FvH4_2g33530

Belongs to the cyclin family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
25125530 .. 25128807
3278 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g33530.t1

Sequence Viewer

Length: 1098 bp
ATGTCGGAGAAAGAGAACTGCGTCCGCGTCACGCGCGCAATGAAGCGGAAGGCCGAAGAAGCCGCAGCCGCCGTCGAGCGAACGCCGAACAAGAAGCGCGTCGTGCTGGGCGAGCTTCCCAGGCTCCAAAACGCCGCAGCTCCGAACCCTGTTGAGCCGCAGAAGCGGAAATGCAGCACTAAATCCCGGGCCGCGAAAAAACCGCGGCCAATCCCGGAACTCGCGCCGCCGAAGACAGAGGAGGTCGAAACGACGCCGTCAGATCCCCAAATGTGCGAGCCTTATGCTCGCGACATTTACGAGTATCTCCACAAGCTAGAGGTGGATCCAAATAGAAGGCCTTTGCCGGATTACATTGCGAAGGTTCAGAAGGATATCACTGCAAATATGAGAGGAGTGTTGGTGGACTGGTTGGTGGAAGTTGCTGAGGAATACAAGCTCCTTCCTGATACTCTCTACCTCACCGTTTCGTATGTCGATAGGTTCCTTTCTTTCAATGCTCTCAATCGGAAAATGCTTCAATTACTTGGTGTTTCTTCAATGCTCGTCGCTTCGAAGTATGAGGAGATCACACCTCCACATGTGGAAGAATTGTGTTACATAACAGATAATACATACACTAAGGAAGATGTGTGCAAAATGGAGGCTGATATACTTAAGGTCTTGAAGTTTGAATTGGGCAATCCTACAATAAAGACAATTTTAAGGAGATTCAATAGAGTTGCTGAAGAGGGCAACAAAGATCCTGATCTGCATTTTGAATTTCTGGGCTACTACCTTGCAGAGCTAAGCTTGTTAGACTACAACTGTGTCAAATTTTTGCCTTCTTTGGTGGCTGCATCTGTTGTATTTCTTACAAGATTTATCATCCAACCAAGGATGAATCCATGGACTTCATCGCTGCAACAATATTCAGGATATAAACCATCTGAGTTGAAAGAATGTGTCCTTATCATACATGACTTGTATTTGGGTAGACGAGGAGGGTCTCTGCAAGCTATAAGAGAAAAGTACAAAAGACATAAGTTCAAATGTGTGGCAGTGATGCCTTCTCCTCCAGAGGTACCTGCATACTTTTTTGAAGATGTTATAGAATGA

Protein Analysis

366

Amino Acids

41.97

Weight (kDa)

8.45

Isoelectric Point (pI)

48.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 98 - 226 3.7e-46 Cyclin, N-terminal domain
Cyclin_C PF02984 229 - 351 3e-33 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000541)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47210 AT1G47210 AT1G47220 AT1G47230 AT1G47230 AT2G01310 AT5G43080 AT5G43080
fragaria_vesca FvH4_2g04770 FvH4_2g04770 FvH4_2g04770 FvH4_2g33510 FvH4_2g33510 FvH4_2g33510 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33530 FvH4_2g33530
malus_domestica MD05G1092000.v1.1 MD08G1091000.v1.1 MD08G1091200.v1.1 MD10G1100200.v1.1 MD10G1100700.v1.1 MD12G1105600.v1.1 MD15G1075100.v1.1 MD15G1075200.v1.1
prunus_persica Prupe.1G428000_v2.0.a1 Prupe.1G428100_v2.0.a1 Prupe.4G285800_v2.0.a1 Prupe.8G137700_v2.0.a1 Prupe.8G137700_v2.0.a1
pyrus_communis pycom05g09170 pycom08g07360 pycom08g07370 pycom15g07000 pycom15g07020
rosa_chinensis RchiOBHm_Chr3g0465621 RchiOBHm_Chr6g0254421 RchiOBHm_Chr6g0254451 RchiOBHm_Chr6g0308961 RchiOBHm_Chr6g0308971 RchiOBHm_Chr6g0308991 RchiOBHm_Chr7g0190851
rosa_laevigata RLG00000003915 RLG00000010598 RLG00000010599 RLG00000010600 RLG00000014913
rosa_multiflora Rmu_sc0009578.1_g000002 Rmu_sc0009578.1_g000003 Rmu_sc0029942.1_g000001 Rmu_sc0036151.1_g000001 Rmu_sc0036151.1_g000002 Rmu_sc0037719.1_g000001 Rmu_sc0042877.1_g000001 Rmu_ssc0000481.1_g000003
rosa_roxburghii Rroxscaffold_7G00159740 Rroxscaffold_7G00159750 Rroxscaffold_7G00159760 Rroxscaffold_7G00159770 Rroxscaffold_7G00210810
rosa_rugosa Rorug05G0552200 Rorug05G0552300 Rorug05G0552400
rosa_samantha Rh3CG081000 Rh6AG069300 Rh6AG481300 Rh6AG481600 Rh6BG062000 Rh6BG490400 Rh6BG490500 Rh6BG490600 Rh6CG062100 Rh6CG495700 Rh6CG495900 Rh6DG059100 Rh6DG481600 Rh6DG481700 Rh6DG481800
rosa_wichuraiana Rw6G006090 Rw6G041930 Rw6G041940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1075
Acc65I GGTACC 1 cut(s) 1063
AccB1I GGYRCC 1 cut(s) 1063
AccI GTMKAC 1 cut(s) 976
AccII CGCG 8 cut(s) 27, 34, 36, 99, 194, 205, 224, 291
AclWI GGATC 4 cut(s) 257, 320, 333, 737
AcoI YGGCCR 1 cut(s) 206
AcsI RAATTY 2 cut(s) 761, 815
AcuI CTGAAG 1 cut(s) 747
AcyI GRCGYC 1 cut(s) 254
AfaI GTAC 2 cut(s) 1013, 1065
AflII CTTAAG 1 cut(s) 656
AflIII ACRYGT 1 cut(s) 580
AjnI CCWGG 1 cut(s) 119
AjuI GAANNNNNNNTTGG 2 cut(s) 659, 691
AluBI AGCT 7 cut(s) 115, 140, 316, 439, 787, 792, 998
AluI AGCT 7 cut(s) 115, 140, 316, 439, 787, 792, 998
Alw26I GTCTC 1 cut(s) 993
AlwI GGATC 4 cut(s) 257, 320, 333, 737
Ama87I CYCGRG 1 cut(s) 186
AoxI GGCC 4 cut(s) 51, 189, 206, 338
ApeKI GCWGC 5 cut(s) 65, 137, 174, 836, 901
ApoI RAATTY 2 cut(s) 761, 815
Asp718I GGTACC 1 cut(s) 1063
AspLEI GCGC 4 cut(s) 36, 38, 99, 226
AspS9I GGNCC 1 cut(s) 189
AsuC2I CCSGG 3 cut(s) 187, 188, 215
AsuHPI GGTGA 1 cut(s) 454
AsuII TTCGAA 1 cut(s) 554
AvaI CYCGRG 1 cut(s) 186
BamHI GGATCC 1 cut(s) 325
BanI GGYRCC 1 cut(s) 1063
BbsI GAAGAC 1 cut(s) 239
BbvCI CCTCAGC 1 cut(s) 426
BbvI GCAGC 5 cut(s) 77, 149, 186, 823, 888
BccI CCATC 1 cut(s) 934
BceAI ACGGC 2 cut(s) 56, 241
BcgI CGANNNNNNTGC 2 cut(s) 266, 300
BciT130I CCWGG 1 cut(s) 121
BcnI CCSGG 3 cut(s) 187, 188, 215
BcoDI GTCTC 1 cut(s) 993
BfaI CTAG 1 cut(s) 317
BfrI CTTAAG 1 cut(s) 656
BfuAI ACCTGC 1 cut(s) 1075
BlpI GCTNAGC 1 cut(s) 788
Bme1390I CCNGG 4 cut(s) 121, 187, 188, 215
BmeT110I CYCGRG 1 cut(s) 186
BmgT120I GGNCC 1 cut(s) 189
BmiI GGNNCC 4 cut(s) 125, 327, 485, 1065
BmrFI CCNGG 4 cut(s) 121, 187, 188, 215
BmsI GCATC 2 cut(s) 848, 1035
BpiI GAAGAC 1 cut(s) 239
BpmI CTGGAG 1 cut(s) 1041
Bpu10I CCTNAGC 1 cut(s) 426
Bpu1102I GCTNAGC 1 cut(s) 788
Bpu14I TTCGAA 1 cut(s) 554
BpuMI CCSGG 3 cut(s) 187, 188, 215
BsaBI GATNNNNATC 1 cut(s) 747
BsaHI GRCGYC 1 cut(s) 254
BsaI GGTCTC 1 cut(s) 993
BsaJI CCNNGG 5 cut(s) 119, 186, 203, 875, 887
BsaXI ACNNNNNCTCC 2 cut(s) 387, 417
Bse1I ACTGG 1 cut(s) 413
Bse3DI GCAATG 2 cut(s) 45, 354
Bse8I GATNNNNATC 1 cut(s) 747
BseBI CCWGG 1 cut(s) 121
BseDI CCNNGG 5 cut(s) 119, 186, 203, 875, 887
BseGI GGATG 2 cut(s) 867, 885
BseJI GATNNNNATC 1 cut(s) 747
BseMI GCAATG 2 cut(s) 45, 354
BseMII CTCAG 2 cut(s) 417, 921
BseNI ACTGG 1 cut(s) 413
BsePI GCGCGC 1 cut(s) 34
BseRI GAGGAG 5 cut(s) 254, 408, 578, 996, 1044
BseXI GCAGC 5 cut(s) 77, 149, 186, 823, 888
BseYI CCCAGC 1 cut(s) 106
Bsh1236I CGCG 8 cut(s) 27, 34, 36, 99, 194, 205, 224, 291
BshFI GGCC 4 cut(s) 53, 191, 208, 340
BshNI GGYRCC 1 cut(s) 1063
BsiHKCI CYCGRG 1 cut(s) 186
BsiSI CCGG 3 cut(s) 187, 215, 347
BsmAI GTCTC 1 cut(s) 993
BsnI GGCC 4 cut(s) 53, 191, 208, 340
Bso31I GGTCTC 1 cut(s) 993
BsoBI CYCGRG 1 cut(s) 186
Bsp119I TTCGAA 1 cut(s) 554
Bsp143I GATC 5 cut(s) 262, 325, 567, 742, 748
Bsp1720I GCTNAGC 1 cut(s) 788
Bsp19I CCATGG 1 cut(s) 887
Bsp68I TCGCGA 1 cut(s) 291
BspANI GGCC 4 cut(s) 53, 191, 208, 340
BspCNI CTCAG 2 cut(s) 418, 922
BspFNI CGCG 8 cut(s) 27, 34, 36, 99, 194, 205, 224, 291
BspLI GGNNCC 4 cut(s) 125, 327, 485, 1065
BspMI ACCTGC 1 cut(s) 1075
BspPI GGATC 4 cut(s) 257, 320, 333, 737
BspT104I TTCGAA 1 cut(s) 554
BspT107I GGYRCC 1 cut(s) 1063
BspTI CTTAAG 1 cut(s) 656
BspTNI GGTCTC 1 cut(s) 993
BsrDI GCAATG 2 cut(s) 45, 354
BsrI ACTGG 1 cut(s) 413
BssECI CCNNGG 5 cut(s) 119, 186, 203, 875, 887
BssHII GCGCGC 1 cut(s) 34
BssMI GATC 5 cut(s) 262, 325, 567, 742, 748
BssNI GRCGYC 1 cut(s) 254
BssT1I CCWWGG 2 cut(s) 875, 887
Bst2UI CCWGG 1 cut(s) 121
Bst4CI ACNGT 2 cut(s) 466, 809
Bst6I CTCTTC 1 cut(s) 723
BstACI GRCGYC 1 cut(s) 254
BstAFI CTTAAG 1 cut(s) 656
BstBI TTCGAA 1 cut(s) 554
BstC8I GCNNGC 5 cut(s) 36, 113, 278, 289, 996
BstDEI CTNAG 4 cut(s) 426, 621, 788, 930
BstDSI CCRYGG 2 cut(s) 203, 887
BstF5I GGATG 2 cut(s) 867, 885
BstFNI CGCG 8 cut(s) 27, 34, 36, 99, 194, 205, 224, 291
BstHHI GCGC 4 cut(s) 36, 38, 99, 226
BstKTI GATC 5 cut(s) 265, 328, 570, 745, 751
BstMAI GTCTC 1 cut(s) 993
BstMBI GATC 5 cut(s) 262, 325, 567, 742, 748
BstMWI GCNNNNNNNGC 7 cut(s) 33, 59, 68, 103, 112, 121, 163
BstNI CCWGG 1 cut(s) 121
BstNSI RCATGY 1 cut(s) 584
BstSCI CCNGG 4 cut(s) 119, 185, 186, 213
BstUI CGCG 8 cut(s) 27, 34, 36, 99, 194, 205, 224, 291
BstV1I GCAGC 5 cut(s) 77, 149, 186, 823, 888
BstV2I GAAGAC 1 cut(s) 239
BstX2I RGATCY 3 cut(s) 262, 325, 742
BstYI RGATCY 3 cut(s) 262, 325, 742
BsuRI GGCC 4 cut(s) 53, 191, 208, 340
BtgI CCRYGG 2 cut(s) 203, 887
BtgZI GCGATG 1 cut(s) 882
BtsCI GGATG 2 cut(s) 867, 885
BtsI GCAGTG 2 cut(s) 378, 1047
BtsIMutI CAGTG 2 cut(s) 378, 1047
BtuMI TCGCGA 1 cut(s) 291
BveI ACCTGC 1 cut(s) 1075
Cac8I GCNNGC 5 cut(s) 36, 113, 278, 289, 996
CfoI GCGC 4 cut(s) 36, 38, 99, 226
Cfr13I GGNCC 1 cut(s) 189
Cfr42I CCGCGG 1 cut(s) 206
Cfr9I CCCGGG 1 cut(s) 186
CseI GACGC 4 cut(s) 10, 16, 88, 262
Csp6I GTAC 2 cut(s) 1012, 1064
CviAII CATG 3 cut(s) 581, 888, 959
CviQI GTAC 2 cut(s) 1012, 1064
DdeI CTNAG 4 cut(s) 426, 621, 788, 930
DpnI GATC 5 cut(s) 264, 327, 569, 744, 750
DpnII GATC 5 cut(s) 262, 325, 567, 742, 748
EaeI YGGCCR 1 cut(s) 206
Eam1104I CTCTTC 1 cut(s) 723
EarI CTCTTC 1 cut(s) 723
Eco130I CCWWGG 2 cut(s) 875, 887
Eco147I AGGCCT 1 cut(s) 340
Eco31I GGTCTC 1 cut(s) 993
Eco32I GATATC 1 cut(s) 376
Eco57I CTGAAG 1 cut(s) 747
Eco88I CYCGRG 1 cut(s) 186
EcoRII CCWGG 1 cut(s) 119
EcoRV GATATC 1 cut(s) 376
EcoT14I CCWWGG 2 cut(s) 875, 887
ErhI CCWWGG 2 cut(s) 875, 887
FaeI CATG 3 cut(s) 584, 891, 962
FatI CATG 3 cut(s) 580, 887, 958
FblI GTMKAC 1 cut(s) 976
FokI GGATG 2 cut(s) 854, 892
FspBI CTAG 1 cut(s) 317
GlaI GCGC 4 cut(s) 35, 37, 98, 225
GsaI CCCAGC 1 cut(s) 110
GsuI CTGGAG 1 cut(s) 1041
HaeIII GGCC 4 cut(s) 53, 191, 208, 340
HapII CCGG 3 cut(s) 187, 215, 347
HgaI GACGC 4 cut(s) 10, 16, 88, 262
HhaI GCGC 4 cut(s) 36, 38, 99, 226
Hin1I GRCGYC 1 cut(s) 254
Hin1II CATG 3 cut(s) 584, 891, 962
Hin6I GCGC 4 cut(s) 34, 36, 97, 224
HinP1I GCGC 4 cut(s) 34, 36, 97, 224
HindIII AAGCTT 1 cut(s) 790
HinfI GANTC 2 cut(s) 711, 883
HpaII CCGG 3 cut(s) 187, 215, 347
HphI GGTGA 1 cut(s) 454
Hpy166II GTNNAC 2 cut(s) 406, 977
Hpy188I TCNGA 6 cut(s) 7, 144, 262, 369, 510, 931
Hpy188III TCNNGA 6 cut(s) 290, 446, 664, 746, 915, 1058
Hpy8I GTNNAC 2 cut(s) 406, 977
Hpy99I CGWCG 4 cut(s) 77, 104, 256, 551
HpyAV CCTTC 7 cut(s) 43, 330, 355, 364, 452, 834, 1059
HpyCH4III ACNGT 2 cut(s) 466, 809
HpyCH4V TGCA 9 cut(s) 174, 383, 636, 754, 782, 839, 904, 994, 1070
HpyF10VI GCNNNNNNNGC 7 cut(s) 33, 59, 68, 103, 112, 121, 163
HpyF3I CTNAG 4 cut(s) 426, 621, 788, 930
Hsp92I GRCGYC 1 cut(s) 254
Hsp92II CATG 3 cut(s) 584, 891, 962
HspAI GCGC 4 cut(s) 34, 36, 97, 224
KpnI GGTACC 1 cut(s) 1067
KspI CCGCGG 1 cut(s) 206
Kzo9I GATC 5 cut(s) 262, 325, 567, 742, 748
LmnI GCTCC 3 cut(s) 129, 145, 444
Lsp1109I GCAGC 5 cut(s) 77, 149, 186, 823, 888
LweI GCATC 2 cut(s) 848, 1035
MaeI CTAG 1 cut(s) 317
MaeIII GTNAC 2 cut(s) 28, 596
MalI GATC 5 cut(s) 264, 327, 569, 744, 750
MboI GATC 5 cut(s) 262, 325, 567, 742, 748
MboII GAAGA 7 cut(s) 68, 244, 528, 599, 638, 740, 1094
MflI RGATCY 3 cut(s) 262, 325, 742
MluCI AATT 6 cut(s) 521, 590, 674, 699, 761, 815
MmeI TCCRAC 1 cut(s) 895
MseI TTAA 2 cut(s) 657, 704
MspA1I CMGCKG 1 cut(s) 205
MspCI CTTAAG 1 cut(s) 656
MspI CCGG 3 cut(s) 187, 215, 347
MspR9I CCNGG 4 cut(s) 121, 187, 188, 215
MvaI CCWGG 1 cut(s) 121
MvnI CGCG 8 cut(s) 27, 34, 36, 99, 194, 205, 224, 291
MwoI GCNNNNNNNGC 7 cut(s) 33, 59, 68, 103, 112, 121, 163
NciI CCSGG 3 cut(s) 187, 188, 215
NcoI CCATGG 1 cut(s) 887
NdeII GATC 5 cut(s) 262, 325, 567, 742, 748
NlaIII CATG 3 cut(s) 584, 891, 962
NlaIV GGNNCC 4 cut(s) 125, 327, 485, 1065
NmuCI GTSAC 1 cut(s) 28
NruI TCGCGA 1 cut(s) 291
NspI RCATGY 1 cut(s) 584
NspV TTCGAA 1 cut(s) 554
PauI GCGCGC 1 cut(s) 34
PceI AGGCCT 1 cut(s) 340
PciI ACATGT 1 cut(s) 580
PcsI WCGNNNNNNNCGW 1 cut(s) 108
PfeI GAWTC 2 cut(s) 711, 883
PflFI GACNNNGTC 1 cut(s) 256
PfoI TCCNGGA 1 cut(s) 213
PscI ACATGT 1 cut(s) 580
Psp6I CCWGG 1 cut(s) 119
PspFI CCCAGC 1 cut(s) 106
PspGI CCWGG 1 cut(s) 119
PspN4I GGNNCC 4 cut(s) 125, 327, 485, 1065
PspPI GGNCC 1 cut(s) 189
PsuI RGATCY 3 cut(s) 262, 325, 742
PsyI GACNNNGTC 1 cut(s) 256
PteI GCGCGC 1 cut(s) 34
RruI TCGCGA 1 cut(s) 291
RsaI GTAC 2 cut(s) 1013, 1065
RsaNI GTAC 2 cut(s) 1012, 1064
SacII CCGCGG 1 cut(s) 206
SaqAI TTAA 2 cut(s) 657, 704
Sau3AI GATC 5 cut(s) 262, 325, 567, 742, 748
Sau96I GGNCC 1 cut(s) 189
ScrFI CCNGG 4 cut(s) 121, 187, 188, 215
SfaNI GCATC 2 cut(s) 848, 1035
Sfr303I CCGCGG 1 cut(s) 206
SfuI TTCGAA 1 cut(s) 554
SgrBI CCGCGG 1 cut(s) 206
SmaI CCCGGG 1 cut(s) 188
SmlI CTYRAG 1 cut(s) 656
SmoI CTYRAG 1 cut(s) 656
Sse9I AATT 6 cut(s) 521, 590, 674, 699, 761, 815
SseBI AGGCCT 1 cut(s) 340
SspI AATATT 1 cut(s) 911
SspMI CTAG 1 cut(s) 317
StuI AGGCCT 1 cut(s) 340
StyD4I CCNGG 4 cut(s) 119, 185, 186, 213
StyI CCWWGG 2 cut(s) 875, 887
TaaI ACNGT 2 cut(s) 466, 809
TaqI TCGA 4 cut(s) 75, 246, 477, 554
TasI AATT 6 cut(s) 521, 590, 674, 699, 761, 815
TatI WGTACW 1 cut(s) 1011
TauI GCSGC 7 cut(s) 65, 71, 137, 160, 194, 208, 229
TfiI GAWTC 2 cut(s) 711, 883
Tru1I TTAA 2 cut(s) 657, 704
Tru9I TTAA 2 cut(s) 657, 704
TscAI CASTG 2 cut(s) 385, 1047
TseFI GTSAC 1 cut(s) 28
TseI GCWGC 5 cut(s) 65, 137, 174, 836, 901
Tsp45I GTSAC 1 cut(s) 28
TspDTI ATGAA 3 cut(s) 56, 885, 896
TspMI CCCGGG 1 cut(s) 186
TspRI CASTG 2 cut(s) 385, 1047
Tth111I GACNNNGTC 1 cut(s) 256
Vha464I CTTAAG 1 cut(s) 656
XapI RAATTY 2 cut(s) 761, 815
XceI RCATGY 1 cut(s) 584
XmaI CCCGGG 1 cut(s) 186
XmiI GTMKAC 1 cut(s) 976
XspI CTAG 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.