTG 1 cut(s) 275
PpsI GAGTC 1 cut(s) 389
Ppu21I YACGTR 1 cut(s) 275
PscI ACATGT 1 cut(s) 565
Psp124BI GAGCTC 1 cut(s) 111
PspCI CACGTG 1 cut(s) 275
PspN4I GGNNCC 3 cut(s) 249, 312, 470
PspXI VCTCGAGB 1 cut(s) 302
PsuI RGATCY 3 cut(s) 247, 310, 727
PsyI GACNNNGTC 2 cut(s) 241, 880
PteI GCGCGC 1 cut(s) 34
RsaI GTAC 2 cut(s) 99, 998
RsaNI GTAC 2 cut(s) 98, 997
SacI GAGCTC 1 cut(s) 111
SalI GTCGAC 1 cut(s) 68
SaqAI TTAA 2 cut(s) 642, 689
SatI GCNGC 6 cut(s) 60, 63, 189, 203, 822, 887
Sau3AI GATC 5 cut(s) 247, 310, 552, 727, 733
SchI GAGTC 1 cut(s) 390
ScrFI CCNGG 3 cut(s) 184, 185, 212
SduI GDGCHC 2 cut(s) 111, 156
SfaNI GCATC 2 cut(s) 855, 877
Sfr274I CTCGAG 1 cut(s) 302
SlaI CTCGAG 1 cut(s) 302
SmaI CCCGGG 1 cut(s) 185
SmlI CTYRAG 3 cut(s) 302, 641, 688
SmoI CTYRAG 3 cut(s) 302, 641, 688
Sse9I AATT 4 cut(s) 575, 659, 746, 800
SsiI CCGC 7 cut(s) 5, 25, 60, 63, 163, 188, 219
SspI AATATT 1 cut(s) 896
SstI GAGCTC 1 cut(s) 111
StyD4I CCNGG 3 cut(s) 182, 183, 210
StyI CCWWGG 3 cut(s) 606, 860, 872
TaaI ACNGT 2 cut(s) 451, 794
TaiI ACGT 1 cut(s) 277
TaqI TCGA 3 cut(s) 69, 303, 539
TasI AATT 4 cut(s) 575, 659, 746, 800
TatI WGTACW 1 cut(s) 996
TauI GCSGC 3 cut(s) 62, 65, 191
TfiI GAWTC 2 cut(s) 667, 696
Tru1I TTAA 2 cut(s) 642, 689
Tru9I TTAA 2 cut(s) 642, 689
TscAI CASTG 1 cut(s) 370
TseFI GTSAC 2 cut(s) 28, 275
TseI GCWGC 3 cut(s) 202, 821, 886
Tsp45I GTSAC 2 cut(s) 28, 275
TspDTI ATGAA 2 cut(s) 56, 561
TspMI CCCGGG 1 cut(s) 183
TspRI CASTG 1 cut(s) 370
Tth111I GACNNNGTC 2 cut(s) 241, 880
Vha464I CTTAAG 2 cut(s) 641, 688
XapI RAATTY 2 cut(s) 746, 800
XceI RCATGY 1 cut(s) 569
XhoI CTCGAG 1 cut(s) 302
XmaI CCCGGG 1 cut(s) 183
XmiI GTMKAC 1 cut(s) 69
Zsp2I ATGCAT 1 cut(s) 870
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.