Rh6DG481800

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000541
Physical Location & Seq
Reverse (-)
64573678 .. 64575704
2027 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG481800.1

Sequence Viewer

Length: 768 bp
ATGGCTTCGTTCACTGTGGCCGAGAAATGCGCTCCGATTACGCGCGCCGCGGCGAAGAGGAGGGCGGCGGCGGCGGCCTTGGCCGAGGAGCAGCAGCTGGCGACTAAGAAGCGCGCCGTGCTCGGAGATCTCACCAACTTTGCAAACGTCGTCGTTTTGGCCTCAAAAAACCCCAATTCCGATTCTGCGCTAAAGAAACCCAAACGGAGAGCTGTGCTGGAACGTGACAATGAAGACCCACAGCTTTGTGGGCCTTATGCTTCTGATATCTATGCCTATCTTCGCAGAATGGAGGTGGAACCAAAAAGGAGGTCATTGCCTGATTACATGGAGAGAATTCAGAAGGATGCTATTAATGCTAATATGAGAGGGATTCTTGTGGATTGGTTGGTGGAGGTTGCAGATGAATTTAAACTTCTTCCAGACACTCTTCATCTATCTGTTTCCTATGTTGATAAATATTTGTCGATGAATGTGATCAATAAGCAGAAGCTTCAGCTATTGGGAGTTGCTTCAATGTTCATTGCCTCATTAATGATTACATCAAAGATGAATCCTTGGTGTTCAACATTGCAACAATATACTGGATACATTGCAGCTGATTTGAAAGATTGTGTTCTTGTTCTTCATGACTTGTACTTGGGTAGAAGAGGAGGATTGTTACAAGTTGTGCGAGAGAAGTACAGACAGCATGAGTTCAAATATGTGGCAAACCTTCCCTGCCCTCCAGAGCTACCAGCTCCTTTGTTTGATAATGTGAAGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

255

Amino Acids

28.7

Weight (kDa)

9.18

Isoelectric Point (pI)

44.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 89 - 192 5.3e-26 Cyclin, N-terminal domain
Cyclin_C PF02984 170 - 241 6.7e-14 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000541)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47210 AT1G47210 AT1G47220 AT1G47230 AT1G47230 AT2G01310 AT5G43080 AT5G43080
fragaria_vesca FvH4_2g04770 FvH4_2g04770 FvH4_2g04770 FvH4_2g33510 FvH4_2g33510 FvH4_2g33510 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33530 FvH4_2g33530
malus_domestica MD05G1092000.v1.1 MD08G1091000.v1.1 MD08G1091200.v1.1 MD10G1100200.v1.1 MD10G1100700.v1.1 MD12G1105600.v1.1 MD15G1075100.v1.1 MD15G1075200.v1.1
prunus_persica Prupe.1G428000_v2.0.a1 Prupe.1G428100_v2.0.a1 Prupe.4G285800_v2.0.a1 Prupe.8G137700_v2.0.a1 Prupe.8G137700_v2.0.a1
pyrus_communis pycom05g09170 pycom08g07360 pycom08g07370 pycom15g07000 pycom15g07020
rosa_chinensis RchiOBHm_Chr3g0465621 RchiOBHm_Chr6g0254421 RchiOBHm_Chr6g0254451 RchiOBHm_Chr6g0308961 RchiOBHm_Chr6g0308971 RchiOBHm_Chr6g0308991 RchiOBHm_Chr7g0190851
rosa_laevigata RLG00000003915 RLG00000010598 RLG00000010599 RLG00000010600 RLG00000014913
rosa_multiflora Rmu_sc0009578.1_g000002 Rmu_sc0009578.1_g000003 Rmu_sc0029942.1_g000001 Rmu_sc0036151.1_g000001 Rmu_sc0036151.1_g000002 Rmu_sc0037719.1_g000001 Rmu_sc0042877.1_g000001 Rmu_ssc0000481.1_g000003
rosa_roxburghii Rroxscaffold_7G00159740 Rroxscaffold_7G00159750 Rroxscaffold_7G00159760 Rroxscaffold_7G00159770 Rroxscaffold_7G00210810
rosa_rugosa Rorug05G0552200 Rorug05G0552300 Rorug05G0552400
rosa_samantha Rh3CG081000 Rh6AG069300 Rh6AG481300 Rh6AG481600 Rh6BG062000 Rh6BG490400 Rh6BG490500 Rh6BG490600 Rh6CG062100 Rh6CG495700 Rh6CG495900 Rh6DG059100 Rh6DG481600 Rh6DG481700 Rh6DG481800
rosa_wichuraiana Rw6G006090 Rw6G041930 Rw6G041940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 43, 45, 50, 114
AciI CCGC 6 cut(s) 48, 50, 65, 68, 71, 74
AcoI YGGCCR 2 cut(s) 18, 81
AcsI RAATTY 2 cut(s) 336, 407
AcuI CTGAAG 1 cut(s) 479
AfaI GTAC 2 cut(s) 638, 683
AgsI TTSAA 4 cut(s) 516, 567, 607, 700
AluBI AGCT 8 cut(s) 97, 212, 244, 493, 499, 599, 733, 740
AluI AGCT 8 cut(s) 97, 212, 244, 493, 499, 599, 733, 740
Alw21I GWGCWC 1 cut(s) 123
AlwNI CAGNNNCTG 1 cut(s) 97
AoxI GGCC 5 cut(s) 18, 75, 81, 159, 251
ApeKI GCWGC 3 cut(s) 91, 94, 596
ApoI RAATTY 2 cut(s) 336, 407
ArsI GACNNNNNNTTYG 2 cut(s) 296, 328
AseI ATTAAT 2 cut(s) 354, 533
AspLEI GCGC 6 cut(s) 32, 45, 47, 114, 116, 190
AspS9I GGNCC 1 cut(s) 251
AsuHPI GGTGA 1 cut(s) 124
BbsI GAAGAC 1 cut(s) 240
Bbv12I GWGCWC 1 cut(s) 123
BbvI GCAGC 3 cut(s) 103, 106, 608
BceAI ACGGC 1 cut(s) 101
BciVI GTATCC 1 cut(s) 581
BclI TGATCA 1 cut(s) 477
BfuI GTATCC 1 cut(s) 581
BglII AGATCT 1 cut(s) 127
BisI GCNGC 9 cut(s) 48, 51, 66, 69, 72, 75, 92, 95, 597
BlsI GCNGC 9 cut(s) 49, 52, 67, 70, 73, 76, 93, 96, 598
BmgT120I GGNCC 1 cut(s) 251
BmiI GGNNCC 1 cut(s) 300
BmsI GCATC 1 cut(s) 337
BpiI GAAGAC 1 cut(s) 240
BpmI CTGGAG 1 cut(s) 711
BsaJI CCNNGG 4 cut(s) 48, 78, 84, 557
Bse1I ACTGG 1 cut(s) 589
Bse3DI GCAATG 4 cut(s) 314, 522, 569, 591
BseDI CCNNGG 4 cut(s) 48, 78, 84, 557
BseGI GGATG 1 cut(s) 352
BseMI GCAATG 4 cut(s) 314, 522, 569, 591
BseNI ACTGG 1 cut(s) 589
BsePI GCGCGC 2 cut(s) 43, 112
BseRI GAGGAG 3 cut(s) 73, 101, 666
BseXI GCAGC 3 cut(s) 103, 106, 608
Bsh1236I CGCG 4 cut(s) 43, 45, 50, 114
BshFI GGCC 5 cut(s) 20, 77, 83, 161, 253
BsiHKAI GWGCWC 1 cut(s) 123
BsnI GGCC 5 cut(s) 20, 77, 83, 161, 253
Bsp1286I GDGCHC 1 cut(s) 123
Bsp143I GATC 2 cut(s) 127, 477
BspACI CCGC 6 cut(s) 48, 50, 65, 68, 71, 74
BspANI GGCC 5 cut(s) 20, 77, 83, 161, 253
BspFNI CGCG 4 cut(s) 43, 45, 50, 114
BspHI TCATGA 1 cut(s) 628
BspLI GGNNCC 1 cut(s) 300
BsrDI GCAATG 4 cut(s) 314, 522, 569, 591
BsrI ACTGG 1 cut(s) 589
BssECI CCNNGG 4 cut(s) 48, 78, 84, 557
BssHII GCGCGC 2 cut(s) 43, 112
BssMI GATC 2 cut(s) 127, 477
BssT1I CCWWGG 2 cut(s) 78, 557
Bst4CI ACNGT 1 cut(s) 16
Bst6I CTCTTC 3 cut(s) 50, 435, 643
BstC8I GCNNGC 3 cut(s) 45, 99, 114
BstDEI CTNAG 1 cut(s) 105
BstDSI CCRYGG 1 cut(s) 48
BstF5I GGATG 1 cut(s) 352
BstFNI CGCG 4 cut(s) 43, 45, 50, 114
BstHHI GCGC 6 cut(s) 32, 45, 47, 114, 116, 190
BstKTI GATC 2 cut(s) 130, 480
BstMBI GATC 2 cut(s) 127, 477
BstMWI GCNNNNNNNGC 6 cut(s) 71, 74, 80, 118, 250, 356
BstUI CGCG 4 cut(s) 43, 45, 50, 114
BstV1I GCAGC 3 cut(s) 103, 106, 608
BstV2I GAAGAC 1 cut(s) 240
BstX2I RGATCY 1 cut(s) 127
BstYI RGATCY 1 cut(s) 127
BsuI GTATCC 1 cut(s) 581
BsuRI GGCC 5 cut(s) 20, 77, 83, 161, 253
BtgI CCRYGG 1 cut(s) 48
BtsCI GGATG 1 cut(s) 352
BtsIMutI CAGTG 1 cut(s) 12
Cac8I GCNNGC 3 cut(s) 45, 99, 114
CaiI CAGNNNCTG 1 cut(s) 97
CciI TCATGA 1 cut(s) 628
CfoI GCGC 6 cut(s) 32, 45, 47, 114, 116, 190
Cfr13I GGNCC 1 cut(s) 251
Cfr42I CCGCGG 1 cut(s) 51
Csp6I GTAC 2 cut(s) 637, 682
CviAII CATG 4 cut(s) 328, 629, 692, 765
CviQI GTAC 2 cut(s) 637, 682
DdeI CTNAG 1 cut(s) 105
DpnI GATC 2 cut(s) 129, 479
DpnII GATC 2 cut(s) 127, 477
DraI TTTAAA 1 cut(s) 412
EaeI YGGCCR 2 cut(s) 18, 81
Eam1104I CTCTTC 3 cut(s) 50, 435, 643
EarI CTCTTC 3 cut(s) 50, 435, 643
Eco130I CCWWGG 2 cut(s) 78, 557
Eco32I GATATC 1 cut(s) 268
Eco57I CTGAAG 1 cut(s) 479
EcoRI GAATTC 1 cut(s) 336
EcoRV GATATC 1 cut(s) 268
EcoT14I CCWWGG 2 cut(s) 78, 557
ErhI CCWWGG 2 cut(s) 78, 557
FaeI CATG 4 cut(s) 331, 632, 695, 768
FatI CATG 4 cut(s) 327, 628, 691, 764
FbaI TGATCA 1 cut(s) 477
Fnu4HI GCNGC 9 cut(s) 48, 51, 66, 69, 72, 75, 92, 95, 597
FokI GGATG 1 cut(s) 359
Fsp4HI GCNGC 9 cut(s) 48, 51, 66, 69, 72, 75, 92, 95, 597
GlaI GCGC 6 cut(s) 31, 44, 46, 113, 115, 189
GluI GCNGC 9 cut(s) 48, 51, 66, 69, 72, 75, 92, 95, 597
GsuI CTGGAG 1 cut(s) 711
HaeIII GGCC 5 cut(s) 20, 77, 83, 161, 253
HhaI GCGC 6 cut(s) 32, 45, 47, 114, 116, 190
Hin1II CATG 4 cut(s) 331, 632, 695, 768
Hin6I GCGC 6 cut(s) 30, 43, 45, 112, 114, 188
HinP1I GCGC 6 cut(s) 30, 43, 45, 112, 114, 188
HindIII AAGCTT 1 cut(s) 491
HinfI GANTC 3 cut(s) 182, 373, 553
HphI GGTGA 1 cut(s) 124
Hpy166II GTNNAC 1 cut(s) 12
Hpy188I TCNGA 5 cut(s) 36, 125, 181, 265, 342
Hpy188III TCNNGA 3 cut(s) 422, 629, 728
Hpy8I GTNNAC 1 cut(s) 12
Hpy99I CGWCG 2 cut(s) 152, 155
HpyAV CCTTC 3 cut(s) 337, 725, 754
HpyCH4III ACNGT 1 cut(s) 16
HpyCH4IV ACGT 2 cut(s) 147, 223
HpyCH4V TGCA 4 cut(s) 143, 401, 574, 596
HpyF10VI GCNNNNNNNGC 6 cut(s) 71, 74, 80, 118, 250, 356
HpyF3I CTNAG 1 cut(s) 105
HpySE526I ACGT 2 cut(s) 147, 223
Hsp92II CATG 4 cut(s) 331, 632, 695, 768
HspAI GCGC 6 cut(s) 30, 43, 45, 112, 114, 188
Ksp22I TGATCA 1 cut(s) 477
KspI CCGCGG 1 cut(s) 51
Kzo9I GATC 2 cut(s) 127, 477
LmnI GCTCC 3 cut(s) 37, 88, 745
LpnPI CCDG 8 cut(s) 83, 203, 333, 435, 570, 733, 741, 750
Lsp1109I GCAGC 3 cut(s) 103, 106, 608
LweI GCATC 1 cut(s) 337
MaeII ACGT 2 cut(s) 147, 223
MaeIII GTNAC 2 cut(s) 224, 660
MalI GATC 2 cut(s) 129, 479
MboI GATC 2 cut(s) 127, 477
MboII GAAGA 7 cut(s) 67, 245, 272, 410, 422, 617, 660
MflI RGATCY 1 cut(s) 127
MhlI GDGCHC 1 cut(s) 123
MluCI AATT 3 cut(s) 175, 336, 407
MseI TTAA 3 cut(s) 354, 411, 533
MspA1I CMGCKG 3 cut(s) 50, 97, 599
MvnI CGCG 4 cut(s) 43, 45, 50, 114
MwoI GCNNNNNNNGC 6 cut(s) 71, 74, 80, 118, 250, 356
NdeII GATC 2 cut(s) 127, 477
NlaIII CATG 4 cut(s) 331, 632, 695, 768
NlaIV GGNNCC 1 cut(s) 300
NmeAIII GCCGAG 2 cut(s) 46, 109
NmuCI GTSAC 1 cut(s) 224
PagI TCATGA 1 cut(s) 628
PauI GCGCGC 2 cut(s) 43, 112
PfeI GAWTC 3 cut(s) 182, 373, 553
PkrI GCNGC 9 cut(s) 49, 52, 67, 70, 73, 76, 93, 96, 598
PshBI ATTAAT 2 cut(s) 354, 533
PspN4I GGNNCC 1 cut(s) 300
PspPI GGNCC 1 cut(s) 251
PstNI CAGNNNCTG 1 cut(s) 97
PsuI RGATCY 1 cut(s) 127
PteI GCGCGC 2 cut(s) 43, 112
PvuII CAGCTG 2 cut(s) 97, 599
RsaI GTAC 2 cut(s) 638, 683
RsaNI GTAC 2 cut(s) 637, 682
SacII CCGCGG 1 cut(s) 51
SaqAI TTAA 3 cut(s) 354, 411, 533
SatI GCNGC 9 cut(s) 48, 51, 66, 69, 72, 75, 92, 95, 597
Sau3AI GATC 2 cut(s) 127, 477
Sau96I GGNCC 1 cut(s) 251
SduI GDGCHC 1 cut(s) 123
SfaNI GCATC 1 cut(s) 337
Sfr303I CCGCGG 1 cut(s) 51
SgrBI CCGCGG 1 cut(s) 51
Sse9I AATT 3 cut(s) 175, 336, 407
SsiI CCGC 6 cut(s) 48, 50, 65, 68, 71, 74
SspI AATATT 1 cut(s) 461
StyI CCWWGG 2 cut(s) 78, 557
TaaI ACNGT 1 cut(s) 16
TaiI ACGT 2 cut(s) 150, 226
TaqI TCGA 1 cut(s) 467
TasI AATT 3 cut(s) 175, 336, 407
TatI WGTACW 2 cut(s) 636, 681
TauI GCSGC 6 cut(s) 50, 53, 68, 71, 74, 77
TfiI GAWTC 3 cut(s) 182, 373, 553
Tru1I TTAA 3 cut(s) 354, 411, 533
Tru9I TTAA 3 cut(s) 354, 411, 533
TscAI CASTG 1 cut(s) 19
TseFI GTSAC 1 cut(s) 224
TseI GCWGC 3 cut(s) 91, 94, 596
Tsp45I GTSAC 1 cut(s) 224
TspDTI ATGAA 7 cut(s) 246, 420, 422, 485, 511, 566, 617
TspGWI ACGGA 1 cut(s) 220
TspRI CASTG 1 cut(s) 19
VspI ATTAAT 2 cut(s) 354, 533
XapI RAATTY 2 cut(s) 336, 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.