Rmu_sc0009578.1_g000002

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009578.1
OG0000541
Physical Location & Seq
Forward (+)
1835 .. 2810
976 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009578.1_g000002.1.cds

Sequence Viewer

Length: 537 bp
atgtgcgacgaaggaaacggcgtctacaccacgcgctcgacgaagaagcgagcctcggcggcggaggctctgaaagctccggcgtccaaaaagcagcgatccgtactgggagagatcaccaactcgcaggatctagtttcggttccgaaatcggcaccgaagaaacccaaaattgagtcgcagaaggagaagaagaaggaagaggaggagggactcgagacggagattggtgtgagctcgattgatccggtcaaatgtgcttactcgccttctatgtataagcatcttcataaattggaggtggaggtgaagaatagaccattatgtggttacatggagaaggtgcagaattgtatttcagaacacatgcgagaagtcctggtggattggttggtggaggttgcggaggaatacaagtttgtttcagacaccctttatcttaccgtatcatatatcgacagatacctttcttcacacgttatcagcaagaacaagctacagcttcttggtgttgcgtgcatgtttgttgcctcgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

178

Amino Acids

20.0

Weight (kDa)

8.18

Isoelectric Point (pI)

52.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000541)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47210 AT1G47210 AT1G47220 AT1G47230 AT1G47230 AT2G01310 AT5G43080 AT5G43080
fragaria_vesca FvH4_2g04770 FvH4_2g04770 FvH4_2g04770 FvH4_2g33510 FvH4_2g33510 FvH4_2g33510 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33530 FvH4_2g33530
malus_domestica MD05G1092000.v1.1 MD08G1091000.v1.1 MD08G1091200.v1.1 MD10G1100200.v1.1 MD10G1100700.v1.1 MD12G1105600.v1.1 MD15G1075100.v1.1 MD15G1075200.v1.1
prunus_persica Prupe.1G428000_v2.0.a1 Prupe.1G428100_v2.0.a1 Prupe.4G285800_v2.0.a1 Prupe.8G137700_v2.0.a1 Prupe.8G137700_v2.0.a1
pyrus_communis pycom05g09170 pycom08g07360 pycom08g07370 pycom15g07000 pycom15g07020
rosa_chinensis RchiOBHm_Chr3g0465621 RchiOBHm_Chr6g0254421 RchiOBHm_Chr6g0254451 RchiOBHm_Chr6g0308961 RchiOBHm_Chr6g0308971 RchiOBHm_Chr6g0308991 RchiOBHm_Chr7g0190851
rosa_laevigata RLG00000003915 RLG00000010598 RLG00000010599 RLG00000010600 RLG00000014913
rosa_multiflora Rmu_sc0009578.1_g000002 Rmu_sc0009578.1_g000003 Rmu_sc0029942.1_g000001 Rmu_sc0036151.1_g000001 Rmu_sc0036151.1_g000002 Rmu_sc0037719.1_g000001 Rmu_sc0042877.1_g000001 Rmu_ssc0000481.1_g000003
rosa_roxburghii Rroxscaffold_7G00159740 Rroxscaffold_7G00159750 Rroxscaffold_7G00159760 Rroxscaffold_7G00159770 Rroxscaffold_7G00210810
rosa_rugosa Rorug05G0552200 Rorug05G0552300 Rorug05G0552400
rosa_samantha Rh3CG081000 Rh6AG069300 Rh6AG481300 Rh6AG481600 Rh6BG062000 Rh6BG490400 Rh6BG490500 Rh6BG490600 Rh6CG062100 Rh6CG495700 Rh6CG495900 Rh6DG059100 Rh6DG481600 Rh6DG481700 Rh6DG481800
rosa_wichuraiana Rw6G006090 Rw6G041930 Rw6G041940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 154
AccB7I CCANNNNNTGG 1 cut(s) 326
AccI GTMKAC 1 cut(s) 24
AccII CGCG 1 cut(s) 34
AciI CCGC 3 cut(s) 59, 62, 404
AclWI GGATC 3 cut(s) 93, 138, 239
AcyI GRCGYC 2 cut(s) 21, 83
AfaI GTAC 1 cut(s) 105
AfiI CCNNNNNNNGG 1 cut(s) 326
AflIII ACRYGT 1 cut(s) 475
AjnI CCWGG 1 cut(s) 378
AluBI AGCT 4 cut(s) 77, 237, 496, 502
AluI AGCT 4 cut(s) 77, 237, 496, 502
Alw21I GWGCWC 1 cut(s) 239
Alw26I GTCTC 1 cut(s) 212
AlwI GGATC 3 cut(s) 93, 138, 239
Ama87I CYCGRG 1 cut(s) 215
ApeKI GCWGC 1 cut(s) 94
AspLEI GCGC 1 cut(s) 36
AsuHPI GGTGA 2 cut(s) 109, 319
AvaI CYCGRG 1 cut(s) 215
BanI GGYRCC 1 cut(s) 154
BanII GRGCYC 1 cut(s) 239
Bbv12I GWGCWC 1 cut(s) 239
BbvI GCAGC 1 cut(s) 106
BceAI ACGGC 1 cut(s) 34
BciT130I CCWGG 1 cut(s) 380
BcoDI GTCTC 1 cut(s) 212
BfaI CTAG 1 cut(s) 134
BfmI CTRYAG 1 cut(s) 497
BglI GCCNNNNNGGC 1 cut(s) 59
BisI GCNGC 2 cut(s) 60, 95
BlsI GCNGC 2 cut(s) 61, 96
Bme1390I CCNGG 1 cut(s) 380
BmeT110I CYCGRG 1 cut(s) 215
BmiI GGNNCC 2 cut(s) 144, 156
BmrFI CCNGG 1 cut(s) 380
BmrI ACTGGG 1 cut(s) 116
BmsI GCATC 1 cut(s) 292
BmuI ACTGGG 1 cut(s) 116
BsaHI GRCGYC 2 cut(s) 21, 83
BsaJI CCNNGG 1 cut(s) 54
BsaWI WCCGGW 1 cut(s) 247
Bsc4I CCNNNNNNNGG 1 cut(s) 326
Bse1I ACTGG 1 cut(s) 111
BseBI CCWGG 1 cut(s) 380
BseDI CCNNGG 1 cut(s) 54
BseLI CCNNNNNNNGG 1 cut(s) 326
BseNI ACTGG 1 cut(s) 111
BseRI GAGGAG 2 cut(s) 218, 221
BseXI GCAGC 1 cut(s) 106
BsgI GTGCAG 1 cut(s) 365
Bsh1236I CGCG 1 cut(s) 34
BshNI GGYRCC 1 cut(s) 154
BsiHKAI GWGCWC 1 cut(s) 239
BsiHKCI CYCGRG 1 cut(s) 215
BsiSI CCGG 2 cut(s) 80, 248
BslFI GGGAC 1 cut(s) 225
BslI CCNNNNNNNGG 1 cut(s) 326
BsmAI GTCTC 1 cut(s) 212
BsmBI CGTCTC 1 cut(s) 212
BsmFI GGGAC 1 cut(s) 225
BsoBI CYCGRG 1 cut(s) 215
Bsp1286I GDGCHC 1 cut(s) 239
Bsp143I GATC 4 cut(s) 98, 114, 130, 244
BspACI CCGC 3 cut(s) 59, 62, 404
BspFNI CGCG 1 cut(s) 34
BspLI GGNNCC 2 cut(s) 144, 156
BspPI GGATC 3 cut(s) 93, 138, 239
BspT107I GGYRCC 1 cut(s) 154
BsrI ACTGG 1 cut(s) 111
BssECI CCNNGG 1 cut(s) 54
BssMI GATC 4 cut(s) 98, 114, 130, 244
BssNI GRCGYC 2 cut(s) 21, 83
Bst2UI CCWGG 1 cut(s) 380
Bst4CI ACNGT 1 cut(s) 445
Bst6I CTCTTC 1 cut(s) 195
BstACI GRCGYC 2 cut(s) 21, 83
BstC8I GCNNGC 2 cut(s) 51, 517
BstFNI CGCG 1 cut(s) 34
BstHHI GCGC 1 cut(s) 36
BstKTI GATC 4 cut(s) 101, 117, 133, 247
BstMAI GTCTC 1 cut(s) 212
BstMBI GATC 4 cut(s) 98, 114, 130, 244
BstMWI GCNNNNNNNGC 3 cut(s) 59, 65, 74
BstNI CCWGG 1 cut(s) 380
BstNSI RCATGY 2 cut(s) 370, 523
BstSCI CCNGG 1 cut(s) 378
BstSFI CTRYAG 1 cut(s) 497
BstUI CGCG 1 cut(s) 34
BstV1I GCAGC 1 cut(s) 106
BstX2I RGATCY 1 cut(s) 130
BstYI RGATCY 1 cut(s) 130
Cac8I GCNNGC 2 cut(s) 51, 517
CfoI GCGC 1 cut(s) 36
CseI GACGC 2 cut(s) 10, 72
Csp6I GTAC 1 cut(s) 104
CviAII CATG 3 cut(s) 334, 367, 520
CviJI RGCY 6 cut(s) 53, 68, 77, 237, 496, 502
CviKI_1 RGCY 6 cut(s) 53, 68, 77, 237, 496, 502
CviQI GTAC 1 cut(s) 104
DpnI GATC 4 cut(s) 100, 116, 132, 246
DpnII GATC 4 cut(s) 98, 114, 130, 244
Eam1104I CTCTTC 1 cut(s) 195
EarI CTCTTC 1 cut(s) 195
EciI GGCGGA 1 cut(s) 77
Ecl136II GAGCTC 1 cut(s) 237
Eco24I GRGCYC 1 cut(s) 239
Eco53kI GAGCTC 1 cut(s) 237
Eco88I CYCGRG 1 cut(s) 215
EcoICRI GAGCTC 1 cut(s) 237
EcoRII CCWGG 1 cut(s) 378
EcoT38I GRGCYC 1 cut(s) 239
Esp3I CGTCTC 1 cut(s) 212
FaeI CATG 3 cut(s) 337, 370, 523
FaiI YATR 9 cut(s) 275, 279, 291, 325, 335, 368, 451, 453, 521
FaqI GGGAC 1 cut(s) 225
FatI CATG 3 cut(s) 333, 366, 519
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 2 cut(s) 60, 95
FriOI GRGCYC 1 cut(s) 239
Fsp4HI GCNGC 2 cut(s) 60, 95
FspBI CTAG 1 cut(s) 134
GlaI GCGC 1 cut(s) 35
GluI GCNGC 2 cut(s) 60, 95
HapII CCGG 2 cut(s) 80, 248
HgaI GACGC 2 cut(s) 10, 72
HhaI GCGC 1 cut(s) 36
Hin1I GRCGYC 2 cut(s) 21, 83
Hin1II CATG 3 cut(s) 337, 370, 523
Hin6I GCGC 1 cut(s) 34
HinP1I GCGC 1 cut(s) 34
HinfI GANTC 2 cut(s) 176, 213
HpaII CCGG 2 cut(s) 80, 248
HphI GGTGA 2 cut(s) 109, 319
Hpy166II GTNNAC 1 cut(s) 25
Hpy188I TCNGA 4 cut(s) 72, 147, 361, 427
Hpy188III TCNNGA 1 cut(s) 217
Hpy8I GTNNAC 1 cut(s) 25
Hpy99I CGWCG 2 cut(s) 11, 43
HpyAV CCTTC 5 cut(s) 5, 178, 190, 279, 334
HpyCH4III ACNGT 1 cut(s) 445
HpyCH4IV ACGT 1 cut(s) 477
HpyCH4V TGCA 2 cut(s) 346, 519
HpyF10VI GCNNNNNNNGC 3 cut(s) 59, 65, 74
HpySE526I ACGT 1 cut(s) 477
Hsp92I GRCGYC 2 cut(s) 21, 83
Hsp92II CATG 3 cut(s) 337, 370, 523
HspAI GCGC 1 cut(s) 34
Kzo9I GATC 4 cut(s) 98, 114, 130, 244
LmnI GCTCC 1 cut(s) 82
LpnPI CCDG 6 cut(s) 92, 93, 113, 261, 365, 392
Lsp1109I GCAGC 1 cut(s) 106
LweI GCATC 1 cut(s) 292
MaeI CTAG 1 cut(s) 134
MaeII ACGT 1 cut(s) 477
MaeIII GTNAC 1 cut(s) 329
MalI GATC 4 cut(s) 100, 116, 132, 246
MboI GATC 4 cut(s) 98, 114, 130, 244
MboII GAAGA 8 cut(s) 55, 172, 202, 205, 212, 278, 322, 462
MflI RGATCY 1 cut(s) 130
MhlI GDGCHC 1 cut(s) 239
MluCI AATT 3 cut(s) 171, 293, 349
MlyI GAGTC 2 cut(s) 185, 207
MnlI CCTC 9 cut(s) 58, 64, 196, 199, 202, 292, 298, 391, 400
MspI CCGG 2 cut(s) 80, 248
MspR9I CCNGG 1 cut(s) 380
MvaI CCWGG 1 cut(s) 380
MvnI CGCG 1 cut(s) 34
MwoI GCNNNNNNNGC 3 cut(s) 59, 65, 74
NdeII GATC 4 cut(s) 98, 114, 130, 244
NlaIII CATG 3 cut(s) 337, 370, 523
NlaIV GGNNCC 2 cut(s) 144, 156
NmeAIII GCCGAG 1 cut(s) 35
NspI RCATGY 2 cut(s) 370, 523
PaeR7I CTCGAG 1 cut(s) 215
PcsI WCGNNNNNNNCGW 1 cut(s) 38
PflMI CCANNNNNTGG 1 cut(s) 326
PkrI GCNGC 2 cut(s) 61, 96
PleI GAGTC 2 cut(s) 184, 207
PpsI GAGTC 2 cut(s) 184, 207
Psp124BI GAGCTC 1 cut(s) 239
Psp6I CCWGG 1 cut(s) 378
PspGI CCWGG 1 cut(s) 378
PspN4I GGNNCC 2 cut(s) 144, 156
PsuI RGATCY 1 cut(s) 130
RsaI GTAC 1 cut(s) 105
RsaNI GTAC 1 cut(s) 104
SacI GAGCTC 1 cut(s) 239
SatI GCNGC 2 cut(s) 60, 95
Sau3AI GATC 4 cut(s) 98, 114, 130, 244
SchI GAGTC 2 cut(s) 185, 207
ScrFI CCNGG 1 cut(s) 380
SduI GDGCHC 1 cut(s) 239
SfaNI GCATC 1 cut(s) 292
SfcI CTRYAG 1 cut(s) 497
Sfr274I CTCGAG 1 cut(s) 215
SlaI CTCGAG 1 cut(s) 215
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
Sse9I AATT 3 cut(s) 171, 293, 349
SsiI CCGC 3 cut(s) 59, 62, 404
SspMI CTAG 1 cut(s) 134
SstI GAGCTC 1 cut(s) 239
StyD4I CCNGG 1 cut(s) 378
TaaI ACNGT 1 cut(s) 445
TaiI ACGT 1 cut(s) 480
TaqI TCGA 4 cut(s) 38, 216, 239, 456
TasI AATT 3 cut(s) 171, 293, 349
TauI GCSGC 1 cut(s) 62
TseI GCWGC 1 cut(s) 94
TspDTI ATGAA 1 cut(s) 278
TspGWI ACGGA 2 cut(s) 91, 236
Van91I CCANNNNNTGG 1 cut(s) 326
XceI RCATGY 2 cut(s) 370, 523
XhoI CTCGAG 1 cut(s) 215
XmiI GTMKAC 1 cut(s) 24
XspI CTAG 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.