Rmu_sc0042877.1_g000001

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0042877.1
OG0000541
Physical Location & Seq
Forward (+)
296 .. 628
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0042877.1_g000001.1.cds

Sequence Viewer

Length: 333 bp
atggcttctttcactgtggccgagaaatgcgctccgcttacgcgcgccgcggccaagaggagggcggcggcggccttggccgaggagcagcagctggcgactaagaagcgcgccgtgctcggagatctcaccaactttgcaaacgtcgtcgttttggcctcaaaaaaccccaattccgatcctgcgctaaagaaacccaaccggagagttgtgctggaacgtgacaatgatgacccacggctttgtgggccttatgcttctgatatctatgcctatcttcgcagaatggaggtaaaaagattgttgctttgcttatttctcttacttacatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

110

Amino Acids

12.2

Weight (kDa)

9.81

Isoelectric Point (pI)

47.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000541)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47210 AT1G47210 AT1G47220 AT1G47230 AT1G47230 AT2G01310 AT5G43080 AT5G43080
fragaria_vesca FvH4_2g04770 FvH4_2g04770 FvH4_2g04770 FvH4_2g33510 FvH4_2g33510 FvH4_2g33510 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33530 FvH4_2g33530
malus_domestica MD05G1092000.v1.1 MD08G1091000.v1.1 MD08G1091200.v1.1 MD10G1100200.v1.1 MD10G1100700.v1.1 MD12G1105600.v1.1 MD15G1075100.v1.1 MD15G1075200.v1.1
prunus_persica Prupe.1G428000_v2.0.a1 Prupe.1G428100_v2.0.a1 Prupe.4G285800_v2.0.a1 Prupe.8G137700_v2.0.a1 Prupe.8G137700_v2.0.a1
pyrus_communis pycom05g09170 pycom08g07360 pycom08g07370 pycom15g07000 pycom15g07020
rosa_chinensis RchiOBHm_Chr3g0465621 RchiOBHm_Chr6g0254421 RchiOBHm_Chr6g0254451 RchiOBHm_Chr6g0308961 RchiOBHm_Chr6g0308971 RchiOBHm_Chr6g0308991 RchiOBHm_Chr7g0190851
rosa_laevigata RLG00000003915 RLG00000010598 RLG00000010599 RLG00000010600 RLG00000014913
rosa_multiflora Rmu_sc0009578.1_g000002 Rmu_sc0009578.1_g000003 Rmu_sc0029942.1_g000001 Rmu_sc0036151.1_g000001 Rmu_sc0036151.1_g000002 Rmu_sc0037719.1_g000001 Rmu_sc0042877.1_g000001 Rmu_ssc0000481.1_g000003
rosa_roxburghii Rroxscaffold_7G00159740 Rroxscaffold_7G00159750 Rroxscaffold_7G00159760 Rroxscaffold_7G00159770 Rroxscaffold_7G00210810
rosa_rugosa Rorug05G0552200 Rorug05G0552300 Rorug05G0552400
rosa_samantha Rh3CG081000 Rh6AG069300 Rh6AG481300 Rh6AG481600 Rh6BG062000 Rh6BG490400 Rh6BG490500 Rh6BG490600 Rh6CG062100 Rh6CG495700 Rh6CG495900 Rh6DG059100 Rh6DG481600 Rh6DG481700 Rh6DG481800
rosa_wichuraiana Rw6G006090 Rw6G041930 Rw6G041940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 43, 45, 50, 111
AciI CCGC 6 cut(s) 35, 48, 50, 65, 68, 71
AclWI GGATC 1 cut(s) 173
AcoI YGGCCR 3 cut(s) 18, 51, 78
AfiI CCNNNNNNNGG 1 cut(s) 60
AluBI AGCT 1 cut(s) 94
AluI AGCT 1 cut(s) 94
Alw21I GWGCWC 1 cut(s) 120
AlwI GGATC 1 cut(s) 173
AlwNI CAGNNNCTG 1 cut(s) 94
AoxI GGCC 6 cut(s) 18, 51, 72, 78, 156, 248
ApeKI GCWGC 2 cut(s) 88, 91
AspLEI GCGC 6 cut(s) 32, 45, 47, 111, 113, 187
AspS9I GGNCC 1 cut(s) 248
AsuHPI GGTGA 1 cut(s) 121
Bbv12I GWGCWC 1 cut(s) 120
BbvI GCAGC 2 cut(s) 100, 103
BceAI ACGGC 2 cut(s) 98, 254
BglII AGATCT 1 cut(s) 124
BisI GCNGC 7 cut(s) 48, 51, 66, 69, 72, 89, 92
BlsI GCNGC 7 cut(s) 49, 52, 67, 70, 73, 90, 93
BmgT120I GGNCC 1 cut(s) 248
BsaJI CCNNGG 4 cut(s) 48, 75, 81, 236
BsaWI WCCGGW 1 cut(s) 201
Bsc4I CCNNNNNNNGG 1 cut(s) 60
BseDI CCNNGG 4 cut(s) 48, 75, 81, 236
BseLI CCNNNNNNNGG 1 cut(s) 60
BsePI GCGCGC 2 cut(s) 43, 109
BseRI GAGGAG 2 cut(s) 73, 98
BseXI GCAGC 2 cut(s) 100, 103
Bsh1236I CGCG 4 cut(s) 43, 45, 50, 111
BshFI GGCC 6 cut(s) 20, 53, 74, 80, 158, 250
BsiHKAI GWGCWC 1 cut(s) 120
BsiSI CCGG 1 cut(s) 202
BslI CCNNNNNNNGG 1 cut(s) 60
BsnI GGCC 6 cut(s) 20, 53, 74, 80, 158, 250
Bsp1286I GDGCHC 1 cut(s) 120
Bsp143I GATC 2 cut(s) 124, 178
BspACI CCGC 6 cut(s) 35, 48, 50, 65, 68, 71
BspANI GGCC 6 cut(s) 20, 53, 74, 80, 158, 250
BspFNI CGCG 4 cut(s) 43, 45, 50, 111
BspPI GGATC 1 cut(s) 173
BssECI CCNNGG 4 cut(s) 48, 75, 81, 236
BssHII GCGCGC 2 cut(s) 43, 109
BssMI GATC 2 cut(s) 124, 178
BssT1I CCWWGG 1 cut(s) 75
Bst4CI ACNGT 1 cut(s) 16
BstC8I GCNNGC 3 cut(s) 45, 96, 111
BstDEI CTNAG 1 cut(s) 102
BstDSI CCRYGG 2 cut(s) 48, 236
BstFNI CGCG 4 cut(s) 43, 45, 50, 111
BstHHI GCGC 6 cut(s) 32, 45, 47, 111, 113, 187
BstKTI GATC 2 cut(s) 127, 181
BstMBI GATC 2 cut(s) 124, 178
BstMWI GCNNNNNNNGC 4 cut(s) 71, 77, 115, 247
BstUI CGCG 4 cut(s) 43, 45, 50, 111
BstV1I GCAGC 2 cut(s) 100, 103
BstX2I RGATCY 1 cut(s) 124
BstYI RGATCY 1 cut(s) 124
BsuRI GGCC 6 cut(s) 20, 53, 74, 80, 158, 250
BtgI CCRYGG 2 cut(s) 48, 236
BtsIMutI CAGTG 1 cut(s) 12
Cac8I GCNNGC 3 cut(s) 45, 96, 111
CaiI CAGNNNCTG 1 cut(s) 94
CfoI GCGC 6 cut(s) 32, 45, 47, 111, 113, 187
Cfr13I GGNCC 1 cut(s) 248
Cfr42I CCGCGG 1 cut(s) 51
CviAII CATG 1 cut(s) 330
CviJI RGCY 9 cut(s) 5, 20, 53, 74, 80, 94, 158, 241, 250
CviKI_1 RGCY 9 cut(s) 5, 20, 53, 74, 80, 94, 158, 241, 250
DdeI CTNAG 1 cut(s) 102
DpnI GATC 2 cut(s) 126, 180
DpnII GATC 2 cut(s) 124, 178
EaeI YGGCCR 3 cut(s) 18, 51, 78
Eco130I CCWWGG 1 cut(s) 75
Eco32I GATATC 1 cut(s) 265
EcoRV GATATC 1 cut(s) 265
EcoT14I CCWWGG 1 cut(s) 75
ErhI CCWWGG 1 cut(s) 75
FaeI CATG 1 cut(s) 333
FaiI YATR 3 cut(s) 255, 270, 331
FatI CATG 1 cut(s) 329
Fnu4HI GCNGC 7 cut(s) 48, 51, 66, 69, 72, 89, 92
Fsp4HI GCNGC 7 cut(s) 48, 51, 66, 69, 72, 89, 92
GlaI GCGC 6 cut(s) 31, 44, 46, 110, 112, 186
GluI GCNGC 7 cut(s) 48, 51, 66, 69, 72, 89, 92
HaeIII GGCC 6 cut(s) 20, 53, 74, 80, 158, 250
HapII CCGG 1 cut(s) 202
HhaI GCGC 6 cut(s) 32, 45, 47, 111, 113, 187
Hin1II CATG 1 cut(s) 333
Hin6I GCGC 6 cut(s) 30, 43, 45, 109, 111, 185
HinP1I GCGC 6 cut(s) 30, 43, 45, 109, 111, 185
HpaII CCGG 1 cut(s) 202
HphI GGTGA 1 cut(s) 121
Hpy188I TCNGA 3 cut(s) 122, 178, 262
Hpy99I CGWCG 2 cut(s) 149, 152
HpyCH4III ACNGT 1 cut(s) 16
HpyCH4IV ACGT 2 cut(s) 144, 220
HpyCH4V TGCA 1 cut(s) 140
HpyF10VI GCNNNNNNNGC 4 cut(s) 71, 77, 115, 247
HpyF3I CTNAG 1 cut(s) 102
HpySE526I ACGT 2 cut(s) 144, 220
Hsp92II CATG 1 cut(s) 333
HspAI GCGC 6 cut(s) 30, 43, 45, 109, 111, 185
KspI CCGCGG 1 cut(s) 51
Kzo9I GATC 2 cut(s) 124, 178
LmnI GCTCC 2 cut(s) 37, 85
LpnPI CCDG 4 cut(s) 80, 195, 200, 215
Lsp1109I GCAGC 2 cut(s) 100, 103
MaeII ACGT 2 cut(s) 144, 220
MaeIII GTNAC 1 cut(s) 221
MalI GATC 2 cut(s) 126, 180
MboI GATC 2 cut(s) 124, 178
MboII GAAGA 1 cut(s) 269
MflI RGATCY 1 cut(s) 124
MhlI GDGCHC 1 cut(s) 120
MluCI AATT 1 cut(s) 172
MnlI CCTC 5 cut(s) 51, 54, 76, 169, 283
MspA1I CMGCKG 2 cut(s) 50, 94
MspI CCGG 1 cut(s) 202
MvnI CGCG 4 cut(s) 43, 45, 50, 111
MwoI GCNNNNNNNGC 4 cut(s) 71, 77, 115, 247
NdeII GATC 2 cut(s) 124, 178
NlaIII CATG 1 cut(s) 333
NmeAIII GCCGAG 2 cut(s) 46, 106
NmuCI GTSAC 1 cut(s) 221
PauI GCGCGC 2 cut(s) 43, 109
PkrI GCNGC 7 cut(s) 49, 52, 67, 70, 73, 90, 93
PspPI GGNCC 1 cut(s) 248
PstNI CAGNNNCTG 1 cut(s) 94
PsuI RGATCY 1 cut(s) 124
PteI GCGCGC 2 cut(s) 43, 109
PvuII CAGCTG 1 cut(s) 94
SacII CCGCGG 1 cut(s) 51
SatI GCNGC 7 cut(s) 48, 51, 66, 69, 72, 89, 92
Sau3AI GATC 2 cut(s) 124, 178
Sau96I GGNCC 1 cut(s) 248
SduI GDGCHC 1 cut(s) 120
SetI ASST 4 cut(s) 96, 147, 223, 294
Sfr303I CCGCGG 1 cut(s) 51
SgrBI CCGCGG 1 cut(s) 51
Sse9I AATT 1 cut(s) 172
SsiI CCGC 6 cut(s) 35, 48, 50, 65, 68, 71
StyI CCWWGG 1 cut(s) 75
TaaI ACNGT 1 cut(s) 16
TaiI ACGT 2 cut(s) 147, 223
TasI AATT 1 cut(s) 172
TauI GCSGC 5 cut(s) 50, 53, 68, 71, 74
TscAI CASTG 1 cut(s) 19
TseFI GTSAC 1 cut(s) 221
TseI GCWGC 2 cut(s) 88, 91
Tsp45I GTSAC 1 cut(s) 221
TspRI CASTG 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.