Rh6BG062000

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000541
Physical Location & Seq
Forward (+)
9787047 .. 9788803
1757 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG062000.1

Sequence Viewer

Length: 909 bp
ATGTGCGACGAAGGAAACAGCGTCTACACCACGCGCTCGACGAAGAAGCGAGCCTCGGCGGCGGAGGCCCTGAAAGTTCCGGCGTCCAAGAAGCAGCGATCCGTACTGGGAGAGATCACCAACTCGTCGGATCTCGTTTCGGTTCCGAAATCGGCACCGAAGAAACCGAAAATTGAGTCGCAGAAGGAGAAGAAGAAGGAAGAGGAGGAGGGACTCGAGACGGAGATTGGTGTGAGCTCGATTGATCCGGTCAAATGTGCTTACTCGCCTTCTATGTATAAGCATCTTCATAAATTGGAGGTGGAGGTGAAGAATAGACCATTATGTGGTTACATGGAGAAGGTGCAGAATTGTATTTCAGAACACATGCGAGAAGTCCTGGTGGATTGGTTGGTGGAGGTTGCGGAGGAATACAAGTTTGTTTCAGACACCCTTTATCTTACCGTATCATATATCGACAGATACCTTTCTTCACACCTTATCAGCAAGAACAAGCTACAGCTTCTTGGTGTTGCGTGCATGTTTATTGCCTCGAAGTACGAAGAGATTTGTCCTCCACGTATTGAAGAGTTCTGCTATATAACAGATAATTCCTACATGATAGAAGAGGTGTTGGAAATGGAGAAAGATGTACTCAAATTCTTGAACTTTGAGATCTATACTCCCACAACAAAGAGTTTTCTCAGAATCTTCGCAAGAGCTGCTCAAGAGAATTCCAAATCTTTGGGTCTGCAGTTTGAATTCTTGGGTGGTTATCTTGCGGAACTAAGTTTGCTTGACTACTGCTGTGTTCGATTCCTACCATCAGTTATTGCTGCATCGGCGGTTTTTCTTACAAGGTTCACAATCCAGCCTGAGGTTCATCCCTGGGTAAGAAGCAATGTAGCGGACTTGGTATTTGTGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

302

Amino Acids

34.43

Weight (kDa)

5.73

Isoelectric Point (pI)

47.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 92 - 219 3.4e-45 Cyclin, N-terminal domain
Cyclin_C PF02984 222 - 290 6.2e-16 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000541)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47210 AT1G47210 AT1G47220 AT1G47230 AT1G47230 AT2G01310 AT5G43080 AT5G43080
fragaria_vesca FvH4_2g04770 FvH4_2g04770 FvH4_2g04770 FvH4_2g33510 FvH4_2g33510 FvH4_2g33510 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33530 FvH4_2g33530
malus_domestica MD05G1092000.v1.1 MD08G1091000.v1.1 MD08G1091200.v1.1 MD10G1100200.v1.1 MD10G1100700.v1.1 MD12G1105600.v1.1 MD15G1075100.v1.1 MD15G1075200.v1.1
prunus_persica Prupe.1G428000_v2.0.a1 Prupe.1G428100_v2.0.a1 Prupe.4G285800_v2.0.a1 Prupe.8G137700_v2.0.a1 Prupe.8G137700_v2.0.a1
pyrus_communis pycom05g09170 pycom08g07360 pycom08g07370 pycom15g07000 pycom15g07020
rosa_chinensis RchiOBHm_Chr3g0465621 RchiOBHm_Chr6g0254421 RchiOBHm_Chr6g0254451 RchiOBHm_Chr6g0308961 RchiOBHm_Chr6g0308971 RchiOBHm_Chr6g0308991 RchiOBHm_Chr7g0190851
rosa_laevigata RLG00000003915 RLG00000010598 RLG00000010599 RLG00000010600 RLG00000014913
rosa_multiflora Rmu_sc0009578.1_g000002 Rmu_sc0009578.1_g000003 Rmu_sc0029942.1_g000001 Rmu_sc0036151.1_g000001 Rmu_sc0036151.1_g000002 Rmu_sc0037719.1_g000001 Rmu_sc0042877.1_g000001 Rmu_ssc0000481.1_g000003
rosa_roxburghii Rroxscaffold_7G00159740 Rroxscaffold_7G00159750 Rroxscaffold_7G00159760 Rroxscaffold_7G00159770 Rroxscaffold_7G00210810
rosa_rugosa Rorug05G0552200 Rorug05G0552300 Rorug05G0552400
rosa_samantha Rh3CG081000 Rh6AG069300 Rh6AG481300 Rh6AG481600 Rh6BG062000 Rh6BG490400 Rh6BG490500 Rh6BG490600 Rh6CG062100 Rh6CG495700 Rh6CG495900 Rh6DG059100 Rh6DG481600 Rh6DG481700 Rh6DG481800
rosa_wichuraiana Rw6G006090 Rw6G041930 Rw6G041940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 154
AccB7I CCANNNNNTGG 1 cut(s) 326
AccI GTMKAC 1 cut(s) 24
AccII CGCG 1 cut(s) 34
AciI CCGC 6 cut(s) 59, 62, 404, 761, 824, 887
AclWI GGATC 3 cut(s) 93, 138, 239
AcsI RAATTY 3 cut(s) 638, 712, 740
AcyI GRCGYC 1 cut(s) 83
AfaI GTAC 3 cut(s) 105, 539, 633
AfiI CCNNNNNNNGG 2 cut(s) 326, 856
AgsI TTSAA 3 cut(s) 566, 646, 740
AjnI CCWGG 2 cut(s) 378, 866
AluBI AGCT 4 cut(s) 237, 496, 502, 701
AluI AGCT 4 cut(s) 237, 496, 502, 701
Alw21I GWGCWC 1 cut(s) 239
Alw26I GTCTC 1 cut(s) 212
AlwI GGATC 3 cut(s) 93, 138, 239
Ama87I CYCGRG 1 cut(s) 215
AoxI GGCC 1 cut(s) 66
ApeKI GCWGC 3 cut(s) 94, 701, 815
ApoI RAATTY 3 cut(s) 638, 712, 740
ArsI GACNNNNNNTTYG 3 cut(s) 161, 193, 881
AspLEI GCGC 1 cut(s) 36
AspS9I GGNCC 1 cut(s) 67
AsuHPI GGTGA 2 cut(s) 109, 319
AvaI CYCGRG 1 cut(s) 215
AxyI CCTNAGG 1 cut(s) 855
BanI GGYRCC 1 cut(s) 154
BanII GRGCYC 1 cut(s) 239
Bbv12I GWGCWC 1 cut(s) 239
BbvI GCAGC 3 cut(s) 106, 688, 802
BccI CCATC 1 cut(s) 811
BciT130I CCWGG 2 cut(s) 380, 868
BcoDI GTCTC 1 cut(s) 212
BfmI CTRYAG 2 cut(s) 497, 731
BglI GCCNNNNNGGC 1 cut(s) 59
BglII AGATCT 1 cut(s) 654
BisI GCNGC 4 cut(s) 60, 95, 702, 816
BlsI GCNGC 4 cut(s) 61, 96, 703, 817
Bme1390I CCNGG 2 cut(s) 380, 868
BmeT110I CYCGRG 1 cut(s) 215
BmgT120I GGNCC 1 cut(s) 67
BmiI GGNNCC 2 cut(s) 144, 156
BmrFI CCNGG 2 cut(s) 380, 868
BmrI ACTGGG 1 cut(s) 116
BmsI GCATC 2 cut(s) 292, 827
BmuI ACTGGG 1 cut(s) 116
BpuEI CTTGAG 1 cut(s) 690
BsaAI YACGTR 1 cut(s) 560
BsaHI GRCGYC 1 cut(s) 83
BsaJI CCNNGG 3 cut(s) 54, 866, 867
BsaWI WCCGGW 1 cut(s) 247
Bsc4I CCNNNNNNNGG 2 cut(s) 326, 856
Bse1I ACTGG 1 cut(s) 111
Bse21I CCTNAGG 1 cut(s) 855
Bse3DI GCAATG 1 cut(s) 886
BseBI CCWGG 2 cut(s) 380, 868
BseDI CCNNGG 3 cut(s) 54, 866, 867
BseGI GGATG 1 cut(s) 862
BseLI CCNNNNNNNGG 2 cut(s) 326, 856
BseMI GCAATG 1 cut(s) 886
BseMII CTCAG 2 cut(s) 697, 846
BseNI ACTGG 1 cut(s) 111
BseRI GAGGAG 2 cut(s) 218, 221
BseXI GCAGC 3 cut(s) 106, 688, 802
BsgI GTGCAG 1 cut(s) 365
Bsh1236I CGCG 1 cut(s) 34
BshFI GGCC 1 cut(s) 68
BshNI GGYRCC 1 cut(s) 154
BsiHKAI GWGCWC 1 cut(s) 239
BsiHKCI CYCGRG 1 cut(s) 215
BsiSI CCGG 2 cut(s) 80, 248
BslFI GGGAC 1 cut(s) 225
BslI CCNNNNNNNGG 2 cut(s) 326, 856
BsmAI GTCTC 1 cut(s) 212
BsmBI CGTCTC 1 cut(s) 212
BsmFI GGGAC 1 cut(s) 225
BsnI GGCC 1 cut(s) 68
BsoBI CYCGRG 1 cut(s) 215
Bsp1286I GDGCHC 1 cut(s) 239
Bsp143I GATC 5 cut(s) 98, 114, 130, 244, 654
BspACI CCGC 6 cut(s) 59, 62, 404, 761, 824, 887
BspANI GGCC 1 cut(s) 68
BspCNI CTCAG 2 cut(s) 696, 847
BspFNI CGCG 1 cut(s) 34
BspLI GGNNCC 2 cut(s) 144, 156
BspMAI CTGCAG 1 cut(s) 735
BspPI GGATC 3 cut(s) 93, 138, 239
BspT107I GGYRCC 1 cut(s) 154
BsrDI GCAATG 1 cut(s) 886
BsrI ACTGG 1 cut(s) 111
BssECI CCNNGG 3 cut(s) 54, 866, 867
BssMI GATC 5 cut(s) 98, 114, 130, 244, 654
BssNI GRCGYC 1 cut(s) 83
Bst2UI CCWGG 2 cut(s) 380, 868
Bst4CI ACNGT 1 cut(s) 445
Bst6I CTCTTC 4 cut(s) 195, 537, 561, 600
BstACI GRCGYC 1 cut(s) 83
BstAPI GCANNNNNTGC 1 cut(s) 701
BstBAI YACGTR 1 cut(s) 560
BstC8I GCNNGC 2 cut(s) 51, 517
BstDEI CTNAG 3 cut(s) 683, 767, 855
BstF5I GGATG 1 cut(s) 862
BstFNI CGCG 1 cut(s) 34
BstHHI GCGC 1 cut(s) 36
BstKTI GATC 5 cut(s) 101, 117, 133, 247, 657
BstMAI GTCTC 1 cut(s) 212
BstMBI GATC 5 cut(s) 98, 114, 130, 244, 654
BstMWI GCNNNNNNNGC 4 cut(s) 59, 65, 701, 821
BstNI CCWGG 2 cut(s) 380, 868
BstNSI RCATGY 2 cut(s) 370, 523
BstSCI CCNGG 2 cut(s) 378, 866
BstSFI CTRYAG 2 cut(s) 497, 731
BstUI CGCG 1 cut(s) 34
BstV1I GCAGC 3 cut(s) 106, 688, 802
BstX2I RGATCY 2 cut(s) 130, 654
BstXI CCANNNNNNTGG 1 cut(s) 724
BstYI RGATCY 2 cut(s) 130, 654
Bsu36I CCTNAGG 1 cut(s) 855
BsuRI GGCC 1 cut(s) 68
BtsCI GGATG 1 cut(s) 862
Cac8I GCNNGC 2 cut(s) 51, 517
CfoI GCGC 1 cut(s) 36
Cfr13I GGNCC 1 cut(s) 67
CseI GACGC 2 cut(s) 10, 72
Csp6I GTAC 3 cut(s) 104, 538, 632
CviAII CATG 4 cut(s) 334, 367, 520, 598
CviJI RGCY 7 cut(s) 53, 68, 237, 496, 502, 701, 853
CviKI_1 RGCY 7 cut(s) 53, 68, 237, 496, 502, 701, 853
CviQI GTAC 3 cut(s) 104, 538, 632
DdeI CTNAG 3 cut(s) 683, 767, 855
DpnI GATC 5 cut(s) 100, 116, 132, 246, 656
DpnII GATC 5 cut(s) 98, 114, 130, 244, 654
Eam1104I CTCTTC 4 cut(s) 195, 537, 561, 600
EarI CTCTTC 4 cut(s) 195, 537, 561, 600
EciI GGCGGA 1 cut(s) 77
Ecl136II GAGCTC 1 cut(s) 237
Eco24I GRGCYC 1 cut(s) 239
Eco53kI GAGCTC 1 cut(s) 237
Eco81I CCTNAGG 1 cut(s) 855
Eco88I CYCGRG 1 cut(s) 215
EcoICRI GAGCTC 1 cut(s) 237
EcoO109I RGGNCCY 1 cut(s) 67
EcoRI GAATTC 2 cut(s) 712, 740
EcoRII CCWGG 2 cut(s) 378, 866
EcoT38I GRGCYC 1 cut(s) 239
Esp3I CGTCTC 1 cut(s) 212
FaeI CATG 4 cut(s) 337, 370, 523, 601
FaqI GGGAC 1 cut(s) 225
FatI CATG 4 cut(s) 333, 366, 519, 597
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 4 cut(s) 60, 95, 702, 816
FokI GGATG 1 cut(s) 849
FriOI GRGCYC 1 cut(s) 239
Fsp4HI GCNGC 4 cut(s) 60, 95, 702, 816
GlaI GCGC 1 cut(s) 35
GluI GCNGC 4 cut(s) 60, 95, 702, 816
HaeIII GGCC 1 cut(s) 68
HapII CCGG 2 cut(s) 80, 248
HgaI GACGC 2 cut(s) 10, 72
HhaI GCGC 1 cut(s) 36
Hin1I GRCGYC 1 cut(s) 83
Hin1II CATG 4 cut(s) 337, 370, 523, 601
Hin6I GCGC 1 cut(s) 34
HinP1I GCGC 1 cut(s) 34
HinfI GANTC 4 cut(s) 176, 213, 687, 795
HpaII CCGG 2 cut(s) 80, 248
HphI GGTGA 2 cut(s) 109, 319
Hpy166II GTNNAC 3 cut(s) 25, 843, 904
Hpy188I TCNGA 5 cut(s) 130, 147, 361, 427, 686
Hpy188III TCNNGA 3 cut(s) 217, 643, 707
Hpy8I GTNNAC 3 cut(s) 25, 843, 904
Hpy99I CGWCG 3 cut(s) 11, 43, 130
HpyAV CCTTC 5 cut(s) 5, 178, 190, 279, 334
HpyCH4III ACNGT 1 cut(s) 445
HpyCH4IV ACGT 1 cut(s) 559
HpyCH4V TGCA 4 cut(s) 346, 519, 733, 818
HpyF10VI GCNNNNNNNGC 4 cut(s) 59, 65, 701, 821
HpyF3I CTNAG 3 cut(s) 683, 767, 855
HpySE526I ACGT 1 cut(s) 559
Hsp92I GRCGYC 1 cut(s) 83
Hsp92II CATG 4 cut(s) 337, 370, 523, 601
HspAI GCGC 1 cut(s) 34
Kzo9I GATC 5 cut(s) 98, 114, 130, 244, 654
Lsp1109I GCAGC 3 cut(s) 106, 688, 802
LweI GCATC 2 cut(s) 292, 827
MaeII ACGT 1 cut(s) 559
MaeIII GTNAC 1 cut(s) 329
MalI GATC 5 cut(s) 100, 116, 132, 246, 656
MboI GATC 5 cut(s) 98, 114, 130, 244, 654
MflI RGATCY 2 cut(s) 130, 654
MhlI GDGCHC 1 cut(s) 239
MluCI AATT 7 cut(s) 171, 293, 349, 589, 638, 712, 740
MlyI GAGTC 2 cut(s) 185, 207
MmeI TCCRAC 2 cut(s) 108, 594
MspI CCGG 2 cut(s) 80, 248
MspR9I CCNGG 2 cut(s) 380, 868
MvaI CCWGG 2 cut(s) 380, 868
MvnI CGCG 1 cut(s) 34
MwoI GCNNNNNNNGC 4 cut(s) 59, 65, 701, 821
NdeII GATC 5 cut(s) 98, 114, 130, 244, 654
NlaIII CATG 4 cut(s) 337, 370, 523, 601
NlaIV GGNNCC 2 cut(s) 144, 156
NmeAIII GCCGAG 1 cut(s) 35
NspI RCATGY 2 cut(s) 370, 523
PaeR7I CTCGAG 1 cut(s) 215
PasI CCCWGGG 1 cut(s) 867
PcsI WCGNNNNNNNCGW 1 cut(s) 38
PfeI GAWTC 2 cut(s) 687, 795
PflMI CCANNNNNTGG 1 cut(s) 326
PkrI GCNGC 4 cut(s) 61, 96, 703, 817
PleI GAGTC 2 cut(s) 184, 207
PpsI GAGTC 2 cut(s) 184, 207
Ppu21I YACGTR 1 cut(s) 560
Psp124BI GAGCTC 1 cut(s) 239
Psp6I CCWGG 2 cut(s) 378, 866
PspGI CCWGG 2 cut(s) 378, 866
PspN4I GGNNCC 2 cut(s) 144, 156
PspPI GGNCC 1 cut(s) 67
PstI CTGCAG 1 cut(s) 735
PsuI RGATCY 2 cut(s) 130, 654
RsaI GTAC 3 cut(s) 105, 539, 633
RsaNI GTAC 3 cut(s) 104, 538, 632
SacI GAGCTC 1 cut(s) 239
SatI GCNGC 4 cut(s) 60, 95, 702, 816
Sau3AI GATC 5 cut(s) 98, 114, 130, 244, 654
Sau96I GGNCC 1 cut(s) 67
SchI GAGTC 2 cut(s) 185, 207
ScrFI CCNGG 2 cut(s) 380, 868
SduI GDGCHC 1 cut(s) 239
SfaNI GCATC 2 cut(s) 292, 827
SfcI CTRYAG 2 cut(s) 497, 731
Sfr274I CTCGAG 1 cut(s) 215
SlaI CTCGAG 1 cut(s) 215
SmlI CTYRAG 2 cut(s) 215, 705
SmoI CTYRAG 2 cut(s) 215, 705
Sse9I AATT 7 cut(s) 171, 293, 349, 589, 638, 712, 740
SsiI CCGC 6 cut(s) 59, 62, 404, 761, 824, 887
SstI GAGCTC 1 cut(s) 239
StyD4I CCNGG 2 cut(s) 378, 866
TaaI ACNGT 1 cut(s) 445
TaiI ACGT 1 cut(s) 562
TaqI TCGA 6 cut(s) 38, 216, 239, 456, 533, 793
TasI AATT 7 cut(s) 171, 293, 349, 589, 638, 712, 740
TatI WGTACW 1 cut(s) 631
TauI GCSGC 1 cut(s) 62
TfiI GAWTC 2 cut(s) 687, 795
TseI GCWGC 3 cut(s) 94, 701, 815
TspDTI ATGAA 2 cut(s) 278, 851
TspGWI ACGGA 2 cut(s) 91, 236
Van91I CCANNNNNTGG 1 cut(s) 326
XapI RAATTY 3 cut(s) 638, 712, 740
XceI RCATGY 2 cut(s) 370, 523
XhoI CTCGAG 1 cut(s) 215
XmiI GTMKAC 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.