MD15G1075100.v1.1

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0000541
Physical Location & Seq
Forward (+)
5119087 .. 5121867
2781 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1075100.v1.1.491

Sequence Viewer

Length: 1086 bp
ATGGCCTCTACCACTGTGGCGGAGCAAGTGAACCGCAGTCGCATCACCACTCGCGCGGCTGCCAAGAGGAGGGCGATGGCCACCTTGGCGGAGGAGAACCAGTTGGGTAATAAGAAGCGCGTGGTGCTTGGAGATGTTACGAATTTGGTTAACGTCGTCGTTTCGGGGAACTCCAAACGGGTTGAGCTGCAGAAGCCCCATTGTGTCACCAAGAAGGAAAAGAGGGCCGAGGCGGCGCGTGAGTTTGAGGATCCGCAGCTTTGTGGCCCGTACGCTTCCGACATTTATGCATATCTCCGTCGTATGGAGGCGGAGCCAAAGAGAAGGCCGTTGCCTGATTACATGGAGAAGGTTCAGAAGGATGCAAATGCCAATATGAGGGCAGTGCTTGTGGATTGGTTAGTGGAGGTTTCAGAGGAATACAAGCTCCTTCCGGAAACCCTTCATCTATCTGTTTCTTACATCGATAGATTTCTCTCAACGAATGTTGTCCACAAGCAGAAACTTCAGCTTCTGGGAGTTTCTTCGATCTTCATTGCCTCGAAATATGAAGAGATTGATCCTCGTAATGTGGATGAGCTCTGTGACATAACCGAAAATACATACACAAAAGAAGAGGTGATCAAGATGGAGGCTGATATCCTCAAATCCCTGAAGTTTGAAATGGGGAATCCAACTACTCGTACCTTCTTAAGAAAATTCACTGATGTTGCTCAAGAGAGTTACAAAACTCCCAATTTGCAGTTAGAGTTCTTGGTTGCCTACCTTTCGGAGCTGAGTTTGTTGGATTATAAACTTGTCAAATTCCTGCCTTCTTTGATAGCTGCATCAGCTGCTTTTCTGGCAAGATTTATGACTCGAACAAAAACACATCCTTGGTGTCCAGCACTACAACAGTATACCGGATATAAAGCAGCTGATTTGAAAGAATGTGTTCTTGCCATACATGAGATGTGCTTGGGAAGAAGAGCAAGAAATTTGAATGTTATTCAAGAGAAATACAAACAACCTAAGTTCAAATGTGTGGCACATATTCCTTGCCCTCAAGAAATACCAGTTCATTTCTTTCAAGATCTGAAAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

362

Amino Acids

41.37

Weight (kDa)

8.99

Isoelectric Point (pI)

47.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 94 - 222 2.8e-45 Cyclin, N-terminal domain
Cyclin_C PF02984 225 - 348 1.1e-34 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000541)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47210 AT1G47210 AT1G47220 AT1G47230 AT1G47230 AT2G01310 AT5G43080 AT5G43080
fragaria_vesca FvH4_2g04770 FvH4_2g04770 FvH4_2g04770 FvH4_2g33510 FvH4_2g33510 FvH4_2g33510 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33530 FvH4_2g33530
malus_domestica MD05G1092000.v1.1 MD08G1091000.v1.1 MD08G1091200.v1.1 MD10G1100200.v1.1 MD10G1100700.v1.1 MD12G1105600.v1.1 MD15G1075100.v1.1 MD15G1075200.v1.1
prunus_persica Prupe.1G428000_v2.0.a1 Prupe.1G428100_v2.0.a1 Prupe.4G285800_v2.0.a1 Prupe.8G137700_v2.0.a1 Prupe.8G137700_v2.0.a1
pyrus_communis pycom05g09170 pycom08g07360 pycom08g07370 pycom15g07000 pycom15g07020
rosa_chinensis RchiOBHm_Chr3g0465621 RchiOBHm_Chr6g0254421 RchiOBHm_Chr6g0254451 RchiOBHm_Chr6g0308961 RchiOBHm_Chr6g0308971 RchiOBHm_Chr6g0308991 RchiOBHm_Chr7g0190851
rosa_laevigata RLG00000003915 RLG00000010598 RLG00000010599 RLG00000010600 RLG00000014913
rosa_multiflora Rmu_sc0009578.1_g000002 Rmu_sc0009578.1_g000003 Rmu_sc0029942.1_g000001 Rmu_sc0036151.1_g000001 Rmu_sc0036151.1_g000002 Rmu_sc0037719.1_g000001 Rmu_sc0042877.1_g000001 Rmu_ssc0000481.1_g000003
rosa_roxburghii Rroxscaffold_7G00159740 Rroxscaffold_7G00159750 Rroxscaffold_7G00159760 Rroxscaffold_7G00159770 Rroxscaffold_7G00210810
rosa_rugosa Rorug05G0552200 Rorug05G0552300 Rorug05G0552400
rosa_samantha Rh3CG081000 Rh6AG069300 Rh6AG481300 Rh6AG481600 Rh6BG062000 Rh6BG490400 Rh6BG490500 Rh6BG490600 Rh6CG062100 Rh6CG495700 Rh6CG495900 Rh6DG059100 Rh6DG481600 Rh6DG481700 Rh6DG481800
rosa_wichuraiana Rw6G006090 Rw6G041930 Rw6G041940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 792
AccI GTMKAC 1 cut(s) 899
AccII CGCG 4 cut(s) 54, 56, 120, 238
AccIII TCCGGA 1 cut(s) 433
AciI CCGC 7 cut(s) 20, 34, 56, 89, 233, 254, 311
AclWI GGATC 3 cut(s) 245, 258, 554
AcoI YGGCCR 1 cut(s) 78
AcsI RAATTY 4 cut(s) 142, 698, 803, 976
AcuI CTGAAG 2 cut(s) 491, 674
AfaI GTAC 2 cut(s) 272, 685
AfiI CCNNNNNNNGG 3 cut(s) 69, 304, 378
AflII CTTAAG 1 cut(s) 691
AgsI TTSAA 6 cut(s) 662, 925, 982, 992, 1018, 1070
AluBI AGCT 9 cut(s) 187, 259, 427, 511, 580, 775, 824, 833, 917
AluI AGCT 9 cut(s) 187, 259, 427, 511, 580, 775, 824, 833, 917
Alw21I GWGCWC 1 cut(s) 582
AlwI GGATC 3 cut(s) 245, 258, 554
AlwNI CAGNNNCTG 1 cut(s) 514
Aor13HI TCCGGA 1 cut(s) 433
AoxI GGCC 5 cut(s) 3, 78, 225, 265, 326
ApeKI GCWGC 6 cut(s) 59, 187, 256, 824, 833, 914
ApoI RAATTY 4 cut(s) 142, 698, 803, 976
Asp700I GAANNNNTTC 2 cut(s) 441, 933
AspLEI GCGC 3 cut(s) 56, 120, 238
AspS9I GGNCC 2 cut(s) 225, 266
AsuHPI GGTGA 3 cut(s) 37, 199, 631
BalI TGGCCA 1 cut(s) 80
BamHI GGATCC 1 cut(s) 250
BanII GRGCYC 1 cut(s) 582
Bbv12I GWGCWC 1 cut(s) 582
BbvI GCAGC 6 cut(s) 46, 174, 268, 811, 820, 926
BccI CCATC 2 cut(s) 70, 622
BceAI ACGGC 1 cut(s) 313
BcgI CGANNNNNNTGC 2 cut(s) 269, 303
BclI TGATCA 1 cut(s) 621
BfmI CTRYAG 1 cut(s) 188
BfrI CTTAAG 1 cut(s) 691
BglI GCCNNNNNGGC 2 cut(s) 86, 233
BglII AGATCT 1 cut(s) 1072
BisI GCNGC 8 cut(s) 57, 60, 188, 234, 257, 825, 834, 915
BlsI GCNGC 8 cut(s) 58, 61, 189, 235, 258, 826, 835, 916
BmgT120I GGNCC 2 cut(s) 225, 266
BmiI GGNNCC 2 cut(s) 252, 315
BmsI GCATC 3 cut(s) 51, 352, 836
BpuEI CTTGAG 2 cut(s) 699, 1029
Bsa29I ATCGAT 1 cut(s) 465
BsaJI CCNNGG 3 cut(s) 84, 228, 875
BsaWI WCCGGW 2 cut(s) 433, 902
BsaXI ACNNNNNCTCC 2 cut(s) 86, 116
Bsc4I CCNNNNNNNGG 3 cut(s) 69, 304, 378
Bse1I ACTGG 2 cut(s) 100, 1055
Bse3DI GCAATG 1 cut(s) 534
BseAI TCCGGA 1 cut(s) 433
BseCI ATCGAT 1 cut(s) 465
BseDI CCNNGG 3 cut(s) 84, 228, 875
BseGI GGATG 3 cut(s) 367, 580, 871
BseLI CCNNNNNNNGG 3 cut(s) 69, 304, 378
BseMI GCAATG 1 cut(s) 534
BseMII CTCAG 1 cut(s) 767
BseNI ACTGG 2 cut(s) 100, 1055
BseRI GAGGAG 2 cut(s) 82, 107
BseXI GCAGC 6 cut(s) 46, 174, 268, 811, 820, 926
Bsh1236I CGCG 4 cut(s) 54, 56, 120, 238
BshFI GGCC 5 cut(s) 5, 80, 227, 267, 328
BshVI ATCGAT 1 cut(s) 465
BsiHKAI GWGCWC 1 cut(s) 582
BsiSI CCGG 2 cut(s) 434, 903
BsiWI CGTACG 1 cut(s) 270
BslI CCNNNNNNNGG 3 cut(s) 69, 304, 378
BsnI GGCC 5 cut(s) 5, 80, 227, 267, 328
Bsp1286I GDGCHC 1 cut(s) 582
Bsp13I TCCGGA 1 cut(s) 433
Bsp143I GATC 5 cut(s) 250, 528, 559, 621, 1072
BspACI CCGC 7 cut(s) 20, 34, 56, 89, 233, 254, 311
BspANI GGCC 5 cut(s) 5, 80, 227, 267, 328
BspCNI CTCAG 1 cut(s) 768
BspDI ATCGAT 1 cut(s) 465
BspEI TCCGGA 1 cut(s) 433
BspFNI CGCG 4 cut(s) 54, 56, 120, 238
BspLI GGNNCC 2 cut(s) 252, 315
BspMAI CTGCAG 1 cut(s) 192
BspPI GGATC 3 cut(s) 245, 258, 554
BspQI GCTCTTC 1 cut(s) 961
BspTI CTTAAG 1 cut(s) 691
BsrDI GCAATG 1 cut(s) 534
BsrI ACTGG 2 cut(s) 100, 1055
BssECI CCNNGG 3 cut(s) 84, 228, 875
BssMI GATC 5 cut(s) 250, 528, 559, 621, 1072
BssNAI GTATAC 1 cut(s) 900
BssT1I CCWWGG 2 cut(s) 84, 875
Bst1107I GTATAC 1 cut(s) 900
Bst4CI ACNGT 2 cut(s) 16, 897
Bst6I CTCTTC 3 cut(s) 546, 609, 961
BstAFI CTTAAG 1 cut(s) 691
BstAPI GCANNNNNTGC 1 cut(s) 833
BstDEI CTNAG 2 cut(s) 776, 1011
BstF5I GGATG 3 cut(s) 367, 580, 871
BstFNI CGCG 4 cut(s) 54, 56, 120, 238
BstHHI GCGC 3 cut(s) 56, 120, 238
BstKTI GATC 5 cut(s) 253, 531, 562, 624, 1075
BstMBI GATC 5 cut(s) 250, 528, 559, 621, 1072
BstMWI GCNNNNNNNGC 7 cut(s) 86, 124, 193, 233, 830, 833, 842
BstSFI CTRYAG 1 cut(s) 188
BstUI CGCG 4 cut(s) 54, 56, 120, 238
BstV1I GCAGC 6 cut(s) 46, 174, 268, 811, 820, 926
BstX2I RGATCY 2 cut(s) 250, 1072
BstYI RGATCY 2 cut(s) 250, 1072
BstZ17I GTATAC 1 cut(s) 900
Bsu15I ATCGAT 1 cut(s) 465
BsuRI GGCC 5 cut(s) 5, 80, 227, 267, 328
BsuTUI ATCGAT 1 cut(s) 465
BtgZI GCGATG 1 cut(s) 89
BtsCI GGATG 3 cut(s) 367, 580, 871
BtsI GCAGTG 1 cut(s) 390
BtsIMutI CAGTG 3 cut(s) 12, 390, 702
CaiI CAGNNNCTG 1 cut(s) 514
CfoI GCGC 3 cut(s) 56, 120, 238
Cfr13I GGNCC 2 cut(s) 225, 266
ClaI ATCGAT 1 cut(s) 465
Csp6I GTAC 2 cut(s) 271, 684
CviAII CATG 3 cut(s) 343, 947, 1083
CviQI GTAC 2 cut(s) 271, 684
DdeI CTNAG 2 cut(s) 776, 1011
DpnI GATC 5 cut(s) 252, 530, 561, 623, 1074
DpnII GATC 5 cut(s) 250, 528, 559, 621, 1072
EaeI YGGCCR 1 cut(s) 78
Eam1104I CTCTTC 3 cut(s) 546, 609, 961
EarI CTCTTC 3 cut(s) 546, 609, 961
EciI GGCGGA 3 cut(s) 35, 104, 326
Ecl136II GAGCTC 1 cut(s) 580
Eco130I CCWWGG 2 cut(s) 84, 875
Eco24I GRGCYC 1 cut(s) 582
Eco32I GATATC 1 cut(s) 640
Eco53kI GAGCTC 1 cut(s) 580
Eco57I CTGAAG 2 cut(s) 491, 674
EcoICRI GAGCTC 1 cut(s) 580
EcoRV GATATC 1 cut(s) 640
EcoT14I CCWWGG 2 cut(s) 84, 875
EcoT22I ATGCAT 1 cut(s) 292
EcoT38I GRGCYC 1 cut(s) 582
ErhI CCWWGG 2 cut(s) 84, 875
FaeI CATG 3 cut(s) 346, 950, 1086
FatI CATG 3 cut(s) 342, 946, 1082
FbaI TGATCA 1 cut(s) 621
FblI GTMKAC 1 cut(s) 899
Fnu4HI GCNGC 8 cut(s) 57, 60, 188, 234, 257, 825, 834, 915
FokI GGATG 3 cut(s) 374, 587, 858
FriOI GRGCYC 1 cut(s) 582
Fsp4HI GCNGC 8 cut(s) 57, 60, 188, 234, 257, 825, 834, 915
GlaI GCGC 3 cut(s) 55, 119, 237
GluI GCNGC 8 cut(s) 57, 60, 188, 234, 257, 825, 834, 915
HaeIII GGCC 5 cut(s) 5, 80, 227, 267, 328
HapII CCGG 2 cut(s) 434, 903
HhaI GCGC 3 cut(s) 56, 120, 238
Hin1II CATG 3 cut(s) 346, 950, 1086
Hin6I GCGC 3 cut(s) 54, 118, 236
HinP1I GCGC 3 cut(s) 54, 118, 236
HincII GTYRAC 1 cut(s) 151
HindII GTYRAC 1 cut(s) 151
HinfI GANTC 2 cut(s) 670, 856
HpaI GTTAAC 1 cut(s) 151
HpaII CCGG 2 cut(s) 434, 903
HphI GGTGA 3 cut(s) 37, 199, 631
Hpy166II GTNNAC 4 cut(s) 31, 151, 493, 900
Hpy188I TCNGA 5 cut(s) 280, 357, 415, 772, 1077
Hpy188III TCNNGA 6 cut(s) 434, 625, 716, 992, 1046, 1070
Hpy8I GTNNAC 4 cut(s) 31, 151, 493, 900
Hpy99I CGWCG 3 cut(s) 158, 161, 303
HpyAV CCTTC 8 cut(s) 208, 318, 343, 352, 440, 452, 697, 822
HpyCH4III ACNGT 2 cut(s) 16, 897
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 5 cut(s) 190, 290, 365, 742, 827
HpyF10VI GCNNNNNNNGC 7 cut(s) 86, 124, 193, 233, 830, 833, 842
HpyF3I CTNAG 2 cut(s) 776, 1011
HpySE526I ACGT 1 cut(s) 153
Hsp92II CATG 3 cut(s) 346, 950, 1086
HspAI GCGC 3 cut(s) 54, 118, 236
Kpn2I TCCGGA 1 cut(s) 433
Ksp22I TGATCA 1 cut(s) 621
KspAI GTTAAC 1 cut(s) 151
Kzo9I GATC 5 cut(s) 250, 528, 559, 621, 1072
LguI GCTCTTC 1 cut(s) 961
LmnI GCTCC 4 cut(s) 22, 313, 432, 772
Lsp1109I GCAGC 6 cut(s) 46, 174, 268, 811, 820, 926
LweI GCATC 3 cut(s) 51, 352, 836
MaeII ACGT 1 cut(s) 153
MaeIII GTNAC 4 cut(s) 136, 205, 584, 722
MalI GATC 5 cut(s) 252, 530, 561, 623, 1074
MboI GATC 5 cut(s) 250, 528, 559, 621, 1072
MboII GAAGA 6 cut(s) 516, 523, 563, 626, 975, 978
MflI RGATCY 2 cut(s) 250, 1072
MhlI GDGCHC 1 cut(s) 582
MlsI TGGCCA 1 cut(s) 80
MluCI AATT 5 cut(s) 142, 698, 736, 803, 976
MluNI TGGCCA 1 cut(s) 80
MlyI GAGTC 1 cut(s) 850
MmeI TCCRAC 3 cut(s) 303, 698, 765
Mox20I TGGCCA 1 cut(s) 80
Mph1103I ATGCAT 1 cut(s) 292
MroI TCCGGA 1 cut(s) 433
MroXI GAANNNNTTC 2 cut(s) 441, 933
MscI TGGCCA 1 cut(s) 80
MseI TTAA 2 cut(s) 150, 692
Msp20I TGGCCA 1 cut(s) 80
MspA1I CMGCKG 2 cut(s) 833, 917
MspCI CTTAAG 1 cut(s) 691
MspI CCGG 2 cut(s) 434, 903
MvnI CGCG 4 cut(s) 54, 56, 120, 238
MwoI GCNNNNNNNGC 7 cut(s) 86, 124, 193, 233, 830, 833, 842
NdeII GATC 5 cut(s) 250, 528, 559, 621, 1072
NlaIII CATG 3 cut(s) 346, 950, 1086
NlaIV GGNNCC 2 cut(s) 252, 315
NmeAIII GCCGAG 1 cut(s) 253
NmuCI GTSAC 2 cut(s) 205, 584
NsiI ATGCAT 1 cut(s) 292
PciSI GCTCTTC 1 cut(s) 961
PdmI GAANNNNTTC 2 cut(s) 441, 933
PfeI GAWTC 1 cut(s) 670
Pfl23II CGTACG 1 cut(s) 270
PkrI GCNGC 8 cut(s) 58, 61, 189, 235, 258, 826, 835, 916
PleI GAGTC 1 cut(s) 850
PpsI GAGTC 1 cut(s) 850
PsiI TTATAA 1 cut(s) 792
Psp124BI GAGCTC 1 cut(s) 582
PspLI CGTACG 1 cut(s) 270
PspN4I GGNNCC 2 cut(s) 252, 315
PspPI GGNCC 2 cut(s) 225, 266
PstI CTGCAG 1 cut(s) 192
PstNI CAGNNNCTG 1 cut(s) 514
PsuI RGATCY 2 cut(s) 250, 1072
PvuII CAGCTG 2 cut(s) 833, 917
RsaI GTAC 2 cut(s) 272, 685
RsaNI GTAC 2 cut(s) 271, 684
SacI GAGCTC 1 cut(s) 582
SapI GCTCTTC 1 cut(s) 961
SaqAI TTAA 2 cut(s) 150, 692
SatI GCNGC 8 cut(s) 57, 60, 188, 234, 257, 825, 834, 915
Sau3AI GATC 5 cut(s) 250, 528, 559, 621, 1072
Sau96I GGNCC 2 cut(s) 225, 266
SchI GAGTC 1 cut(s) 850
SduI GDGCHC 1 cut(s) 582
SfaNI GCATC 3 cut(s) 51, 352, 836
SfcI CTRYAG 1 cut(s) 188
SmlI CTYRAG 3 cut(s) 691, 714, 1044
SmoI CTYRAG 3 cut(s) 691, 714, 1044
Sse9I AATT 5 cut(s) 142, 698, 736, 803, 976
SsiI CCGC 7 cut(s) 20, 34, 56, 89, 233, 254, 311
SstI GAGCTC 1 cut(s) 582
StyI CCWWGG 2 cut(s) 84, 875
TaaI ACNGT 2 cut(s) 16, 897
TaiI ACGT 1 cut(s) 156
TaqI TCGA 4 cut(s) 465, 527, 542, 859
TasI AATT 5 cut(s) 142, 698, 736, 803, 976
TauI GCSGC 2 cut(s) 59, 236
TfiI GAWTC 1 cut(s) 670
Tru1I TTAA 2 cut(s) 150, 692
Tru9I TTAA 2 cut(s) 150, 692
TscAI CASTG 3 cut(s) 19, 390, 709
TseFI GTSAC 2 cut(s) 205, 584
TseI GCWGC 6 cut(s) 59, 187, 256, 824, 833, 914
Tsp45I GTSAC 2 cut(s) 205, 584
TspDTI ATGAA 4 cut(s) 434, 523, 564, 1049
TspGWI ACGGA 1 cut(s) 287
TspRI CASTG 3 cut(s) 19, 390, 709
Vha464I CTTAAG 1 cut(s) 691
XapI RAATTY 4 cut(s) 142, 698, 803, 976
XmiI GTMKAC 1 cut(s) 899
XmnI GAANNNNTTC 2 cut(s) 441, 933
Zsp2I ATGCAT 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.