Rorug05G0552200

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000541
Physical Location & Seq
Reverse (-)
74024461 .. 74026366
1906 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0552200.1

Sequence Viewer

Length: 1209 bp
ATGTCTAGCTGCGTCGTGGATCTCCCTGAAGATATTATAGTCAAGATTCTGTGCCGTTTGCCGGTCAAGTCTTTGATCCGGTTCACTTGTGTCTCGAAACGGTGGCGTTCTATGATCATTTCCGATCCTCAGTTTGGAAAATCCCACCACCAACTTGCTTCTCAGCAGAGAACCCTCCGTAGAAAAGTCCTCCTCACTACCTACCCTAAACTCAGTGATCCAGGTCCAATTTCCCTTGCTCGTTCCGGTGGCTTTCCGAAGTTACCCCCTCGATTTCAATCGTTAGAGGATAACTTTTCAGTCAAAAATTTTACCATCCCATGTGAGAAGAGTGAGGATATAATAGTAATGGGCTCCTGCAATGGTTTGGCACTTGTAGGCCAAAGCAATCGTTGTTATTTGAAAAACTTGTCTATCTGGAACCTGTCTACTGGATTCTTCCGCAACCTGCCTAGTCCAAGTTTCCCGGAGAGGTCAGTACAATCAGTCGGTAATGAGTACCAGTTCTCTGTAAATTATGGTTTTGGTCATGTGTCCACCATCGACGACTACAAACTTGTTTTCATAATACCTGCCCTCTGTGATCTGCCGGAAGTCCATGTCTTCTCTATGAGAGCCAACATTTGGAAAGTTATTACAGCTCCTTACTCGTCATGGCCGAGATGGCGTGGTGGACAGGGGACACTTTCAAATGAAGCAATTCACTGGGTCATCCGCTGCAAAAATGAGAGTGTTATCTATGCGTTTGATTTGGCAGAGGAGGGATTTCGGCAAGTGCCATTGCCGCCTGTTTTGTGGCAAGATGAAGATGACAAGACTTCCACCGAGATAACAACTCTGGTTCATTTAGGAGGATCCCTTTGCATCTTGTCGCGAAAGCATTATTATCCCGGGAAAGGTGAAGTTTGGGCGATGACAGAGTATGGGGTGCCTGAATCTTGGGTTAAACTCTTTCAATTTGATGTACGCGATCTCCCAGATTTCTTTTCTAGAGTATACGGTCCATGGGATATGTGTTTCATTACAGAAAGCAATATAATCATGTTAAGACGGGATAATGAGTTGTTTTGGTTTGAACGCCGTAATGAAGAGAAACTGATCTGCAGTGGACAGTATAGGATTGAGGAGGTACAACCTGAGGTGCCCGAGTGTTTGTTTTATTTTCACGCAATCGGATATGATGAAACTCTAGTTTCTGTAGCTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

402

Amino Acids

46.26

Weight (kDa)

6.28

Isoelectric Point (pI)

56.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 7 - 42 1.3e-10 F-box domain
F-box-like PF12937 7 - 42 1.5e-08 F-box-like
FBA_3 PF08268 95 - 316 7.9e-11 F-box associated beta propeller domain
FBA_1 PF07734 110 - 378 7.3e-13 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000541)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47210 AT1G47210 AT1G47220 AT1G47230 AT1G47230 AT2G01310 AT5G43080 AT5G43080
fragaria_vesca FvH4_2g04770 FvH4_2g04770 FvH4_2g04770 FvH4_2g33510 FvH4_2g33510 FvH4_2g33510 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33530 FvH4_2g33530
malus_domestica MD05G1092000.v1.1 MD08G1091000.v1.1 MD08G1091200.v1.1 MD10G1100200.v1.1 MD10G1100700.v1.1 MD12G1105600.v1.1 MD15G1075100.v1.1 MD15G1075200.v1.1
prunus_persica Prupe.1G428000_v2.0.a1 Prupe.1G428100_v2.0.a1 Prupe.4G285800_v2.0.a1 Prupe.8G137700_v2.0.a1 Prupe.8G137700_v2.0.a1
pyrus_communis pycom05g09170 pycom08g07360 pycom08g07370 pycom15g07000 pycom15g07020
rosa_chinensis RchiOBHm_Chr3g0465621 RchiOBHm_Chr6g0254421 RchiOBHm_Chr6g0254451 RchiOBHm_Chr6g0308961 RchiOBHm_Chr6g0308971 RchiOBHm_Chr6g0308991 RchiOBHm_Chr7g0190851
rosa_laevigata RLG00000003915 RLG00000010598 RLG00000010599 RLG00000010600 RLG00000014913
rosa_multiflora Rmu_sc0009578.1_g000002 Rmu_sc0009578.1_g000003 Rmu_sc0029942.1_g000001 Rmu_sc0036151.1_g000001 Rmu_sc0036151.1_g000002 Rmu_sc0037719.1_g000001 Rmu_sc0042877.1_g000001 Rmu_ssc0000481.1_g000003
rosa_roxburghii Rroxscaffold_7G00159740 Rroxscaffold_7G00159750 Rroxscaffold_7G00159760 Rroxscaffold_7G00159770 Rroxscaffold_7G00210810
rosa_rugosa Rorug05G0552200 Rorug05G0552300 Rorug05G0552400
rosa_samantha Rh3CG081000 Rh6AG069300 Rh6AG481300 Rh6AG481600 Rh6BG062000 Rh6BG490400 Rh6BG490500 Rh6BG490600 Rh6CG062100 Rh6CG495700 Rh6CG495900 Rh6DG059100 Rh6DG481600 Rh6DG481700 Rh6DG481800
rosa_wichuraiana Rw6G006090 Rw6G041930 Rw6G041940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 456, 580
AccB1I GGYRCC 2 cut(s) 928, 1141
AccB7I CCANNNNNTGG 1 cut(s) 624
AccI GTMKAC 2 cut(s) 428, 996
AccII CGCG 2 cut(s) 874, 969
AciI CCGC 3 cut(s) 442, 715, 785
AclWI GGATC 6 cut(s) 27, 70, 119, 212, 849, 862
AcoI YGGCCR 1 cut(s) 656
AcsI RAATTY 1 cut(s) 307
AcuI CTGAAG 1 cut(s) 48
AfaI GTAC 4 cut(s) 480, 500, 966, 1131
AfiI CCNNNNNNNGG 4 cut(s) 61, 134, 624, 896
AgsI TTSAA 5 cut(s) 278, 403, 690, 956, 1076
AjnI CCWGG 1 cut(s) 220
AluBI AGCT 3 cut(s) 9, 641, 1202
AluI AGCT 3 cut(s) 9, 641, 1202
Alw26I GTCTC 1 cut(s) 97
AlwI GGATC 6 cut(s) 27, 70, 119, 212, 849, 862
Ama87I CYCGRG 2 cut(s) 890, 1145
AoxI GGCC 2 cut(s) 379, 656
ApeKI GCWGC 2 cut(s) 9, 717
ApoI RAATTY 1 cut(s) 307
Asp700I GAANNNNTTC 1 cut(s) 699
AspS9I GGNCC 2 cut(s) 224, 1001
AsuC2I CCSGG 3 cut(s) 467, 891, 892
AsuHPI GGTGA 1 cut(s) 911
AvaI CYCGRG 2 cut(s) 890, 1145
AvaII GGWCC 2 cut(s) 224, 1001
AxyI CCTNAGG 1 cut(s) 1137
BaeGI GKGCMC 1 cut(s) 1146
BamHI GGATCC 1 cut(s) 854
BanI GGYRCC 2 cut(s) 928, 1141
BanII GRGCYC 1 cut(s) 356
BbsI GAAGAC 1 cut(s) 595
BbvI GCAGC 1 cut(s) 704
BccI CCATC 3 cut(s) 323, 548, 657
BceAI ACGGC 2 cut(s) 39, 1065
BciT130I CCWGG 1 cut(s) 222
BclI TGATCA 1 cut(s) 114
BcnI CCSGG 3 cut(s) 467, 891, 892
BcoDI GTCTC 1 cut(s) 97
BfaI CTAG 4 cut(s) 6, 453, 990, 1190
BfmI CTRYAG 2 cut(s) 1102, 1197
BfuAI ACCTGC 2 cut(s) 456, 580
BglI GCCNNNNNGGC 1 cut(s) 664
BisI GCNGC 3 cut(s) 10, 718, 785
BlsI GCNGC 3 cut(s) 11, 719, 786
Bme1390I CCNGG 4 cut(s) 222, 467, 891, 892
Bme18I GGWCC 2 cut(s) 224, 1001
BmeT110I CYCGRG 2 cut(s) 890, 1145
BmgT120I GGNCC 2 cut(s) 224, 1001
BmiI GGNNCC 5 cut(s) 355, 422, 856, 930, 1143
BmrFI CCNGG 4 cut(s) 222, 467, 891, 892
BmrI ACTGGG 1 cut(s) 715
BmsI GCATC 1 cut(s) 873
BmuI ACTGGG 1 cut(s) 715
BpiI GAAGAC 1 cut(s) 595
BpuMI CCSGG 3 cut(s) 467, 891, 892
BsaBI GATNNNNATC 1 cut(s) 277
BsaJI CCNNGG 2 cut(s) 890, 1004
BsaWI WCCGGW 2 cut(s) 78, 245
BsaXI ACNNNNNCTCC 2 cut(s) 957, 987
Bsc4I CCNNNNNNNGG 4 cut(s) 61, 134, 624, 896
Bse118I RCCGGY 1 cut(s) 61
Bse1I ACTGG 3 cut(s) 436, 502, 710
Bse21I CCTNAGG 1 cut(s) 1137
Bse3DI GCAATG 2 cut(s) 367, 779
Bse8I GATNNNNATC 1 cut(s) 277
BseBI CCWGG 1 cut(s) 222
BseDI CCNNGG 2 cut(s) 890, 1004
BseGI GGATG 2 cut(s) 315, 711
BseJI GATNNNNATC 1 cut(s) 277
BseLI CCNNNNNNNGG 4 cut(s) 61, 134, 624, 896
BseMI GCAATG 2 cut(s) 367, 779
BseMII CTCAG 4 cut(s) 143, 176, 226, 1128
BseNI ACTGG 3 cut(s) 436, 502, 710
BseRI GAGGAG 3 cut(s) 182, 773, 1139
BseSI GKGCMC 1 cut(s) 1146
BseXI GCAGC 1 cut(s) 704
Bsh1236I CGCG 2 cut(s) 874, 969
BshFI GGCC 2 cut(s) 381, 658
BshNI GGYRCC 2 cut(s) 928, 1141
BsiHKCI CYCGRG 2 cut(s) 890, 1145
BsiSI CCGG 6 cut(s) 62, 79, 246, 467, 590, 891
BslFI GGGAC 1 cut(s) 694
BslI CCNNNNNNNGG 4 cut(s) 61, 134, 624, 896
BsmAI GTCTC 1 cut(s) 97
BsmFI GGGAC 1 cut(s) 694
BsnI GGCC 2 cut(s) 381, 658
BsoBI CYCGRG 2 cut(s) 890, 1145
Bsp1286I GDGCHC 2 cut(s) 356, 1146
Bsp143I GATC 9 cut(s) 19, 75, 114, 124, 217, 583, 854, 970, 1098
Bsp19I CCATGG 1 cut(s) 1004
Bsp68I TCGCGA 1 cut(s) 874
BspACI CCGC 3 cut(s) 442, 715, 785
BspANI GGCC 2 cut(s) 381, 658
BspCNI CTCAG 4 cut(s) 142, 175, 225, 1129
BspFNI CGCG 2 cut(s) 874, 969
BspLI GGNNCC 5 cut(s) 355, 422, 856, 930, 1143
BspMAI CTGCAG 1 cut(s) 1106
BspMI ACCTGC 2 cut(s) 456, 580
BspPI GGATC 6 cut(s) 27, 70, 119, 212, 849, 862
BspT107I GGYRCC 2 cut(s) 928, 1141
BsrDI GCAATG 2 cut(s) 367, 779
BsrFI RCCGGY 1 cut(s) 61
BsrI ACTGG 3 cut(s) 436, 502, 710
BssAI RCCGGY 1 cut(s) 61
BssECI CCNNGG 2 cut(s) 890, 1004
BssMI GATC 9 cut(s) 19, 75, 114, 124, 217, 583, 854, 970, 1098
BssNAI GTATAC 1 cut(s) 997
BssT1I CCWWGG 1 cut(s) 1004
Bst1107I GTATAC 1 cut(s) 997
Bst2UI CCWGG 1 cut(s) 222
Bst4CI ACNGT 3 cut(s) 102, 1001, 1113
Bst6I CTCTTC 2 cut(s) 323, 1083
BstDEI CTNAG 4 cut(s) 129, 162, 212, 1137
BstDSI CCRYGG 1 cut(s) 1004
BstF5I GGATG 2 cut(s) 315, 711
BstFNI CGCG 2 cut(s) 874, 969
BstKTI GATC 9 cut(s) 22, 78, 117, 127, 220, 586, 857, 973, 1101
BstMAI GTCTC 1 cut(s) 97
BstMBI GATC 9 cut(s) 19, 75, 114, 124, 217, 583, 854, 970, 1098
BstMWI GCNNNNNNNGC 2 cut(s) 664, 784
BstNI CCWGG 1 cut(s) 222
BstSCI CCNGG 4 cut(s) 220, 465, 889, 890
BstSFI CTRYAG 2 cut(s) 1102, 1197
BstSLI GKGCMC 1 cut(s) 1146
BstUI CGCG 2 cut(s) 874, 969
BstV1I GCAGC 1 cut(s) 704
BstV2I GAAGAC 1 cut(s) 595
BstX2I RGATCY 2 cut(s) 19, 854
BstYI RGATCY 2 cut(s) 19, 854
BstZ17I GTATAC 1 cut(s) 997
Bsu36I CCTNAGG 1 cut(s) 1137
BsuRI GGCC 2 cut(s) 381, 658
BtgI CCRYGG 1 cut(s) 1004
BtgZI GCGATG 1 cut(s) 926
BtsCI GGATG 2 cut(s) 315, 711
BtsI GCAGTG 1 cut(s) 1111
BtsIMutI CAGTG 3 cut(s) 220, 703, 1111
BtuMI TCGCGA 1 cut(s) 874
BveI ACCTGC 2 cut(s) 456, 580
Cfr10I RCCGGY 1 cut(s) 61
Cfr13I GGNCC 2 cut(s) 224, 1001
Cfr9I CCCGGG 1 cut(s) 890
Csp6I GTAC 4 cut(s) 479, 499, 965, 1130
CviAII CATG 6 cut(s) 321, 530, 599, 654, 1005, 1042
CviJI RGCY 8 cut(s) 9, 252, 354, 381, 617, 641, 658, 1202
CviKI_1 RGCY 8 cut(s) 9, 252, 354, 381, 617, 641, 658, 1202
CviQI GTAC 4 cut(s) 479, 499, 965, 1130
DdeI CTNAG 4 cut(s) 129, 162, 212, 1137
DpnI GATC 9 cut(s) 21, 77, 116, 126, 219, 585, 856, 972, 1100
DpnII GATC 9 cut(s) 19, 75, 114, 124, 217, 583, 854, 970, 1098
EaeI YGGCCR 1 cut(s) 656
Eam1104I CTCTTC 2 cut(s) 323, 1083
EarI CTCTTC 2 cut(s) 323, 1083
Eco130I CCWWGG 1 cut(s) 1004
Eco24I GRGCYC 1 cut(s) 356
Eco47I GGWCC 2 cut(s) 224, 1001
Eco57I CTGAAG 1 cut(s) 48
Eco81I CCTNAGG 1 cut(s) 1137
Eco88I CYCGRG 2 cut(s) 890, 1145
EcoRII CCWGG 1 cut(s) 220
EcoT14I CCWWGG 1 cut(s) 1004
EcoT38I GRGCYC 1 cut(s) 356
ErhI CCWWGG 1 cut(s) 1004
FaeI CATG 6 cut(s) 324, 533, 602, 657, 1008, 1045
FaqI GGGAC 1 cut(s) 694
FatI CATG 6 cut(s) 320, 529, 598, 653, 1004, 1041
FbaI TGATCA 1 cut(s) 114
FblI GTMKAC 2 cut(s) 428, 996
Fnu4HI GCNGC 3 cut(s) 10, 718, 785
FokI GGATG 2 cut(s) 302, 698
FriOI GRGCYC 1 cut(s) 356
Fsp4HI GCNGC 3 cut(s) 10, 718, 785
FspBI CTAG 4 cut(s) 6, 453, 990, 1190
GluI GCNGC 3 cut(s) 10, 718, 785
HaeIII GGCC 2 cut(s) 381, 658
HapII CCGG 6 cut(s) 62, 79, 246, 467, 590, 891
Hin1II CATG 6 cut(s) 324, 533, 602, 657, 1008, 1045
HinfI GANTC 3 cut(s) 46, 435, 935
HpaII CCGG 6 cut(s) 62, 79, 246, 467, 590, 891
HphI GGTGA 1 cut(s) 911
Hpy166II GTNNAC 6 cut(s) 84, 429, 537, 674, 997, 1109
Hpy188I TCNGA 3 cut(s) 124, 258, 1175
Hpy188III TCNNGA 5 cut(s) 43, 94, 418, 873, 990
Hpy8I GTNNAC 6 cut(s) 84, 429, 537, 674, 997, 1109
Hpy99I CGWCG 2 cut(s) 17, 548
HpyCH4III ACNGT 3 cut(s) 102, 1001, 1113
HpyCH4V TGCA 4 cut(s) 360, 720, 864, 1104
HpyF10VI GCNNNNNNNGC 2 cut(s) 664, 784
HpyF3I CTNAG 4 cut(s) 129, 162, 212, 1137
Hsp92II CATG 6 cut(s) 324, 533, 602, 657, 1008, 1045
Ksp22I TGATCA 1 cut(s) 114
Kzo9I GATC 9 cut(s) 19, 75, 114, 124, 217, 583, 854, 970, 1098
LmnI GCTCC 2 cut(s) 359, 646
Lsp1109I GCAGC 1 cut(s) 704
LweI GCATC 1 cut(s) 873
MaeI CTAG 4 cut(s) 6, 453, 990, 1190
MaeIII GTNAC 1 cut(s) 261
MalI GATC 9 cut(s) 21, 77, 116, 126, 219, 585, 856, 972, 1100
MboI GATC 9 cut(s) 19, 75, 114, 124, 217, 583, 854, 970, 1098
MboII GAAGA 6 cut(s) 41, 340, 430, 595, 818, 1100
MflI RGATCY 2 cut(s) 19, 854
MhlI GDGCHC 2 cut(s) 356, 1146
MluCI AATT 5 cut(s) 228, 307, 514, 699, 956
MroXI GAANNNNTTC 1 cut(s) 699
MseI TTAA 2 cut(s) 945, 1046
MspA1I CMGCKG 1 cut(s) 717
MspI CCGG 6 cut(s) 62, 79, 246, 467, 590, 891
MspR9I CCNGG 4 cut(s) 222, 467, 891, 892
MvaI CCWGG 1 cut(s) 222
MvnI CGCG 2 cut(s) 874, 969
MwoI GCNNNNNNNGC 2 cut(s) 664, 784
NciI CCSGG 3 cut(s) 467, 891, 892
NcoI CCATGG 1 cut(s) 1004
NdeII GATC 9 cut(s) 19, 75, 114, 124, 217, 583, 854, 970, 1098
NlaIII CATG 6 cut(s) 324, 533, 602, 657, 1008, 1045
NlaIV GGNNCC 5 cut(s) 355, 422, 856, 930, 1143
NmeAIII GCCGAG 1 cut(s) 684
NruI TCGCGA 1 cut(s) 874
PcsI WCGNNNNNNNCGW 1 cut(s) 656
PdmI GAANNNNTTC 1 cut(s) 699
PfeI GAWTC 3 cut(s) 46, 435, 935
PflMI CCANNNNNTGG 1 cut(s) 624
PfoI TCCNGGA 1 cut(s) 465
PkrI GCNGC 3 cut(s) 11, 719, 786
Psp6I CCWGG 1 cut(s) 220
PspGI CCWGG 1 cut(s) 220
PspN4I GGNNCC 5 cut(s) 355, 422, 856, 930, 1143
PspPI GGNCC 2 cut(s) 224, 1001
PstI CTGCAG 1 cut(s) 1106
PsuI RGATCY 2 cut(s) 19, 854
RruI TCGCGA 1 cut(s) 874
RsaI GTAC 4 cut(s) 480, 500, 966, 1131
RsaNI GTAC 4 cut(s) 479, 499, 965, 1130
SaqAI TTAA 2 cut(s) 945, 1046
SatI GCNGC 3 cut(s) 10, 718, 785
Sau3AI GATC 9 cut(s) 19, 75, 114, 124, 217, 583, 854, 970, 1098
Sau96I GGNCC 2 cut(s) 224, 1001
ScrFI CCNGG 4 cut(s) 222, 467, 891, 892
SduI GDGCHC 2 cut(s) 356, 1146
SfaNI GCATC 1 cut(s) 873
SfcI CTRYAG 2 cut(s) 1102, 1197
SinI GGWCC 2 cut(s) 224, 1001
SmaI CCCGGG 1 cut(s) 892
Sse9I AATT 5 cut(s) 228, 307, 514, 699, 956
SsiI CCGC 3 cut(s) 442, 715, 785
SspMI CTAG 4 cut(s) 6, 453, 990, 1190
StyD4I CCNGG 4 cut(s) 220, 465, 889, 890
StyI CCWWGG 1 cut(s) 1004
TaaI ACNGT 3 cut(s) 102, 1001, 1113
TaqI TCGA 3 cut(s) 95, 271, 543
TasI AATT 5 cut(s) 228, 307, 514, 699, 956
TatI WGTACW 1 cut(s) 478
TauI GCSGC 1 cut(s) 787
TfiI GAWTC 3 cut(s) 46, 435, 935
Tru1I TTAA 2 cut(s) 945, 1046
Tru9I TTAA 2 cut(s) 945, 1046
TscAI CASTG 3 cut(s) 220, 710, 1111
TseI GCWGC 2 cut(s) 9, 717
TspDTI ATGAA 7 cut(s) 553, 708, 819, 833, 1009, 1101, 1197
TspGWI ACGGA 1 cut(s) 167
TspMI CCCGGG 1 cut(s) 890
TspRI CASTG 3 cut(s) 220, 710, 1111
Van91I CCANNNNNTGG 1 cut(s) 624
VpaK11BI GGWCC 2 cut(s) 224, 1001
XapI RAATTY 1 cut(s) 307
XbaI TCTAGA 1 cut(s) 989
XmaI CCCGGG 1 cut(s) 890
XmiI GTMKAC 2 cut(s) 428, 996
XmnI GAANNNNTTC 1 cut(s) 699
XspI CTAG 4 cut(s) 6, 453, 990, 1190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.