Rh6CG495900

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000541
Physical Location & Seq
Reverse (-)
66143979 .. 66148576
4598 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG495900.1

Sequence Viewer

Length: 1245 bp
ATGGCTTCTTTCACTGTGGCCGAGAAATGCGCTCCGATTACGCGCGCCGCGGCGAAGAGGAGGGCGGCGGCGGCGGCCTTGGCCGAGGAGCAGCAGCTGGCGACTAAGAAGCGCGCCGTGCTCGGAGATCTCACCAACTTTGCAAACGTCGTCGTTTTGGCCTCAAAAAACCCCAATTCCGATTCTGCGCTAAAGAAACCCAAACGGAGAGCTGTGCTGGAACGTGACAATGAAGACCCACAGCTTTGTGGGCCTTATGCTTCTGATATCTATGCCTATCTTCGCAGAATGGAGGTGGAACCAAAAAGGAGGTCATTGCCTGATTACATGGAGAGAATTCAGAAGGATGCTATTAATGCTAATATGAGAGGGATTCTTGTGGATTGGTTGGTGGAGGTTGCAGATGAATTTAAACTTCTTCCAGACACTCTTCATCTATCTGTTTCCTATGTTGATAAATATTTGTCGATGAATGTGATCAATAAGCAGAAGCTTCAGCTATTGGGAGTTGCTTCAATGTTCATTGCCTCAAAGTATGAGGAGATTAATCCTCCACATGTGGATGAACTTAGTGACATGACAGAAAATACATACAGTAAAGCAGAGGTGATCAAGATGGAGGCTGATATCCTCAAATCCCTCAAATTTGAAATGGGGAATCCTACTGTTTGGACCTTCTTAAGAAAGTTTACGGATGTTGCTCAAGGGAATTATACAGTAACCTCTCTCTCTATCTCTCCTGAATGCACATGTGAATTAGCCAAGTTGTTAATCTTTGATATTGACTGCTTGTCTGTTTTGTGTTGTCTACAGACTCCCAATTTGCAGTTTGAGTTCTTGGTTTCCTACCTTGCAGAGTTAAGCTTGTTGGATTACAAATGTGTGAAATTCCTGCCTTCTATGGTAGCTTCATCAGTTGTTTTCCTTGCAAGATTAATGATTAGATCAAAGATGAATCCTTGGGTAAGAGTTTTGAAATTATACATGCTGATCTTATCTCTGAGTATGAAGGCAATCACTTTACTGTATTTATTTCAGTGTTCAACTTTGCAACAATATACTGGATACATTGCAGCTGATTTGAAAGATTGTGTTCTTGTCCTTCATGACTTGTACTTGGGTAGAAGAGGAGGATTGTTACAAGTTGTGCGAGAGAAGTACAGACAGCATGAGTTCAAATATGTGGCAAACCTTCCCTGCCCTCCAGAGCTACCAGCTCCTTTGTTTGATAATGTGAAGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

414

Amino Acids

46.89

Weight (kDa)

8.49

Isoelectric Point (pI)

41.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 89 - 218 2.7e-42 Cyclin, N-terminal domain
Cyclin_C PF02984 274 - 329 5.9e-13 Cyclin, C-terminal domain
Cyclin_C PF02984 335 - 400 4.5e-09 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000541)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47210 AT1G47210 AT1G47220 AT1G47230 AT1G47230 AT2G01310 AT5G43080 AT5G43080
fragaria_vesca FvH4_2g04770 FvH4_2g04770 FvH4_2g04770 FvH4_2g33510 FvH4_2g33510 FvH4_2g33510 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33530 FvH4_2g33530
malus_domestica MD05G1092000.v1.1 MD08G1091000.v1.1 MD08G1091200.v1.1 MD10G1100200.v1.1 MD10G1100700.v1.1 MD12G1105600.v1.1 MD15G1075100.v1.1 MD15G1075200.v1.1
prunus_persica Prupe.1G428000_v2.0.a1 Prupe.1G428100_v2.0.a1 Prupe.4G285800_v2.0.a1 Prupe.8G137700_v2.0.a1 Prupe.8G137700_v2.0.a1
pyrus_communis pycom05g09170 pycom08g07360 pycom08g07370 pycom15g07000 pycom15g07020
rosa_chinensis RchiOBHm_Chr3g0465621 RchiOBHm_Chr6g0254421 RchiOBHm_Chr6g0254451 RchiOBHm_Chr6g0308961 RchiOBHm_Chr6g0308971 RchiOBHm_Chr6g0308991 RchiOBHm_Chr7g0190851
rosa_laevigata RLG00000003915 RLG00000010598 RLG00000010599 RLG00000010600 RLG00000014913
rosa_multiflora Rmu_sc0009578.1_g000002 Rmu_sc0009578.1_g000003 Rmu_sc0029942.1_g000001 Rmu_sc0036151.1_g000001 Rmu_sc0036151.1_g000002 Rmu_sc0037719.1_g000001 Rmu_sc0042877.1_g000001 Rmu_ssc0000481.1_g000003
rosa_roxburghii Rroxscaffold_7G00159740 Rroxscaffold_7G00159750 Rroxscaffold_7G00159760 Rroxscaffold_7G00159770 Rroxscaffold_7G00210810
rosa_rugosa Rorug05G0552200 Rorug05G0552300 Rorug05G0552400
rosa_samantha Rh3CG081000 Rh6AG069300 Rh6AG481300 Rh6AG481600 Rh6BG062000 Rh6BG490400 Rh6BG490500 Rh6BG490600 Rh6CG062100 Rh6CG495700 Rh6CG495900 Rh6DG059100 Rh6DG481600 Rh6DG481700 Rh6DG481800
rosa_wichuraiana Rw6G006090 Rw6G041930 Rw6G041940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 808
AccII CGCG 4 cut(s) 43, 45, 50, 114
AciI CCGC 6 cut(s) 48, 50, 65, 68, 71, 74
AcoI YGGCCR 2 cut(s) 18, 81
AcsI RAATTY 4 cut(s) 336, 407, 644, 887
AcuI CTGAAG 1 cut(s) 479
AfaI GTAC 2 cut(s) 1115, 1160
AflII CTTAAG 1 cut(s) 679
AflIII ACRYGT 2 cut(s) 556, 749
AgsI TTSAA 6 cut(s) 516, 650, 976, 1044, 1084, 1177
AhdI GACNNNNNGTC 1 cut(s) 790
Alw21I GWGCWC 1 cut(s) 123
AlwNI CAGNNNCTG 1 cut(s) 97
AoxI GGCC 5 cut(s) 18, 75, 81, 159, 251
ApeKI GCWGC 3 cut(s) 91, 94, 1073
ApoI RAATTY 4 cut(s) 336, 407, 644, 887
ArsI GACNNNNNNTTYG 4 cut(s) 296, 328, 805, 837
AseI ATTAAT 3 cut(s) 354, 546, 935
AspLEI GCGC 6 cut(s) 32, 45, 47, 114, 116, 190
AspS9I GGNCC 2 cut(s) 251, 672
AsuHPI GGTGA 2 cut(s) 124, 619
AvaII GGWCC 1 cut(s) 672
BbsI GAAGAC 1 cut(s) 240
Bbv12I GWGCWC 1 cut(s) 123
BbvI GCAGC 3 cut(s) 103, 106, 1085
BccI CCATC 1 cut(s) 610
BceAI ACGGC 1 cut(s) 101
BciVI GTATCC 1 cut(s) 1058
BclI TGATCA 2 cut(s) 477, 609
BfmI CTRYAG 1 cut(s) 809
BfrI CTTAAG 1 cut(s) 679
BfuI GTATCC 1 cut(s) 1058
BglII AGATCT 1 cut(s) 127
BisI GCNGC 9 cut(s) 48, 51, 66, 69, 72, 75, 92, 95, 1074
BlsI GCNGC 9 cut(s) 49, 52, 67, 70, 73, 76, 93, 96, 1075
Bme18I GGWCC 1 cut(s) 672
BmeRI GACNNNNNGTC 1 cut(s) 790
BmgT120I GGNCC 2 cut(s) 251, 672
BmiI GGNNCC 1 cut(s) 300
BmsI GCATC 1 cut(s) 337
BpiI GAAGAC 1 cut(s) 240
BpmI CTGGAG 1 cut(s) 1188
BpuEI CTTGAG 1 cut(s) 687
BsaJI CCNNGG 4 cut(s) 48, 78, 84, 959
Bse1I ACTGG 1 cut(s) 1066
Bse3DI GCAATG 3 cut(s) 314, 522, 1068
BseDI CCNNGG 4 cut(s) 48, 78, 84, 959
BseGI GGATG 3 cut(s) 352, 568, 700
BseMI GCAATG 3 cut(s) 314, 522, 1068
BseMII CTCAG 1 cut(s) 992
BseNI ACTGG 1 cut(s) 1066
BsePI GCGCGC 2 cut(s) 43, 112
BseRI GAGGAG 4 cut(s) 73, 101, 554, 1143
BseXI GCAGC 3 cut(s) 103, 106, 1085
Bsh1236I CGCG 4 cut(s) 43, 45, 50, 114
BshFI GGCC 5 cut(s) 20, 77, 83, 161, 253
BsiHKAI GWGCWC 1 cut(s) 123
BsmI GAATGC 1 cut(s) 749
BsnI GGCC 5 cut(s) 20, 77, 83, 161, 253
Bsp1286I GDGCHC 1 cut(s) 123
Bsp143I GATC 5 cut(s) 127, 477, 609, 944, 990
BspACI CCGC 6 cut(s) 48, 50, 65, 68, 71, 74
BspANI GGCC 5 cut(s) 20, 77, 83, 161, 253
BspCNI CTCAG 1 cut(s) 993
BspFNI CGCG 4 cut(s) 43, 45, 50, 114
BspHI TCATGA 1 cut(s) 1105
BspLI GGNNCC 1 cut(s) 300
BspTI CTTAAG 1 cut(s) 679
BsrDI GCAATG 3 cut(s) 314, 522, 1068
BsrI ACTGG 1 cut(s) 1066
BssECI CCNNGG 4 cut(s) 48, 78, 84, 959
BssHII GCGCGC 2 cut(s) 43, 112
BssMI GATC 5 cut(s) 127, 477, 609, 944, 990
BssT1I CCWWGG 2 cut(s) 78, 959
Bst4CI ACNGT 5 cut(s) 16, 596, 667, 718, 1026
Bst6I CTCTTC 3 cut(s) 50, 435, 1120
BstAFI CTTAAG 1 cut(s) 679
BstC8I GCNNGC 3 cut(s) 45, 99, 114
BstDEI CTNAG 3 cut(s) 105, 569, 1001
BstDSI CCRYGG 1 cut(s) 48
BstF5I GGATG 3 cut(s) 352, 568, 700
BstFNI CGCG 4 cut(s) 43, 45, 50, 114
BstHHI GCGC 6 cut(s) 32, 45, 47, 114, 116, 190
BstKTI GATC 5 cut(s) 130, 480, 612, 947, 993
BstMBI GATC 5 cut(s) 127, 477, 609, 944, 990
BstMWI GCNNNNNNNGC 6 cut(s) 71, 74, 80, 118, 250, 356
BstNSI RCATGY 3 cut(s) 560, 753, 988
BstSFI CTRYAG 1 cut(s) 809
BstUI CGCG 4 cut(s) 43, 45, 50, 114
BstV1I GCAGC 3 cut(s) 103, 106, 1085
BstV2I GAAGAC 1 cut(s) 240
BstX2I RGATCY 1 cut(s) 127
BstYI RGATCY 1 cut(s) 127
BsuI GTATCC 1 cut(s) 1058
BsuRI GGCC 5 cut(s) 20, 77, 83, 161, 253
BtgI CCRYGG 1 cut(s) 48
BtsCI GGATG 3 cut(s) 352, 568, 700
BtsIMutI CAGTG 2 cut(s) 12, 1043
Cac8I GCNNGC 3 cut(s) 45, 99, 114
CaiI CAGNNNCTG 1 cut(s) 97
CciI TCATGA 1 cut(s) 1105
CfoI GCGC 6 cut(s) 32, 45, 47, 114, 116, 190
Cfr13I GGNCC 2 cut(s) 251, 672
Cfr42I CCGCGG 1 cut(s) 51
Csp6I GTAC 2 cut(s) 1114, 1159
CviAII CATG 8 cut(s) 328, 557, 577, 750, 985, 1106, 1169, 1242
CviQI GTAC 2 cut(s) 1114, 1159
DdeI CTNAG 3 cut(s) 105, 569, 1001
DpnI GATC 5 cut(s) 129, 479, 611, 946, 992
DpnII GATC 5 cut(s) 127, 477, 609, 944, 990
DraI TTTAAA 1 cut(s) 412
DriI GACNNNNNGTC 1 cut(s) 790
EaeI YGGCCR 2 cut(s) 18, 81
Eam1104I CTCTTC 3 cut(s) 50, 435, 1120
Eam1105I GACNNNNNGTC 1 cut(s) 790
EarI CTCTTC 3 cut(s) 50, 435, 1120
Eco130I CCWWGG 2 cut(s) 78, 959
Eco32I GATATC 2 cut(s) 268, 628
Eco47I GGWCC 1 cut(s) 672
Eco57I CTGAAG 1 cut(s) 479
EcoRI GAATTC 1 cut(s) 336
EcoRV GATATC 2 cut(s) 268, 628
EcoT14I CCWWGG 2 cut(s) 78, 959
ErhI CCWWGG 2 cut(s) 78, 959
FaeI CATG 8 cut(s) 331, 560, 580, 753, 988, 1109, 1172, 1245
FatI CATG 8 cut(s) 327, 556, 576, 749, 984, 1105, 1168, 1241
FbaI TGATCA 2 cut(s) 477, 609
FblI GTMKAC 1 cut(s) 808
Fnu4HI GCNGC 9 cut(s) 48, 51, 66, 69, 72, 75, 92, 95, 1074
FokI GGATG 3 cut(s) 359, 575, 707
Fsp4HI GCNGC 9 cut(s) 48, 51, 66, 69, 72, 75, 92, 95, 1074
GlaI GCGC 6 cut(s) 31, 44, 46, 113, 115, 189
GluI GCNGC 9 cut(s) 48, 51, 66, 69, 72, 75, 92, 95, 1074
GsuI CTGGAG 1 cut(s) 1188
HaeIII GGCC 5 cut(s) 20, 77, 83, 161, 253
HhaI GCGC 6 cut(s) 32, 45, 47, 114, 116, 190
Hin1II CATG 8 cut(s) 331, 560, 580, 753, 988, 1109, 1172, 1245
Hin6I GCGC 6 cut(s) 30, 43, 45, 112, 114, 188
HinP1I GCGC 6 cut(s) 30, 43, 45, 112, 114, 188
HindIII AAGCTT 2 cut(s) 491, 862
HinfI GANTC 5 cut(s) 182, 373, 658, 814, 955
HphI GGTGA 2 cut(s) 124, 619
Hpy166II GTNNAC 2 cut(s) 690, 809
Hpy188I TCNGA 6 cut(s) 36, 125, 181, 265, 342, 1002
Hpy188III TCNNGA 5 cut(s) 422, 613, 740, 1106, 1205
Hpy8I GTNNAC 2 cut(s) 690, 809
Hpy99I CGWCG 2 cut(s) 152, 155
HpyAV CCTTC 7 cut(s) 337, 685, 906, 1003, 1112, 1202, 1231
HpyCH4III ACNGT 5 cut(s) 16, 596, 667, 718, 1026
HpyCH4IV ACGT 2 cut(s) 147, 223
HpyCH4V TGCA 8 cut(s) 143, 401, 747, 826, 854, 929, 1051, 1073
HpyF10VI GCNNNNNNNGC 6 cut(s) 71, 74, 80, 118, 250, 356
HpyF3I CTNAG 3 cut(s) 105, 569, 1001
HpySE526I ACGT 2 cut(s) 147, 223
Hsp92II CATG 8 cut(s) 331, 560, 580, 753, 988, 1109, 1172, 1245
HspAI GCGC 6 cut(s) 30, 43, 45, 112, 114, 188
Ksp22I TGATCA 2 cut(s) 477, 609
KspI CCGCGG 1 cut(s) 51
Kzo9I GATC 5 cut(s) 127, 477, 609, 944, 990
LmnI GCTCC 3 cut(s) 37, 88, 1222
Lsp1109I GCAGC 3 cut(s) 103, 106, 1085
LweI GCATC 1 cut(s) 337
MaeII ACGT 2 cut(s) 147, 223
MaeIII GTNAC 4 cut(s) 224, 572, 718, 1137
MalI GATC 5 cut(s) 129, 479, 611, 946, 992
MboI GATC 5 cut(s) 127, 477, 609, 944, 990
MboII GAAGA 6 cut(s) 67, 245, 272, 410, 422, 1137
MflI RGATCY 1 cut(s) 127
MhlI GDGCHC 1 cut(s) 123
MluCI AATT 9 cut(s) 175, 336, 407, 644, 709, 755, 820, 887, 977
MlyI GAGTC 1 cut(s) 808
MmeI TCCRAC 1 cut(s) 849
MseI TTAA 7 cut(s) 354, 411, 546, 680, 770, 860, 935
MslI CAYNNNNRTG 1 cut(s) 561
MspA1I CMGCKG 3 cut(s) 50, 97, 1076
MspCI CTTAAG 1 cut(s) 679
Mva1269I GAATGC 1 cut(s) 749
MvnI CGCG 4 cut(s) 43, 45, 50, 114
MwoI GCNNNNNNNGC 6 cut(s) 71, 74, 80, 118, 250, 356
NdeII GATC 5 cut(s) 127, 477, 609, 944, 990
NlaIII CATG 8 cut(s) 331, 560, 580, 753, 988, 1109, 1172, 1245
NlaIV GGNNCC 1 cut(s) 300
NmeAIII GCCGAG 2 cut(s) 46, 109
NmuCI GTSAC 2 cut(s) 224, 572
NspI RCATGY 3 cut(s) 560, 753, 988
PagI TCATGA 1 cut(s) 1105
PauI GCGCGC 2 cut(s) 43, 112
PciI ACATGT 2 cut(s) 556, 749
PctI GAATGC 1 cut(s) 749
PfeI GAWTC 4 cut(s) 182, 373, 658, 955
PkrI GCNGC 9 cut(s) 49, 52, 67, 70, 73, 76, 93, 96, 1075
PleI GAGTC 1 cut(s) 808
PpsI GAGTC 1 cut(s) 808
PscI ACATGT 2 cut(s) 556, 749
PshBI ATTAAT 3 cut(s) 354, 546, 935
PspN4I GGNNCC 1 cut(s) 300
PspPI GGNCC 2 cut(s) 251, 672
PstNI CAGNNNCTG 1 cut(s) 97
PsuI RGATCY 1 cut(s) 127
PteI GCGCGC 2 cut(s) 43, 112
PvuII CAGCTG 2 cut(s) 97, 1076
RsaI GTAC 2 cut(s) 1115, 1160
RsaNI GTAC 2 cut(s) 1114, 1159
RseI CAYNNNNRTG 1 cut(s) 561
SacII CCGCGG 1 cut(s) 51
SaqAI TTAA 7 cut(s) 354, 411, 546, 680, 770, 860, 935
SatI GCNGC 9 cut(s) 48, 51, 66, 69, 72, 75, 92, 95, 1074
Sau3AI GATC 5 cut(s) 127, 477, 609, 944, 990
Sau96I GGNCC 2 cut(s) 251, 672
SchI GAGTC 1 cut(s) 808
SduI GDGCHC 1 cut(s) 123
SfaNI GCATC 1 cut(s) 337
SfcI CTRYAG 1 cut(s) 809
Sfr303I CCGCGG 1 cut(s) 51
SgrBI CCGCGG 1 cut(s) 51
SinI GGWCC 1 cut(s) 672
SmiMI CAYNNNNRTG 1 cut(s) 561
SmlI CTYRAG 2 cut(s) 679, 702
SmoI CTYRAG 2 cut(s) 679, 702
Sse9I AATT 9 cut(s) 175, 336, 407, 644, 709, 755, 820, 887, 977
SsiI CCGC 6 cut(s) 48, 50, 65, 68, 71, 74
SspI AATATT 1 cut(s) 461
StyI CCWWGG 2 cut(s) 78, 959
TaaI ACNGT 5 cut(s) 16, 596, 667, 718, 1026
TaiI ACGT 2 cut(s) 150, 226
TaqI TCGA 1 cut(s) 467
TasI AATT 9 cut(s) 175, 336, 407, 644, 709, 755, 820, 887, 977
TatI WGTACW 2 cut(s) 1113, 1158
TauI GCSGC 6 cut(s) 50, 53, 68, 71, 74, 77
TfiI GAWTC 4 cut(s) 182, 373, 658, 955
Tru1I TTAA 7 cut(s) 354, 411, 546, 680, 770, 860, 935
Tru9I TTAA 7 cut(s) 354, 411, 546, 680, 770, 860, 935
TscAI CASTG 2 cut(s) 19, 1043
TseFI GTSAC 2 cut(s) 224, 572
TseI GCWGC 3 cut(s) 91, 94, 1073
Tsp45I GTSAC 2 cut(s) 224, 572
TspGWI ACGGA 2 cut(s) 220, 707
TspRI CASTG 2 cut(s) 19, 1043
Vha464I CTTAAG 1 cut(s) 679
VpaK11BI GGWCC 1 cut(s) 672
VspI ATTAAT 3 cut(s) 354, 546, 935
XapI RAATTY 4 cut(s) 336, 407, 644, 887
XceI RCATGY 3 cut(s) 560, 753, 988
XmiI GTMKAC 1 cut(s) 808
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.