Rh6BG490600

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000541
Physical Location & Seq
Reverse (-)
69410553 .. 69412576
2024 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG490600.1

Sequence Viewer

Length: 678 bp
ATGGCTTCTTTCACTGTGGCCGAGAAATGCGCTCCGATTACGCGCGCCGCGGCGAAGAGGAGGGCGGCGGCGGCGGCCTTGGCCGAGGAGCAGCAGCTGGCGACTAAGAAGCGCGCCGTGCTCGGAGATCTCACCAACTTTGCAAACGTCGTCGTTTTGGCCTCAAAAAACCCCAATTCCGATTCTGCGCTAAAGAAACCCAAACGGAGAGCTGTGCTGGAACGTGACAATGAAGACCCACAGCTTTGTGGGCCTTATGCTTCTGATATCTATGCCTATCTTCGCAGAATGGAGGTGGAACCAAAAAGGAGGTCATTGCCTGATTACATGGAGAGAATTCAGAAGGATGCTATTAATGCTAATATGAGAGGGATTCTTGTGGATTGGTTGGTGGAGGTTGCAGATGAATTTAAACTTCTTCCAGACACTCTTCATCTATCTGTTTCCTATGTTGATAAATATTTGTCGATGAATGTGATCAATAAGCATAAGCTTCAGCTATTGGGAGTTGCTTCAATGTTCATTGCCTCAAAGTATGAGGAGATTAATCCTCCACATGTGGATGAGCTTAGTGACATGACAGAAAATACATACAGTAAAGCAGAGTTCAAATATGTGGCAAACCTTCCCTGCCCTCCAGAGCTACCAGCTCCTTTGTTTGATAATGTGAAGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

225

Amino Acids

25.23

Weight (kDa)

7.66

Isoelectric Point (pI)

47.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 89 - 204 1.6e-35 Cyclin, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000541)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47210 AT1G47210 AT1G47220 AT1G47230 AT1G47230 AT2G01310 AT5G43080 AT5G43080
fragaria_vesca FvH4_2g04770 FvH4_2g04770 FvH4_2g04770 FvH4_2g33510 FvH4_2g33510 FvH4_2g33510 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33530 FvH4_2g33530
malus_domestica MD05G1092000.v1.1 MD08G1091000.v1.1 MD08G1091200.v1.1 MD10G1100200.v1.1 MD10G1100700.v1.1 MD12G1105600.v1.1 MD15G1075100.v1.1 MD15G1075200.v1.1
prunus_persica Prupe.1G428000_v2.0.a1 Prupe.1G428100_v2.0.a1 Prupe.4G285800_v2.0.a1 Prupe.8G137700_v2.0.a1 Prupe.8G137700_v2.0.a1
pyrus_communis pycom05g09170 pycom08g07360 pycom08g07370 pycom15g07000 pycom15g07020
rosa_chinensis RchiOBHm_Chr3g0465621 RchiOBHm_Chr6g0254421 RchiOBHm_Chr6g0254451 RchiOBHm_Chr6g0308961 RchiOBHm_Chr6g0308971 RchiOBHm_Chr6g0308991 RchiOBHm_Chr7g0190851
rosa_laevigata RLG00000003915 RLG00000010598 RLG00000010599 RLG00000010600 RLG00000014913
rosa_multiflora Rmu_sc0009578.1_g000002 Rmu_sc0009578.1_g000003 Rmu_sc0029942.1_g000001 Rmu_sc0036151.1_g000001 Rmu_sc0036151.1_g000002 Rmu_sc0037719.1_g000001 Rmu_sc0042877.1_g000001 Rmu_ssc0000481.1_g000003
rosa_roxburghii Rroxscaffold_7G00159740 Rroxscaffold_7G00159750 Rroxscaffold_7G00159760 Rroxscaffold_7G00159770 Rroxscaffold_7G00210810
rosa_rugosa Rorug05G0552200 Rorug05G0552300 Rorug05G0552400
rosa_samantha Rh3CG081000 Rh6AG069300 Rh6AG481300 Rh6AG481600 Rh6BG062000 Rh6BG490400 Rh6BG490500 Rh6BG490600 Rh6CG062100 Rh6CG495700 Rh6CG495900 Rh6DG059100 Rh6DG481600 Rh6DG481700 Rh6DG481800
rosa_wichuraiana Rw6G006090 Rw6G041930 Rw6G041940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 43, 45, 50, 114
AciI CCGC 6 cut(s) 48, 50, 65, 68, 71, 74
AcoI YGGCCR 2 cut(s) 18, 81
AcsI RAATTY 2 cut(s) 336, 407
AcuI CTGAAG 1 cut(s) 479
AflIII ACRYGT 1 cut(s) 556
AgsI TTSAA 2 cut(s) 516, 610
AluBI AGCT 8 cut(s) 97, 212, 244, 493, 499, 568, 643, 650
AluI AGCT 8 cut(s) 97, 212, 244, 493, 499, 568, 643, 650
Alw21I GWGCWC 1 cut(s) 123
AlwNI CAGNNNCTG 1 cut(s) 97
AoxI GGCC 5 cut(s) 18, 75, 81, 159, 251
ApeKI GCWGC 2 cut(s) 91, 94
ApoI RAATTY 2 cut(s) 336, 407
ArsI GACNNNNNNTTYG 2 cut(s) 296, 328
AseI ATTAAT 2 cut(s) 354, 546
AspLEI GCGC 6 cut(s) 32, 45, 47, 114, 116, 190
AspS9I GGNCC 1 cut(s) 251
AsuHPI GGTGA 1 cut(s) 124
BbsI GAAGAC 1 cut(s) 240
Bbv12I GWGCWC 1 cut(s) 123
BbvI GCAGC 2 cut(s) 103, 106
BceAI ACGGC 1 cut(s) 101
BclI TGATCA 1 cut(s) 477
BglII AGATCT 1 cut(s) 127
BisI GCNGC 8 cut(s) 48, 51, 66, 69, 72, 75, 92, 95
BlsI GCNGC 8 cut(s) 49, 52, 67, 70, 73, 76, 93, 96
BmgT120I GGNCC 1 cut(s) 251
BmiI GGNNCC 1 cut(s) 300
BmsI GCATC 1 cut(s) 337
BpiI GAAGAC 1 cut(s) 240
BpmI CTGGAG 1 cut(s) 621
BsaJI CCNNGG 3 cut(s) 48, 78, 84
Bse3DI GCAATG 2 cut(s) 314, 522
BseDI CCNNGG 3 cut(s) 48, 78, 84
BseGI GGATG 2 cut(s) 352, 568
BseMI GCAATG 2 cut(s) 314, 522
BsePI GCGCGC 2 cut(s) 43, 112
BseRI GAGGAG 3 cut(s) 73, 101, 554
BseXI GCAGC 2 cut(s) 103, 106
Bsh1236I CGCG 4 cut(s) 43, 45, 50, 114
BshFI GGCC 5 cut(s) 20, 77, 83, 161, 253
BsiHKAI GWGCWC 1 cut(s) 123
BsnI GGCC 5 cut(s) 20, 77, 83, 161, 253
Bsp1286I GDGCHC 1 cut(s) 123
Bsp143I GATC 2 cut(s) 127, 477
BspACI CCGC 6 cut(s) 48, 50, 65, 68, 71, 74
BspANI GGCC 5 cut(s) 20, 77, 83, 161, 253
BspFNI CGCG 4 cut(s) 43, 45, 50, 114
BspLI GGNNCC 1 cut(s) 300
BsrDI GCAATG 2 cut(s) 314, 522
BssECI CCNNGG 3 cut(s) 48, 78, 84
BssHII GCGCGC 2 cut(s) 43, 112
BssMI GATC 2 cut(s) 127, 477
BssT1I CCWWGG 1 cut(s) 78
Bst4CI ACNGT 2 cut(s) 16, 596
Bst6I CTCTTC 2 cut(s) 50, 435
BstC8I GCNNGC 3 cut(s) 45, 99, 114
BstDEI CTNAG 2 cut(s) 105, 569
BstDSI CCRYGG 1 cut(s) 48
BstF5I GGATG 2 cut(s) 352, 568
BstFNI CGCG 4 cut(s) 43, 45, 50, 114
BstHHI GCGC 6 cut(s) 32, 45, 47, 114, 116, 190
BstKTI GATC 2 cut(s) 130, 480
BstMBI GATC 2 cut(s) 127, 477
BstMWI GCNNNNNNNGC 6 cut(s) 71, 74, 80, 118, 250, 356
BstNSI RCATGY 1 cut(s) 560
BstUI CGCG 4 cut(s) 43, 45, 50, 114
BstV1I GCAGC 2 cut(s) 103, 106
BstV2I GAAGAC 1 cut(s) 240
BstX2I RGATCY 1 cut(s) 127
BstYI RGATCY 1 cut(s) 127
BsuRI GGCC 5 cut(s) 20, 77, 83, 161, 253
BtgI CCRYGG 1 cut(s) 48
BtsCI GGATG 2 cut(s) 352, 568
BtsIMutI CAGTG 1 cut(s) 12
Cac8I GCNNGC 3 cut(s) 45, 99, 114
CaiI CAGNNNCTG 1 cut(s) 97
CfoI GCGC 6 cut(s) 32, 45, 47, 114, 116, 190
Cfr13I GGNCC 1 cut(s) 251
Cfr42I CCGCGG 1 cut(s) 51
CviAII CATG 4 cut(s) 328, 557, 577, 675
DdeI CTNAG 2 cut(s) 105, 569
DpnI GATC 2 cut(s) 129, 479
DpnII GATC 2 cut(s) 127, 477
DraI TTTAAA 1 cut(s) 412
EaeI YGGCCR 2 cut(s) 18, 81
Eam1104I CTCTTC 2 cut(s) 50, 435
EarI CTCTTC 2 cut(s) 50, 435
Eco130I CCWWGG 1 cut(s) 78
Eco32I GATATC 1 cut(s) 268
Eco57I CTGAAG 1 cut(s) 479
EcoRI GAATTC 1 cut(s) 336
EcoRV GATATC 1 cut(s) 268
EcoT14I CCWWGG 1 cut(s) 78
ErhI CCWWGG 1 cut(s) 78
FaeI CATG 4 cut(s) 331, 560, 580, 678
FatI CATG 4 cut(s) 327, 556, 576, 674
FbaI TGATCA 1 cut(s) 477
Fnu4HI GCNGC 8 cut(s) 48, 51, 66, 69, 72, 75, 92, 95
FokI GGATG 2 cut(s) 359, 575
Fsp4HI GCNGC 8 cut(s) 48, 51, 66, 69, 72, 75, 92, 95
GlaI GCGC 6 cut(s) 31, 44, 46, 113, 115, 189
GluI GCNGC 8 cut(s) 48, 51, 66, 69, 72, 75, 92, 95
GsuI CTGGAG 1 cut(s) 621
HaeIII GGCC 5 cut(s) 20, 77, 83, 161, 253
HhaI GCGC 6 cut(s) 32, 45, 47, 114, 116, 190
Hin1II CATG 4 cut(s) 331, 560, 580, 678
Hin6I GCGC 6 cut(s) 30, 43, 45, 112, 114, 188
HinP1I GCGC 6 cut(s) 30, 43, 45, 112, 114, 188
HindIII AAGCTT 1 cut(s) 491
HinfI GANTC 2 cut(s) 182, 373
HphI GGTGA 1 cut(s) 124
Hpy188I TCNGA 5 cut(s) 36, 125, 181, 265, 342
Hpy188III TCNNGA 2 cut(s) 422, 638
Hpy99I CGWCG 2 cut(s) 152, 155
HpyAV CCTTC 3 cut(s) 337, 635, 664
HpyCH4III ACNGT 2 cut(s) 16, 596
HpyCH4IV ACGT 2 cut(s) 147, 223
HpyCH4V TGCA 2 cut(s) 143, 401
HpyF10VI GCNNNNNNNGC 6 cut(s) 71, 74, 80, 118, 250, 356
HpyF3I CTNAG 2 cut(s) 105, 569
HpySE526I ACGT 2 cut(s) 147, 223
Hsp92II CATG 4 cut(s) 331, 560, 580, 678
HspAI GCGC 6 cut(s) 30, 43, 45, 112, 114, 188
Ksp22I TGATCA 1 cut(s) 477
KspI CCGCGG 1 cut(s) 51
Kzo9I GATC 2 cut(s) 127, 477
LmnI GCTCC 3 cut(s) 37, 88, 655
LpnPI CCDG 7 cut(s) 83, 203, 333, 435, 643, 651, 660
Lsp1109I GCAGC 2 cut(s) 103, 106
LweI GCATC 1 cut(s) 337
MaeII ACGT 2 cut(s) 147, 223
MaeIII GTNAC 2 cut(s) 224, 572
MalI GATC 2 cut(s) 129, 479
MboI GATC 2 cut(s) 127, 477
MboII GAAGA 5 cut(s) 67, 245, 272, 410, 422
MflI RGATCY 1 cut(s) 127
MhlI GDGCHC 1 cut(s) 123
MluCI AATT 3 cut(s) 175, 336, 407
MseI TTAA 3 cut(s) 354, 411, 546
MslI CAYNNNNRTG 1 cut(s) 561
MspA1I CMGCKG 2 cut(s) 50, 97
MvnI CGCG 4 cut(s) 43, 45, 50, 114
MwoI GCNNNNNNNGC 6 cut(s) 71, 74, 80, 118, 250, 356
NdeII GATC 2 cut(s) 127, 477
NlaIII CATG 4 cut(s) 331, 560, 580, 678
NlaIV GGNNCC 1 cut(s) 300
NmeAIII GCCGAG 2 cut(s) 46, 109
NmuCI GTSAC 2 cut(s) 224, 572
NspI RCATGY 1 cut(s) 560
PauI GCGCGC 2 cut(s) 43, 112
PciI ACATGT 1 cut(s) 556
PfeI GAWTC 2 cut(s) 182, 373
PkrI GCNGC 8 cut(s) 49, 52, 67, 70, 73, 76, 93, 96
PscI ACATGT 1 cut(s) 556
PshBI ATTAAT 2 cut(s) 354, 546
PspN4I GGNNCC 1 cut(s) 300
PspPI GGNCC 1 cut(s) 251
PstNI CAGNNNCTG 1 cut(s) 97
PsuI RGATCY 1 cut(s) 127
PteI GCGCGC 2 cut(s) 43, 112
PvuII CAGCTG 1 cut(s) 97
RseI CAYNNNNRTG 1 cut(s) 561
SacII CCGCGG 1 cut(s) 51
SaqAI TTAA 3 cut(s) 354, 411, 546
SatI GCNGC 8 cut(s) 48, 51, 66, 69, 72, 75, 92, 95
Sau3AI GATC 2 cut(s) 127, 477
Sau96I GGNCC 1 cut(s) 251
SduI GDGCHC 1 cut(s) 123
SfaNI GCATC 1 cut(s) 337
Sfr303I CCGCGG 1 cut(s) 51
SgrBI CCGCGG 1 cut(s) 51
SmiMI CAYNNNNRTG 1 cut(s) 561
Sse9I AATT 3 cut(s) 175, 336, 407
SsiI CCGC 6 cut(s) 48, 50, 65, 68, 71, 74
SspI AATATT 1 cut(s) 461
StyI CCWWGG 1 cut(s) 78
TaaI ACNGT 2 cut(s) 16, 596
TaiI ACGT 2 cut(s) 150, 226
TaqI TCGA 1 cut(s) 467
TasI AATT 3 cut(s) 175, 336, 407
TauI GCSGC 6 cut(s) 50, 53, 68, 71, 74, 77
TfiI GAWTC 2 cut(s) 182, 373
Tru1I TTAA 3 cut(s) 354, 411, 546
Tru9I TTAA 3 cut(s) 354, 411, 546
TscAI CASTG 1 cut(s) 19
TseFI GTSAC 2 cut(s) 224, 572
TseI GCWGC 2 cut(s) 91, 94
Tsp45I GTSAC 2 cut(s) 224, 572
TspDTI ATGAA 5 cut(s) 246, 420, 422, 485, 511
TspGWI ACGGA 1 cut(s) 220
TspRI CASTG 1 cut(s) 19
VspI ATTAAT 2 cut(s) 354, 546
XapI RAATTY 2 cut(s) 336, 407
XceI RCATGY 1 cut(s) 560
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.