MD08G1091000.v1.1

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0000541
Physical Location & Seq
Forward (+)
7520044 .. 7522498
2455 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1091000.v1.1.491

Sequence Viewer

Length: 1086 bp
ATGGTCTCTACCACTGTGGCGGAGCAAGTGAACTGCAGTCGGATCACCACTCGCGCAGCTGCCAAGAGGAGGGCGATGGCACCCTTGACGGAGGACAACCATTTGACTAATAAGAAGCGCCCGGTGCTCGGAGACGTTACGAATGTGGTTAGCGTCGGCGTTTCAGGGAACTCTAAACGGGTTGAGCTGCAGAAACCGAGTTGCTTGACCGAGAAGGAAAAAAGGGCCGAGGCGGCGCGTGAGTTGGAGGACCCTCAGCTTTGTGGGCCGTACGCCTCCGACATTTATGCCTACCTCCGCCGTATGGAGGCGGAGCCGAGAAGAAGACCGATGCCTGATTACATGGAGAAGGTTCAGAAGGATGCAAATGCTAACATGAGAGCGGTGCTTGTGGATTGGTTGGTGGAGGTTTCAGAGGAATACAAGCTCCTCCCAGAGACTCTTTATCTCTCCATTTCTCACATTGATCGATTTCTCTCAATGAATGTCGTCCACAAGCAGAAGCTTCAGCTCCTCGGAGTTTCTTCAATCTTCATTGCCTCGAAATATGAAGAGATTGATCCTCCTAATGTGGATGAGCTCTGTGACATAACTGAAAATACATACAAAAAAGAAGAGGTGATCAAGATGGAGGCTGATATACTCAAATCCCTAAAATTTGAAATGGGCAATCCGACTACTCGGACCTTTTTAAGAAAATTCACTGATGTTGCTCAAGATAGTTACAAAACTCCCATTGTGCAGTTAGAATTCTTGGTTGCCTACCTTGCCGAGCTGAGTTTGTTGGATTACAAGCTTGTCAAATTCCTGCCTTCTTTGGTAGCTGCATCAGCTGTTTTTCTGGCAAGATTTATGACTCAAACAAAAACACATCCTTGGTGTCCAGAGCTGCAACAGTATACCGGATATAAGGCAGCTGATTTGAAAGAATGTGTTGTTGCCATACATGACATGTGCTTGGGAAGAAGAGCAAGAAATTTGAATGTTATTCAAGAGAAATACAAACAACCTAAGTTCAAACAAGTGGCACATATTCCTTGCCCTCAAGAAATACCAGTTCATTTCTTTCAAGATCTGAAAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

362

Amino Acids

41.31

Weight (kDa)

8.46

Isoelectric Point (pI)

52.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 94 - 222 8.5e-45 Cyclin, N-terminal domain
Cyclin_C PF02984 225 - 348 7.5e-35 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000541)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47210 AT1G47210 AT1G47220 AT1G47230 AT1G47230 AT2G01310 AT5G43080 AT5G43080
fragaria_vesca FvH4_2g04770 FvH4_2g04770 FvH4_2g04770 FvH4_2g33510 FvH4_2g33510 FvH4_2g33510 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33530 FvH4_2g33530
malus_domestica MD05G1092000.v1.1 MD08G1091000.v1.1 MD08G1091200.v1.1 MD10G1100200.v1.1 MD10G1100700.v1.1 MD12G1105600.v1.1 MD15G1075100.v1.1 MD15G1075200.v1.1
prunus_persica Prupe.1G428000_v2.0.a1 Prupe.1G428100_v2.0.a1 Prupe.4G285800_v2.0.a1 Prupe.8G137700_v2.0.a1 Prupe.8G137700_v2.0.a1
pyrus_communis pycom05g09170 pycom08g07360 pycom08g07370 pycom15g07000 pycom15g07020
rosa_chinensis RchiOBHm_Chr3g0465621 RchiOBHm_Chr6g0254421 RchiOBHm_Chr6g0254451 RchiOBHm_Chr6g0308961 RchiOBHm_Chr6g0308971 RchiOBHm_Chr6g0308991 RchiOBHm_Chr7g0190851
rosa_laevigata RLG00000003915 RLG00000010598 RLG00000010599 RLG00000010600 RLG00000014913
rosa_multiflora Rmu_sc0009578.1_g000002 Rmu_sc0009578.1_g000003 Rmu_sc0029942.1_g000001 Rmu_sc0036151.1_g000001 Rmu_sc0036151.1_g000002 Rmu_sc0037719.1_g000001 Rmu_sc0042877.1_g000001 Rmu_ssc0000481.1_g000003
rosa_roxburghii Rroxscaffold_7G00159740 Rroxscaffold_7G00159750 Rroxscaffold_7G00159760 Rroxscaffold_7G00159770 Rroxscaffold_7G00210810
rosa_rugosa Rorug05G0552200 Rorug05G0552300 Rorug05G0552400
rosa_samantha Rh3CG081000 Rh6AG069300 Rh6AG481300 Rh6AG481600 Rh6BG062000 Rh6BG490400 Rh6BG490500 Rh6BG490600 Rh6CG062100 Rh6CG495700 Rh6CG495900 Rh6DG059100 Rh6DG481600 Rh6DG481700 Rh6DG481800
rosa_wichuraiana Rw6G006090 Rw6G041930 Rw6G041940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 79
AccBSI CCGCTC 1 cut(s) 383
AccI GTMKAC 1 cut(s) 899
AccII CGCG 2 cut(s) 54, 238
AciI CCGC 5 cut(s) 20, 233, 298, 311, 383
AclWI GGATC 2 cut(s) 50, 554
AcsI RAATTY 5 cut(s) 656, 698, 749, 803, 976
AcuI CTGAAG 1 cut(s) 491
AfaI GTAC 1 cut(s) 272
AfiI CCNNNNNNNGG 4 cut(s) 69, 128, 304, 307
AflIII ACRYGT 1 cut(s) 951
AgsI TTSAA 7 cut(s) 528, 662, 925, 982, 992, 1018, 1070
Alw21I GWGCWC 2 cut(s) 129, 582
Alw26I GTCTC 3 cut(s) 10, 126, 431
AlwI GGATC 2 cut(s) 50, 554
AoxI GGCC 2 cut(s) 225, 266
ApeKI GCWGC 6 cut(s) 56, 59, 187, 824, 889, 914
ApoI RAATTY 5 cut(s) 656, 698, 749, 803, 976
AspLEI GCGC 3 cut(s) 56, 120, 238
AspS9I GGNCC 4 cut(s) 225, 250, 266, 684
AsuC2I CCSGG 1 cut(s) 122
AsuHPI GGTGA 2 cut(s) 37, 631
AvaII GGWCC 2 cut(s) 250, 684
BanI GGYRCC 1 cut(s) 79
BanII GRGCYC 1 cut(s) 582
BbsI GAAGAC 1 cut(s) 331
Bbv12I GWGCWC 2 cut(s) 129, 582
BbvCI CCTCAGC 1 cut(s) 255
BbvI GCAGC 6 cut(s) 46, 68, 174, 811, 876, 926
BccI CCATC 2 cut(s) 70, 622
BceAI ACGGC 2 cut(s) 253, 285
BcgI CGANNNNNNTGC 2 cut(s) 269, 303
BclI TGATCA 1 cut(s) 621
BcnI CCSGG 1 cut(s) 122
BcoDI GTCTC 3 cut(s) 10, 126, 431
BfmI CTRYAG 2 cut(s) 34, 188
BfoI RGCGCY 1 cut(s) 121
BglI GCCNNNNNGGC 1 cut(s) 233
BglII AGATCT 1 cut(s) 1072
BisI GCNGC 7 cut(s) 57, 60, 188, 234, 825, 890, 915
BlsI GCNGC 7 cut(s) 58, 61, 189, 235, 826, 891, 916
Bme1390I CCNGG 1 cut(s) 122
Bme18I GGWCC 2 cut(s) 250, 684
BmgT120I GGNCC 4 cut(s) 225, 250, 266, 684
BmiI GGNNCC 3 cut(s) 81, 252, 315
BmrFI CCNGG 1 cut(s) 122
BmsI GCATC 3 cut(s) 321, 352, 836
BpiI GAAGAC 1 cut(s) 331
Bpu10I CCTNAGC 1 cut(s) 255
BpuEI CTTGAG 2 cut(s) 699, 1029
BpuMI CCSGG 1 cut(s) 122
Bsa29I ATCGAT 1 cut(s) 469
BsaI GGTCTC 1 cut(s) 10
BsaJI CCNNGG 3 cut(s) 228, 514, 875
BsaWI WCCGGW 1 cut(s) 902
Bsc4I CCNNNNNNNGG 4 cut(s) 69, 128, 304, 307
Bse1I ACTGG 1 cut(s) 1055
Bse3DI GCAATG 1 cut(s) 534
BseCI ATCGAT 1 cut(s) 469
BseDI CCNNGG 3 cut(s) 228, 514, 875
BseGI GGATG 3 cut(s) 367, 580, 871
BseLI CCNNNNNNNGG 4 cut(s) 69, 128, 304, 307
BseMI GCAATG 1 cut(s) 534
BseMII CTCAG 2 cut(s) 269, 767
BseNI ACTGG 1 cut(s) 1055
BseRI GAGGAG 3 cut(s) 82, 419, 503
BseXI GCAGC 6 cut(s) 46, 68, 174, 811, 876, 926
BsgI GTGCAG 1 cut(s) 761
Bsh1236I CGCG 2 cut(s) 54, 238
BshFI GGCC 2 cut(s) 227, 268
BshNI GGYRCC 1 cut(s) 79
BshVI ATCGAT 1 cut(s) 469
BsiHKAI GWGCWC 2 cut(s) 129, 582
BsiSI CCGG 2 cut(s) 122, 903
BsiWI CGTACG 1 cut(s) 270
BslI CCNNNNNNNGG 4 cut(s) 69, 128, 304, 307
BsmAI GTCTC 3 cut(s) 10, 126, 431
BsmBI CGTCTC 1 cut(s) 126
BsnI GGCC 2 cut(s) 227, 268
Bso31I GGTCTC 1 cut(s) 10
Bsp1286I GDGCHC 2 cut(s) 129, 582
Bsp143I GATC 5 cut(s) 42, 466, 559, 621, 1072
BspACI CCGC 5 cut(s) 20, 233, 298, 311, 383
BspANI GGCC 2 cut(s) 227, 268
BspCNI CTCAG 2 cut(s) 268, 768
BspDI ATCGAT 1 cut(s) 469
BspFNI CGCG 2 cut(s) 54, 238
BspLI GGNNCC 3 cut(s) 81, 252, 315
BspMAI CTGCAG 2 cut(s) 38, 192
BspPI GGATC 2 cut(s) 50, 554
BspQI GCTCTTC 1 cut(s) 961
BspT107I GGYRCC 1 cut(s) 79
BspTNI GGTCTC 1 cut(s) 10
BsrBI CCGCTC 1 cut(s) 383
BsrDI GCAATG 1 cut(s) 534
BsrI ACTGG 1 cut(s) 1055
BssECI CCNNGG 3 cut(s) 228, 514, 875
BssMI GATC 5 cut(s) 42, 466, 559, 621, 1072
BssNAI GTATAC 1 cut(s) 900
BssT1I CCWWGG 1 cut(s) 875
Bst1107I GTATAC 1 cut(s) 900
Bst4CI ACNGT 2 cut(s) 16, 897
Bst6I CTCTTC 3 cut(s) 546, 609, 961
BstDEI CTNAG 3 cut(s) 255, 776, 1011
BstF5I GGATG 3 cut(s) 367, 580, 871
BstFNI CGCG 2 cut(s) 54, 238
BstH2I RGCGCY 1 cut(s) 121
BstHHI GCGC 3 cut(s) 56, 120, 238
BstKTI GATC 5 cut(s) 45, 469, 562, 624, 1075
BstMAI GTCTC 3 cut(s) 10, 126, 431
BstMBI GATC 5 cut(s) 42, 466, 559, 621, 1072
BstMWI GCNNNNNNNGC 5 cut(s) 124, 233, 265, 767, 830
BstNSI RCATGY 1 cut(s) 955
BstSCI CCNGG 1 cut(s) 120
BstSFI CTRYAG 2 cut(s) 34, 188
BstUI CGCG 2 cut(s) 54, 238
BstV1I GCAGC 6 cut(s) 46, 68, 174, 811, 876, 926
BstV2I GAAGAC 1 cut(s) 331
BstX2I RGATCY 1 cut(s) 1072
BstYI RGATCY 1 cut(s) 1072
BstZ17I GTATAC 1 cut(s) 900
Bsu15I ATCGAT 1 cut(s) 469
BsuRI GGCC 2 cut(s) 227, 268
BsuTUI ATCGAT 1 cut(s) 469
BtgZI GCGATG 1 cut(s) 89
BtsCI GGATG 3 cut(s) 367, 580, 871
BtsIMutI CAGTG 2 cut(s) 12, 702
CfoI GCGC 3 cut(s) 56, 120, 238
Cfr13I GGNCC 4 cut(s) 225, 250, 266, 684
ClaI ATCGAT 1 cut(s) 469
CseI GACGC 1 cut(s) 142
Csp6I GTAC 1 cut(s) 271
CviAII CATG 5 cut(s) 343, 376, 947, 952, 1083
CviQI GTAC 1 cut(s) 271
DdeI CTNAG 3 cut(s) 255, 776, 1011
DpnI GATC 5 cut(s) 44, 468, 561, 623, 1074
DpnII GATC 5 cut(s) 42, 466, 559, 621, 1072
Eam1104I CTCTTC 3 cut(s) 546, 609, 961
EarI CTCTTC 3 cut(s) 546, 609, 961
EciI GGCGGA 3 cut(s) 35, 287, 326
Ecl136II GAGCTC 1 cut(s) 580
Eco130I CCWWGG 1 cut(s) 875
Eco24I GRGCYC 1 cut(s) 582
Eco31I GGTCTC 1 cut(s) 10
Eco47I GGWCC 2 cut(s) 250, 684
Eco53kI GAGCTC 1 cut(s) 580
Eco57I CTGAAG 1 cut(s) 491
EcoICRI GAGCTC 1 cut(s) 580
EcoO109I RGGNCCY 1 cut(s) 250
EcoRI GAATTC 1 cut(s) 749
EcoT14I CCWWGG 1 cut(s) 875
EcoT38I GRGCYC 1 cut(s) 582
ErhI CCWWGG 1 cut(s) 875
Esp3I CGTCTC 1 cut(s) 126
FaeI CATG 5 cut(s) 346, 379, 950, 955, 1086
FatI CATG 5 cut(s) 342, 375, 946, 951, 1082
FbaI TGATCA 1 cut(s) 621
FblI GTMKAC 1 cut(s) 899
Fnu4HI GCNGC 7 cut(s) 57, 60, 188, 234, 825, 890, 915
FokI GGATG 3 cut(s) 374, 587, 858
FriOI GRGCYC 1 cut(s) 582
Fsp4HI GCNGC 7 cut(s) 57, 60, 188, 234, 825, 890, 915
GlaI GCGC 3 cut(s) 55, 119, 237
GluI GCNGC 7 cut(s) 57, 60, 188, 234, 825, 890, 915
HaeII RGCGCY 1 cut(s) 121
HaeIII GGCC 2 cut(s) 227, 268
HapII CCGG 2 cut(s) 122, 903
HgaI GACGC 1 cut(s) 142
HhaI GCGC 3 cut(s) 56, 120, 238
Hin1II CATG 5 cut(s) 346, 379, 950, 955, 1086
Hin6I GCGC 3 cut(s) 54, 118, 236
HinP1I GCGC 3 cut(s) 54, 118, 236
HindIII AAGCTT 2 cut(s) 503, 794
HinfI GANTC 2 cut(s) 439, 856
HpaII CCGG 2 cut(s) 122, 903
HphI GGTGA 2 cut(s) 37, 631
Hpy166II GTNNAC 3 cut(s) 31, 493, 900
Hpy188I TCNGA 9 cut(s) 42, 131, 280, 357, 415, 518, 675, 684, 1077
Hpy188III TCNNGA 6 cut(s) 625, 716, 884, 992, 1046, 1070
Hpy8I GTNNAC 3 cut(s) 31, 493, 900
Hpy99I CGWCG 1 cut(s) 158
HpyAV CCTTC 4 cut(s) 208, 343, 352, 822
HpyCH4III ACNGT 2 cut(s) 16, 897
HpyCH4IV ACGT 1 cut(s) 135
HpyCH4V TGCA 6 cut(s) 36, 190, 365, 742, 827, 892
HpyF10VI GCNNNNNNNGC 5 cut(s) 124, 233, 265, 767, 830
HpyF3I CTNAG 3 cut(s) 255, 776, 1011
HpySE526I ACGT 1 cut(s) 135
Hsp92II CATG 5 cut(s) 346, 379, 950, 955, 1086
HspAI GCGC 3 cut(s) 54, 118, 236
Ksp22I TGATCA 1 cut(s) 621
Kzo9I GATC 5 cut(s) 42, 466, 559, 621, 1072
LguI GCTCTTC 1 cut(s) 961
LmnI GCTCC 4 cut(s) 22, 313, 432, 516
LpnPI CCDG 9 cut(s) 135, 150, 348, 447, 821, 827, 897, 916, 1068
Lsp1109I GCAGC 6 cut(s) 46, 68, 174, 811, 876, 926
LweI GCATC 3 cut(s) 321, 352, 836
MaeII ACGT 1 cut(s) 135
MaeIII GTNAC 3 cut(s) 136, 584, 722
MalI GATC 5 cut(s) 44, 468, 561, 623, 1074
MbiI CCGCTC 1 cut(s) 383
MboI GATC 5 cut(s) 42, 466, 559, 621, 1072
MboII GAAGA 8 cut(s) 333, 336, 516, 523, 563, 626, 975, 978
MflI RGATCY 1 cut(s) 1072
MhlI GDGCHC 2 cut(s) 129, 582
MluCI AATT 5 cut(s) 656, 698, 749, 803, 976
MlyI GAGTC 2 cut(s) 433, 850
MmeI TCCRAC 5 cut(s) 20, 225, 303, 698, 765
MseI TTAA 1 cut(s) 692
MspA1I CMGCKG 3 cut(s) 59, 833, 917
MspI CCGG 2 cut(s) 122, 903
MspR9I CCNGG 1 cut(s) 122
MvnI CGCG 2 cut(s) 54, 238
MwoI GCNNNNNNNGC 5 cut(s) 124, 233, 265, 767, 830
NciI CCSGG 1 cut(s) 122
NdeII GATC 5 cut(s) 42, 466, 559, 621, 1072
NlaIII CATG 5 cut(s) 346, 379, 950, 955, 1086
NlaIV GGNNCC 3 cut(s) 81, 252, 315
NmeAIII GCCGAG 3 cut(s) 253, 342, 796
NmuCI GTSAC 1 cut(s) 584
NspI RCATGY 1 cut(s) 955
PciI ACATGT 1 cut(s) 951
PciSI GCTCTTC 1 cut(s) 961
Pfl23II CGTACG 1 cut(s) 270
PkrI GCNGC 7 cut(s) 58, 61, 189, 235, 826, 891, 916
PleI GAGTC 2 cut(s) 433, 850
PpsI GAGTC 2 cut(s) 433, 850
PpuMI RGGWCCY 1 cut(s) 250
PscI ACATGT 1 cut(s) 951
Psp124BI GAGCTC 1 cut(s) 582
Psp5II RGGWCCY 1 cut(s) 250
PspLI CGTACG 1 cut(s) 270
PspN4I GGNNCC 3 cut(s) 81, 252, 315
PspPI GGNCC 4 cut(s) 225, 250, 266, 684
PspPPI RGGWCCY 1 cut(s) 250
PstI CTGCAG 2 cut(s) 38, 192
PsuI RGATCY 1 cut(s) 1072
PvuII CAGCTG 3 cut(s) 59, 833, 917
RsaI GTAC 1 cut(s) 272
RsaNI GTAC 1 cut(s) 271
SacI GAGCTC 1 cut(s) 582
SapI GCTCTTC 1 cut(s) 961
SaqAI TTAA 1 cut(s) 692
SatI GCNGC 7 cut(s) 57, 60, 188, 234, 825, 890, 915
Sau3AI GATC 5 cut(s) 42, 466, 559, 621, 1072
Sau96I GGNCC 4 cut(s) 225, 250, 266, 684
SchI GAGTC 2 cut(s) 433, 850
ScrFI CCNGG 1 cut(s) 122
SduI GDGCHC 2 cut(s) 129, 582
SfaNI GCATC 3 cut(s) 321, 352, 836
SfcI CTRYAG 2 cut(s) 34, 188
SinI GGWCC 2 cut(s) 250, 684
SmlI CTYRAG 2 cut(s) 714, 1044
SmoI CTYRAG 2 cut(s) 714, 1044
Sse9I AATT 5 cut(s) 656, 698, 749, 803, 976
SsiI CCGC 5 cut(s) 20, 233, 298, 311, 383
SstI GAGCTC 1 cut(s) 582
StyD4I CCNGG 1 cut(s) 120
StyI CCWWGG 1 cut(s) 875
TaaI ACNGT 2 cut(s) 16, 897
TaiI ACGT 1 cut(s) 138
TaqI TCGA 2 cut(s) 469, 542
TaqII GACCGA 2 cut(s) 224, 343
TasI AATT 5 cut(s) 656, 698, 749, 803, 976
TauI GCSGC 1 cut(s) 236
Tru1I TTAA 1 cut(s) 692
Tru9I TTAA 1 cut(s) 692
TscAI CASTG 2 cut(s) 19, 709
TseFI GTSAC 1 cut(s) 584
TseI GCWGC 6 cut(s) 56, 59, 187, 824, 889, 914
Tsp45I GTSAC 1 cut(s) 584
TspDTI ATGAA 4 cut(s) 497, 523, 564, 1049
TspGWI ACGGA 1 cut(s) 104
TspRI CASTG 2 cut(s) 19, 709
VpaK11BI GGWCC 2 cut(s) 250, 684
XapI RAATTY 5 cut(s) 656, 698, 749, 803, 976
XceI RCATGY 1 cut(s) 955
XmiI GTMKAC 1 cut(s) 899
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.