pycom05g09170

Belongs to the cyclin family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Reverse (-)
12195613 .. 12198669
3057 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g09170.2

Sequence Viewer

Length: 1128 bp
ATGGAAAAGTACCGGGAAGAAAAACCAGACCCTCTCTGTAATTCTCAAATTTCAATCATGGACGACAGCGCCACCACCAACAGCAACCGCTCGTCTATTAAGCGATCCTCCTCCGCGTCTCCGTCCCTGCAGATTCCTGCTCCCAAGAGGCGAGTCGTCCTGGGCGAACTCACCAACTTGCCGATTCAGGACTCGGATCGGAAGAAACCCAAGAGGAACTGGGTTAAGAGGAAGAGTAACATGATGAAGAAAGAAGAGGAGGAGGTCCATGAGACGGAGATTGTTTCGAGCTCTGTCGACCAAAGCAACTCTGAGTGCTCGTCTTCTATATATCAGCATCTTCACTCCTTGGAGATGGAGGCAAACAAGAGGCCGTCACCTAGTTACATGGGTAGGGTGCAAAATGATATTTCACCAAAAATGCGAGGAATTCTGGTGGATTGGTTGGTGGAGGTTGCAGAGGAATACAAGCTTGTTACAGACACCCTTTATCTCACTGTATCGTATCTTGACAGATACCTTTCTTCATATGCTGTCAGCAGGAGCAAGCTACAGCTTCTTGGTGTTTCTTGCATGATTGTTGCCTCAAAATATGAAGAGATTTGTCCTCCACATGTTGAGGACTTCTGCTATATAACCGATAATACCTACGTCGTGGAAGAGGTGTTGGAAATGGAGAGGGATGTGGTCAAATTTTTGAACTCTGACACCGGACCTCCTACAACAAAGAATTTCCTCAGACTCTTCACCAAAGCTGCCCAGGACAATTACAACTCTGCTGGTGTGTTCGAATACTTGAGTTGCTATCTTTCGGAGCTAAGTTTGTTAGACTACAGCTGTGTCCAGTTCCTACCATCAGTTGTTGCTGCATCAGCCATTTTCCTTTCGAGGTTCACGATCCAACCTGATGTGCATCCTTGGAGCTTGGCGTTGCAGTCCTATTCCGGTTATGGACCATCCGACTTGAGAATGTGTGTCCTTGCCATTCATGACTTGCAGTTGAACAGAAAACCAAGCTCTTTGCGAGCAATAAGAGAAAAATACACGAGGCCAAAGAATAAAAGCGTGGCCAAACTGTCTTCGCCCTTGGAAATTCCTGGAGCTTACTTTGAGGCCATCTACCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

376

Amino Acids

42.61

Weight (kDa)

6.36

Isoelectric Point (pI)

57.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000541)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47210 AT1G47210 AT1G47220 AT1G47230 AT1G47230 AT2G01310 AT5G43080 AT5G43080
fragaria_vesca FvH4_2g04770 FvH4_2g04770 FvH4_2g04770 FvH4_2g33510 FvH4_2g33510 FvH4_2g33510 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33530 FvH4_2g33530
malus_domestica MD05G1092000.v1.1 MD08G1091000.v1.1 MD08G1091200.v1.1 MD10G1100200.v1.1 MD10G1100700.v1.1 MD12G1105600.v1.1 MD15G1075100.v1.1 MD15G1075200.v1.1
prunus_persica Prupe.1G428000_v2.0.a1 Prupe.1G428100_v2.0.a1 Prupe.4G285800_v2.0.a1 Prupe.8G137700_v2.0.a1 Prupe.8G137700_v2.0.a1
pyrus_communis pycom05g09170 pycom08g07360 pycom08g07370 pycom15g07000 pycom15g07020
rosa_chinensis RchiOBHm_Chr3g0465621 RchiOBHm_Chr6g0254421 RchiOBHm_Chr6g0254451 RchiOBHm_Chr6g0308961 RchiOBHm_Chr6g0308971 RchiOBHm_Chr6g0308991 RchiOBHm_Chr7g0190851
rosa_laevigata RLG00000003915 RLG00000010598 RLG00000010599 RLG00000010600 RLG00000014913
rosa_multiflora Rmu_sc0009578.1_g000002 Rmu_sc0009578.1_g000003 Rmu_sc0029942.1_g000001 Rmu_sc0036151.1_g000001 Rmu_sc0036151.1_g000002 Rmu_sc0037719.1_g000001 Rmu_sc0042877.1_g000001 Rmu_ssc0000481.1_g000003
rosa_roxburghii Rroxscaffold_7G00159740 Rroxscaffold_7G00159750 Rroxscaffold_7G00159760 Rroxscaffold_7G00159770 Rroxscaffold_7G00210810
rosa_rugosa Rorug05G0552200 Rorug05G0552300 Rorug05G0552400
rosa_samantha Rh3CG081000 Rh6AG069300 Rh6AG481300 Rh6AG481600 Rh6BG062000 Rh6BG490400 Rh6BG490500 Rh6BG490600 Rh6CG062100 Rh6CG495700 Rh6CG495900 Rh6DG059100 Rh6DG481600 Rh6DG481700 Rh6DG481800
rosa_wichuraiana Rw6G006090 Rw6G041930 Rw6G041940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 90
AccI GTMKAC 1 cut(s) 297
AccII CGCG 1 cut(s) 116
AciI CCGC 2 cut(s) 88, 114
AclWI GGATC 3 cut(s) 99, 204, 892
AcoI YGGCCR 1 cut(s) 1068
AcsI RAATTY 5 cut(s) 48, 429, 692, 730, 1092
AfaI GTAC 1 cut(s) 11
AfiI CCNNNNNNNGG 1 cut(s) 274
AflIII ACRYGT 1 cut(s) 613
AgsI TTSAA 3 cut(s) 54, 700, 1003
AjnI CCWGG 3 cut(s) 159, 759, 1096
Alw21I GWGCWC 2 cut(s) 293, 320
Alw26I GTCTC 2 cut(s) 123, 266
AlwI GGATC 3 cut(s) 99, 204, 892
AoxI GGCC 4 cut(s) 371, 1049, 1068, 1113
ApeKI GCWGC 2 cut(s) 755, 866
ApoI RAATTY 5 cut(s) 48, 429, 692, 730, 1092
AspLEI GCGC 1 cut(s) 71
AspS9I GGNCC 3 cut(s) 265, 713, 953
AsuC2I CCSGG 1 cut(s) 14
AsuHPI GGTGA 4 cut(s) 163, 369, 405, 739
AsuII TTCGAA 1 cut(s) 789
AvaII GGWCC 3 cut(s) 265, 713, 953
BalI TGGCCA 1 cut(s) 1070
BanII GRGCYC 1 cut(s) 293
BauI CACGAG 1 cut(s) 1045
BbsI GAAGAC 2 cut(s) 315, 1071
Bbv12I GWGCWC 2 cut(s) 293, 320
BbvI GCAGC 2 cut(s) 742, 853
BccI CCATC 4 cut(s) 349, 862, 964, 1124
BceAI ACGGC 1 cut(s) 358
BciT130I CCWGG 3 cut(s) 161, 761, 1098
BcnI CCSGG 1 cut(s) 14
BcoDI GTCTC 2 cut(s) 123, 266
BfaI CTAG 1 cut(s) 381
BfmI CTRYAG 3 cut(s) 128, 551, 832
BfoI RGCGCY 1 cut(s) 72
BisI GCNGC 2 cut(s) 756, 867
BlsI GCNGC 2 cut(s) 757, 868
Bme1390I CCNGG 4 cut(s) 14, 161, 761, 1098
Bme18I GGWCC 3 cut(s) 265, 713, 953
BmgT120I GGNCC 3 cut(s) 265, 713, 953
BmrFI CCNGG 4 cut(s) 14, 161, 761, 1098
BmrI ACTGGG 1 cut(s) 229
BmsI GCATC 3 cut(s) 346, 878, 922
BmuI ACTGGG 1 cut(s) 229
BpiI GAAGAC 2 cut(s) 315, 1071
BpmI CTGGAG 1 cut(s) 1119
Bpu14I TTCGAA 1 cut(s) 789
BpuEI CTTGAG 2 cut(s) 817, 985
BpuMI CCSGG 1 cut(s) 14
BsaBI GATNNNNATC 1 cut(s) 912
BsaJI CCNNGG 5 cut(s) 160, 348, 759, 917, 1086
BsaWI WCCGGW 2 cut(s) 710, 944
BsaXI ACNNNNNCTCC 2 cut(s) 700, 730
Bsc4I CCNNNNNNNGG 1 cut(s) 274
Bse1I ACTGG 2 cut(s) 224, 844
Bse8I GATNNNNATC 1 cut(s) 912
BseBI CCWGG 3 cut(s) 161, 761, 1098
BseDI CCNNGG 5 cut(s) 160, 348, 759, 917, 1086
BseGI GGATG 3 cut(s) 688, 913, 956
BseJI GATNNNNATC 1 cut(s) 912
BseLI CCNNNNNNNGG 1 cut(s) 274
BseMII CTCAG 2 cut(s) 303, 751
BseNI ACTGG 2 cut(s) 224, 844
BseRI GAGGAG 3 cut(s) 100, 272, 275
BseXI GCAGC 2 cut(s) 742, 853
Bsh1236I CGCG 1 cut(s) 116
BshFI GGCC 4 cut(s) 373, 1051, 1070, 1115
BsiHKAI GWGCWC 2 cut(s) 293, 320
BsiSI CCGG 3 cut(s) 13, 711, 945
BslFI GGGAC 1 cut(s) 109
BslI CCNNNNNNNGG 1 cut(s) 274
BsmAI GTCTC 2 cut(s) 123, 266
BsmBI CGTCTC 2 cut(s) 123, 266
BsmFI GGGAC 1 cut(s) 109
BsnI GGCC 4 cut(s) 373, 1051, 1070, 1115
Bsp119I TTCGAA 1 cut(s) 789
Bsp1286I GDGCHC 2 cut(s) 293, 320
Bsp143I GATC 3 cut(s) 104, 196, 897
BspACI CCGC 2 cut(s) 88, 114
BspANI GGCC 4 cut(s) 373, 1051, 1070, 1115
BspCNI CTCAG 2 cut(s) 304, 750
BspFNI CGCG 1 cut(s) 116
BspHI TCATGA 1 cut(s) 988
BspMAI CTGCAG 1 cut(s) 132
BspPI GGATC 3 cut(s) 99, 204, 892
BspT104I TTCGAA 1 cut(s) 789
BsrBI CCGCTC 1 cut(s) 90
BsrI ACTGG 2 cut(s) 224, 844
BssECI CCNNGG 5 cut(s) 160, 348, 759, 917, 1086
BssMI GATC 3 cut(s) 104, 196, 897
BssSI CACGAG 1 cut(s) 1045
BssT1I CCWWGG 3 cut(s) 348, 917, 1086
Bst2BI CACGAG 1 cut(s) 1045
Bst2UI CCWGG 3 cut(s) 161, 761, 1098
Bst4CI ACNGT 2 cut(s) 499, 1077
Bst6I CTCTTC 5 cut(s) 227, 249, 591, 654, 749
BstBI TTCGAA 1 cut(s) 789
BstC8I GCNNGC 2 cut(s) 548, 1026
BstDEI CTNAG 3 cut(s) 312, 737, 818
BstF5I GGATG 3 cut(s) 688, 913, 956
BstFNI CGCG 1 cut(s) 116
BstH2I RGCGCY 1 cut(s) 72
BstHHI GCGC 1 cut(s) 71
BstKTI GATC 3 cut(s) 107, 199, 900
BstMAI GTCTC 2 cut(s) 123, 266
BstMBI GATC 3 cut(s) 104, 196, 897
BstMWI GCNNNNNNNGC 1 cut(s) 872
BstNI CCWGG 3 cut(s) 161, 761, 1098
BstNSI RCATGY 1 cut(s) 617
BstSCI CCNGG 4 cut(s) 12, 159, 759, 1096
BstSFI CTRYAG 3 cut(s) 128, 551, 832
BstUI CGCG 1 cut(s) 116
BstV1I GCAGC 2 cut(s) 742, 853
BstV2I GAAGAC 2 cut(s) 315, 1071
BsuRI GGCC 4 cut(s) 373, 1051, 1070, 1115
BtsCI GGATG 3 cut(s) 688, 913, 956
BtsIMutI CAGTG 1 cut(s) 495
Cac8I GCNNGC 2 cut(s) 548, 1026
CciI TCATGA 1 cut(s) 988
CfoI GCGC 1 cut(s) 71
Cfr13I GGNCC 3 cut(s) 265, 713, 953
CseI GACGC 1 cut(s) 105
Csp6I GTAC 1 cut(s) 10
CviAII CATG 8 cut(s) 58, 241, 269, 388, 574, 614, 989, 1125
CviQI GTAC 1 cut(s) 10
DdeI CTNAG 3 cut(s) 312, 737, 818
DpnI GATC 3 cut(s) 106, 198, 899
DpnII GATC 3 cut(s) 104, 196, 897
EaeI YGGCCR 1 cut(s) 1068
Eam1104I CTCTTC 5 cut(s) 227, 249, 591, 654, 749
EarI CTCTTC 5 cut(s) 227, 249, 591, 654, 749
Ecl136II GAGCTC 1 cut(s) 291
Eco130I CCWWGG 3 cut(s) 348, 917, 1086
Eco24I GRGCYC 1 cut(s) 293
Eco47I GGWCC 3 cut(s) 265, 713, 953
Eco53kI GAGCTC 1 cut(s) 291
EcoICRI GAGCTC 1 cut(s) 291
EcoRI GAATTC 1 cut(s) 429
EcoRII CCWGG 3 cut(s) 159, 759, 1096
EcoT14I CCWWGG 3 cut(s) 348, 917, 1086
EcoT38I GRGCYC 1 cut(s) 293
ErhI CCWWGG 3 cut(s) 348, 917, 1086
Esp3I CGTCTC 2 cut(s) 123, 266
FaeI CATG 8 cut(s) 61, 244, 272, 391, 577, 617, 992, 1128
FaqI GGGAC 1 cut(s) 109
FatI CATG 8 cut(s) 57, 240, 268, 387, 573, 613, 988, 1124
FauNDI CATATG 1 cut(s) 529
FblI GTMKAC 1 cut(s) 297
Fnu4HI GCNGC 2 cut(s) 756, 867
FokI GGATG 3 cut(s) 695, 900, 943
FriOI GRGCYC 1 cut(s) 293
Fsp4HI GCNGC 2 cut(s) 756, 867
FspBI CTAG 1 cut(s) 381
GlaI GCGC 1 cut(s) 70
GluI GCNGC 2 cut(s) 756, 867
GsuI CTGGAG 1 cut(s) 1119
HaeII RGCGCY 1 cut(s) 72
HaeIII GGCC 4 cut(s) 373, 1051, 1070, 1115
HapII CCGG 3 cut(s) 13, 711, 945
HgaI GACGC 1 cut(s) 105
HhaI GCGC 1 cut(s) 71
Hin1II CATG 8 cut(s) 61, 244, 272, 391, 577, 617, 992, 1128
Hin6I GCGC 1 cut(s) 69
HinP1I GCGC 1 cut(s) 69
HincII GTYRAC 1 cut(s) 298
HindII GTYRAC 1 cut(s) 298
HindIII AAGCTT 1 cut(s) 470
HinfI GANTC 5 cut(s) 133, 153, 184, 191, 741
HpaII CCGG 3 cut(s) 13, 711, 945
HphI GGTGA 4 cut(s) 163, 369, 405, 739
Hpy166II GTNNAC 2 cut(s) 298, 894
Hpy188I TCNGA 7 cut(s) 196, 201, 313, 706, 740, 814, 961
Hpy188III TCNNGA 4 cut(s) 188, 509, 895, 989
Hpy8I GTNNAC 2 cut(s) 298, 894
Hpy99I CGWCG 1 cut(s) 656
HpyCH4III ACNGT 2 cut(s) 499, 1077
HpyCH4IV ACGT 1 cut(s) 651
HpyCH4V TGCA 8 cut(s) 130, 400, 458, 573, 869, 913, 934, 997
HpyF10VI GCNNNNNNNGC 1 cut(s) 872
HpyF3I CTNAG 3 cut(s) 312, 737, 818
HpySE526I ACGT 1 cut(s) 651
Hsp92II CATG 8 cut(s) 61, 244, 272, 391, 577, 617, 992, 1128
HspAI GCGC 1 cut(s) 69
Kzo9I GATC 3 cut(s) 104, 196, 897
LmnI GCTCC 5 cut(s) 145, 543, 814, 921, 1100
Lsp1109I GCAGC 2 cut(s) 742, 853
LweI GCATC 3 cut(s) 346, 878, 922
MaeI CTAG 1 cut(s) 381
MaeII ACGT 1 cut(s) 651
MaeIII GTNAC 4 cut(s) 236, 375, 383, 475
MalI GATC 3 cut(s) 106, 198, 899
MbiI CCGCTC 1 cut(s) 90
MboI GATC 3 cut(s) 104, 196, 897
MhlI GDGCHC 2 cut(s) 293, 320
MlsI TGGCCA 1 cut(s) 1070
MluCI AATT 7 cut(s) 40, 48, 429, 692, 730, 766, 1092
MluNI TGGCCA 1 cut(s) 1070
MlyI GAGTC 3 cut(s) 162, 185, 735
MmeI TCCRAC 3 cut(s) 648, 925, 984
Mox20I TGGCCA 1 cut(s) 1070
MscI TGGCCA 1 cut(s) 1070
MseI TTAA 2 cut(s) 99, 225
Msp20I TGGCCA 1 cut(s) 1070
MspA1I CMGCKG 1 cut(s) 837
MspI CCGG 3 cut(s) 13, 711, 945
MspR9I CCNGG 4 cut(s) 14, 161, 761, 1098
MvaI CCWGG 3 cut(s) 161, 761, 1098
MvnI CGCG 1 cut(s) 116
MwoI GCNNNNNNNGC 1 cut(s) 872
NciI CCSGG 1 cut(s) 14
NdeI CATATG 1 cut(s) 529
NdeII GATC 3 cut(s) 104, 196, 897
NlaIII CATG 8 cut(s) 61, 244, 272, 391, 577, 617, 992, 1128
NmuCI GTSAC 1 cut(s) 375
NspI RCATGY 1 cut(s) 617
NspV TTCGAA 1 cut(s) 789
PagI TCATGA 1 cut(s) 988
PciI ACATGT 1 cut(s) 613
PcsI WCGNNNNNNNCGW 2 cut(s) 162, 893
PfeI GAWTC 2 cut(s) 133, 184
PfoI TCCNGGA 1 cut(s) 1096
PkrI GCNGC 2 cut(s) 757, 868
PleI GAGTC 3 cut(s) 161, 185, 735
PpsI GAGTC 3 cut(s) 161, 185, 735
PscI ACATGT 1 cut(s) 613
Psp124BI GAGCTC 1 cut(s) 293
Psp6I CCWGG 3 cut(s) 159, 759, 1096
PspGI CCWGG 3 cut(s) 159, 759, 1096
PspPI GGNCC 3 cut(s) 265, 713, 953
PstI CTGCAG 1 cut(s) 132
PvuII CAGCTG 1 cut(s) 837
RsaI GTAC 1 cut(s) 11
RsaNI GTAC 1 cut(s) 10
SacI GAGCTC 1 cut(s) 293
SalI GTCGAC 1 cut(s) 296
SaqAI TTAA 2 cut(s) 99, 225
SatI GCNGC 2 cut(s) 756, 867
Sau3AI GATC 3 cut(s) 104, 196, 897
Sau96I GGNCC 3 cut(s) 265, 713, 953
SchI GAGTC 3 cut(s) 162, 185, 735
ScrFI CCNGG 4 cut(s) 14, 161, 761, 1098
SduI GDGCHC 2 cut(s) 293, 320
SfaNI GCATC 3 cut(s) 346, 878, 922
SfcI CTRYAG 3 cut(s) 128, 551, 832
SfuI TTCGAA 1 cut(s) 789
SinI GGWCC 3 cut(s) 265, 713, 953
SmlI CTYRAG 2 cut(s) 796, 964
SmoI CTYRAG 2 cut(s) 796, 964
Sse9I AATT 7 cut(s) 40, 48, 429, 692, 730, 766, 1092
SsiI CCGC 2 cut(s) 88, 114
SspMI CTAG 1 cut(s) 381
SstI GAGCTC 1 cut(s) 293
StyD4I CCNGG 4 cut(s) 12, 159, 759, 1096
StyI CCWWGG 3 cut(s) 348, 917, 1086
TaaI ACNGT 2 cut(s) 499, 1077
TaiI ACGT 1 cut(s) 654
TaqI TCGA 4 cut(s) 287, 297, 789, 887
TasI AATT 7 cut(s) 40, 48, 429, 692, 730, 766, 1092
TfiI GAWTC 2 cut(s) 133, 184
Tru1I TTAA 2 cut(s) 99, 225
Tru9I TTAA 2 cut(s) 99, 225
TscAI CASTG 1 cut(s) 502
TseFI GTSAC 1 cut(s) 375
TseI GCWGC 2 cut(s) 755, 866
Tsp45I GTSAC 1 cut(s) 375
TspDTI ATGAA 4 cut(s) 260, 516, 609, 977
TspGWI ACGGA 2 cut(s) 111, 290
TspRI CASTG 1 cut(s) 502
VpaK11BI GGWCC 3 cut(s) 265, 713, 953
XapI RAATTY 5 cut(s) 48, 429, 692, 730, 1092
XceI RCATGY 1 cut(s) 617
XmiI GTMKAC 1 cut(s) 297
XspI CTAG 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.