FvH4_2g33511

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000541
Physical Location & Seq
Forward (+)
25121691 .. 25124590
2900 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g33511.t4

Sequence Viewer

Length: 1092 bp
ATGGCTCTTACCACCGTGGCTGAGAAATGCGAAGCTCCGATCACTCGCGCCGCCGCGAAGCGTAGAGCTCAGGCGGTTTTCGTCGAGGAGAAACAGTTGGCCGTTAAGAAAAGGGCTGTTCTGGGAGATGTTACCACCTTGGCAAACGTCGTCGCTTTGGCCAACAATATTCTTGGGGTTGCGCCGCCGCAGAAGCCTAAATTGGAAATCAAGAAGGCTGTGAAGAAGGCGGCGCGTGACGATGAGGACCCTCAGCTTTGTGGGCCCTACGCTGCTGATATTTACGCATATCTCCGCCGTATGGAGGTGGAACCAAAGAGAAGGCCATTGCCTGATTACATGGAGAAGATCCAGAAGGATTCTATCAATGCGAATATGAGAGGTGTTCTTGTGGATTGGTTTGTGGAGGTTGCAGATGAATATGAGCTCCTACCGGAGACCCTTCATCTTGCTGTGTCTTATGTTGATAAGTATCTCTCCATGAATGTGGTGCCAAGGAGTGAGCTTCAGCTAGTCGGAGTGGCTTCGATCTTTATTGCCTCGAAGTATGAAGAGATTGATCCTCCAAATGTGGATGAGCTTTCTGACATAACTGAAAATACATTCACTAAACAACAGGTGATCAAGATGGAGGCTAATATACTCCTTTCTCTGAAATTTGAAATGGGAAATCCCAATGTTCGAACATTCTTAAGAAAATTCATTGATCTTGCTCAAGAGAGTTACTACAAAACTCCCAGTGTGCAGTTTGAGTATTTGATTCACTACCTCACAGATCTAAGTTTGGTGGATTACAAACTTGTGAAGTTCTTGCCTTCTATGATAGCTGCATCCGCTGTATTTCTAGCAAGAGTTATTATTACTAGATCAAAAGTGAATGCTTGGTGTCCAGCACTGCAAGAATATACTGGTTATAAGGCAGCTGATTTGAGAGAATGTGTTCTTATCATTCATGACTTGTACTTGGGTAGACGTGGTGGATCTTTGGTAGCTGTACGAGAAAAATACAAGCAAACTAAGTTCAAATGTGTGGCAAAAATGCATTGCCCTTCACAGTTACCAGATTCATTGTTTGGAGATGCGAAAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

364

Amino Acids

40.96

Weight (kDa)

8.67

Isoelectric Point (pI)

50.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 93 - 222 9.8e-42 Cyclin, N-terminal domain
Cyclin_C PF02984 225 - 341 6.8e-30 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000541)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47210 AT1G47210 AT1G47220 AT1G47230 AT1G47230 AT2G01310 AT5G43080 AT5G43080
fragaria_vesca FvH4_2g04770 FvH4_2g04770 FvH4_2g04770 FvH4_2g33510 FvH4_2g33510 FvH4_2g33510 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33530 FvH4_2g33530
malus_domestica MD05G1092000.v1.1 MD08G1091000.v1.1 MD08G1091200.v1.1 MD10G1100200.v1.1 MD10G1100700.v1.1 MD12G1105600.v1.1 MD15G1075100.v1.1 MD15G1075200.v1.1
prunus_persica Prupe.1G428000_v2.0.a1 Prupe.1G428100_v2.0.a1 Prupe.4G285800_v2.0.a1 Prupe.8G137700_v2.0.a1 Prupe.8G137700_v2.0.a1
pyrus_communis pycom05g09170 pycom08g07360 pycom08g07370 pycom15g07000 pycom15g07020
rosa_chinensis RchiOBHm_Chr3g0465621 RchiOBHm_Chr6g0254421 RchiOBHm_Chr6g0254451 RchiOBHm_Chr6g0308961 RchiOBHm_Chr6g0308971 RchiOBHm_Chr6g0308991 RchiOBHm_Chr7g0190851
rosa_laevigata RLG00000003915 RLG00000010598 RLG00000010599 RLG00000010600 RLG00000014913
rosa_multiflora Rmu_sc0009578.1_g000002 Rmu_sc0009578.1_g000003 Rmu_sc0029942.1_g000001 Rmu_sc0036151.1_g000001 Rmu_sc0036151.1_g000002 Rmu_sc0037719.1_g000001 Rmu_sc0042877.1_g000001 Rmu_ssc0000481.1_g000003
rosa_roxburghii Rroxscaffold_7G00159740 Rroxscaffold_7G00159750 Rroxscaffold_7G00159760 Rroxscaffold_7G00159770 Rroxscaffold_7G00210810
rosa_rugosa Rorug05G0552200 Rorug05G0552300 Rorug05G0552400
rosa_samantha Rh3CG081000 Rh6AG069300 Rh6AG481300 Rh6AG481600 Rh6BG062000 Rh6BG490400 Rh6BG490500 Rh6BG490600 Rh6CG062100 Rh6CG495700 Rh6CG495900 Rh6DG059100 Rh6DG481600 Rh6DG481700 Rh6DG481800
rosa_wichuraiana Rw6G006090 Rw6G041930 Rw6G041940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 915
AccB1I GGYRCC 1 cut(s) 490
AccI GTMKAC 1 cut(s) 970
AccII CGCG 3 cut(s) 48, 56, 235
AciI CCGC 8 cut(s) 51, 54, 74, 185, 188, 230, 295, 834
AclWI GGATC 3 cut(s) 343, 554, 988
AcoI YGGCCR 2 cut(s) 99, 159
AcsI RAATTY 2 cut(s) 656, 698
AcuI CTGAAG 1 cut(s) 491
AfaI GTAC 2 cut(s) 962, 996
AfiI CCNNNNNNNGG 2 cut(s) 301, 304
AflII CTTAAG 1 cut(s) 691
AgsI TTSAA 2 cut(s) 662, 1024
AjiI CACGTC 1 cut(s) 974
AjuI GAANNNNNNNTTGG 2 cut(s) 185, 217
Alw21I GWGCWC 2 cut(s) 70, 429
Alw26I GTCTC 1 cut(s) 431
AlwI GGATC 3 cut(s) 343, 554, 988
AoxI GGCC 4 cut(s) 99, 159, 263, 323
ApaI GGGCCC 1 cut(s) 267
ApeKI GCWGC 3 cut(s) 272, 827, 920
ApoI RAATTY 2 cut(s) 656, 698
Asp700I GAANNNNTTC 1 cut(s) 939
AspLEI GCGC 3 cut(s) 50, 184, 235
AspS9I GGNCC 3 cut(s) 247, 263, 264
AsuHPI GGTGA 1 cut(s) 631
AsuII TTCGAA 1 cut(s) 682
AvaII GGWCC 1 cut(s) 247
BaeGI GKGCMC 1 cut(s) 267
BalI TGGCCA 1 cut(s) 161
BanI GGYRCC 1 cut(s) 490
BanII GRGCYC 3 cut(s) 70, 267, 429
Bbv12I GWGCWC 2 cut(s) 70, 429
BbvCI CCTCAGC 1 cut(s) 252
BbvI GCAGC 3 cut(s) 259, 814, 932
BccI CCATC 1 cut(s) 622
BceAI ACGGC 2 cut(s) 86, 282
BclI TGATCA 1 cut(s) 621
BcoDI GTCTC 1 cut(s) 431
BfaI CTAG 3 cut(s) 512, 845, 864
BfrI CTTAAG 1 cut(s) 691
BglII AGATCT 1 cut(s) 775
BisI GCNGC 8 cut(s) 51, 54, 185, 188, 231, 273, 828, 921
BlsI GCNGC 8 cut(s) 52, 55, 186, 189, 232, 274, 829, 922
Bme18I GGWCC 1 cut(s) 247
BmgBI CACGTC 1 cut(s) 974
BmgT120I GGNCC 3 cut(s) 247, 263, 264
BmiI GGNNCC 4 cut(s) 249, 265, 312, 492
BmrI ACTGGG 1 cut(s) 732
BmsI GCATC 2 cut(s) 839, 1069
BmuI ACTGGG 1 cut(s) 732
Bpu10I CCTNAGC 2 cut(s) 69, 252
Bpu14I TTCGAA 1 cut(s) 682
BpuEI CTTGAG 1 cut(s) 699
BsaBI GATNNNNATC 1 cut(s) 471
BsaI GGTCTC 1 cut(s) 431
BsaJI CCNNGG 3 cut(s) 15, 138, 494
BsaWI WCCGGW 1 cut(s) 433
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bsc4I CCNNNNNNNGG 2 cut(s) 301, 304
Bse1I ACTGG 2 cut(s) 738, 913
Bse3DI GCAATG 2 cut(s) 326, 1042
Bse8I GATNNNNATC 1 cut(s) 471
BseDI CCNNGG 3 cut(s) 15, 138, 494
BseGI GGATG 2 cut(s) 580, 830
BseJI GATNNNNATC 1 cut(s) 471
BseLI CCNNNNNNNGG 2 cut(s) 301, 304
BseMI GCAATG 2 cut(s) 326, 1042
BseMII CTCAG 3 cut(s) 12, 83, 266
BseNI ACTGG 2 cut(s) 738, 913
BseRI GAGGAG 1 cut(s) 101
BseSI GKGCMC 1 cut(s) 267
BseXI GCAGC 3 cut(s) 259, 814, 932
BsgI GTGCAG 1 cut(s) 764
Bsh1236I CGCG 3 cut(s) 48, 56, 235
BshFI GGCC 4 cut(s) 101, 161, 265, 325
BshNI GGYRCC 1 cut(s) 490
BsiHKAI GWGCWC 2 cut(s) 70, 429
BsiSI CCGG 1 cut(s) 434
BslI CCNNNNNNNGG 2 cut(s) 301, 304
BsmAI GTCTC 1 cut(s) 431
BsmI GAATGC 1 cut(s) 883
BsnI GGCC 4 cut(s) 101, 161, 265, 325
Bso31I GGTCTC 1 cut(s) 431
Bsp119I TTCGAA 1 cut(s) 682
Bsp120I GGGCCC 1 cut(s) 263
Bsp1286I GDGCHC 3 cut(s) 70, 267, 429
Bsp143I GATC 9 cut(s) 39, 348, 528, 559, 621, 706, 775, 866, 980
BspACI CCGC 8 cut(s) 51, 54, 74, 185, 188, 230, 295, 834
BspANI GGCC 4 cut(s) 101, 161, 265, 325
BspCNI CTCAG 3 cut(s) 13, 82, 265
BspFNI CGCG 3 cut(s) 48, 56, 235
BspHI TCATGA 1 cut(s) 952
BspLI GGNNCC 4 cut(s) 249, 265, 312, 492
BspPI GGATC 3 cut(s) 343, 554, 988
BspT104I TTCGAA 1 cut(s) 682
BspT107I GGYRCC 1 cut(s) 490
BspTI CTTAAG 1 cut(s) 691
BspTNI GGTCTC 1 cut(s) 431
BsrDI GCAATG 2 cut(s) 326, 1042
BsrI ACTGG 2 cut(s) 738, 913
BssECI CCNNGG 3 cut(s) 15, 138, 494
BssMI GATC 9 cut(s) 39, 348, 528, 559, 621, 706, 775, 866, 980
BssT1I CCWWGG 2 cut(s) 138, 494
Bst4CI ACNGT 3 cut(s) 16, 96, 1056
Bst6I CTCTTC 1 cut(s) 546
BstAFI CTTAAG 1 cut(s) 691
BstBI TTCGAA 1 cut(s) 682
BstDEI CTNAG 5 cut(s) 21, 69, 252, 779, 1017
BstDSI CCRYGG 1 cut(s) 15
BstF5I GGATG 2 cut(s) 580, 830
BstFNI CGCG 3 cut(s) 48, 56, 235
BstHHI GCGC 3 cut(s) 50, 184, 235
BstKTI GATC 9 cut(s) 42, 351, 531, 562, 624, 709, 778, 869, 983
BstMAI GTCTC 1 cut(s) 431
BstMBI GATC 9 cut(s) 39, 348, 528, 559, 621, 706, 775, 866, 980
BstMWI GCNNNNNNNGC 3 cut(s) 193, 262, 833
BstSLI GKGCMC 1 cut(s) 267
BstUI CGCG 3 cut(s) 48, 56, 235
BstV1I GCAGC 3 cut(s) 259, 814, 932
BstX2I RGATCY 3 cut(s) 348, 775, 980
BstXI CCANNNNNNTGG 1 cut(s) 487
BstYI RGATCY 3 cut(s) 348, 775, 980
BsuRI GGCC 4 cut(s) 101, 161, 265, 325
BtgI CCRYGG 1 cut(s) 15
BtrI CACGTC 1 cut(s) 974
BtsCI GGATG 2 cut(s) 580, 830
BtsI GCAGTG 1 cut(s) 893
BtsIMutI CAGTG 2 cut(s) 745, 893
CciI TCATGA 1 cut(s) 952
CfoI GCGC 3 cut(s) 50, 184, 235
Cfr13I GGNCC 3 cut(s) 247, 263, 264
Csp6I GTAC 2 cut(s) 961, 995
CviAII CATG 4 cut(s) 340, 481, 953, 1089
CviQI GTAC 2 cut(s) 961, 995
DdeI CTNAG 5 cut(s) 21, 69, 252, 779, 1017
DpnI GATC 9 cut(s) 41, 350, 530, 561, 623, 708, 777, 868, 982
DpnII GATC 9 cut(s) 39, 348, 528, 559, 621, 706, 775, 866, 980
EaeI YGGCCR 2 cut(s) 99, 159
Eam1104I CTCTTC 1 cut(s) 546
EarI CTCTTC 1 cut(s) 546
EciI GGCGGA 1 cut(s) 284
Ecl136II GAGCTC 2 cut(s) 68, 427
Eco130I CCWWGG 2 cut(s) 138, 494
Eco24I GRGCYC 3 cut(s) 70, 267, 429
Eco31I GGTCTC 1 cut(s) 431
Eco47I GGWCC 1 cut(s) 247
Eco53kI GAGCTC 2 cut(s) 68, 427
Eco57I CTGAAG 1 cut(s) 491
EcoICRI GAGCTC 2 cut(s) 68, 427
EcoO109I RGGNCCY 2 cut(s) 247, 264
EcoT14I CCWWGG 2 cut(s) 138, 494
EcoT22I ATGCAT 1 cut(s) 1044
EcoT38I GRGCYC 3 cut(s) 70, 267, 429
ErhI CCWWGG 2 cut(s) 138, 494
FaeI CATG 4 cut(s) 343, 484, 956, 1092
FatI CATG 4 cut(s) 339, 480, 952, 1088
FbaI TGATCA 1 cut(s) 621
FblI GTMKAC 1 cut(s) 970
Fnu4HI GCNGC 8 cut(s) 51, 54, 185, 188, 231, 273, 828, 921
FokI GGATG 2 cut(s) 587, 817
FriOI GRGCYC 3 cut(s) 70, 267, 429
Fsp4HI GCNGC 8 cut(s) 51, 54, 185, 188, 231, 273, 828, 921
FspBI CTAG 3 cut(s) 512, 845, 864
GlaI GCGC 3 cut(s) 49, 183, 234
GluI GCNGC 8 cut(s) 51, 54, 185, 188, 231, 273, 828, 921
HaeIII GGCC 4 cut(s) 101, 161, 265, 325
HapII CCGG 1 cut(s) 434
HhaI GCGC 3 cut(s) 50, 184, 235
Hin1II CATG 4 cut(s) 343, 484, 956, 1092
Hin6I GCGC 3 cut(s) 48, 182, 233
HinP1I GCGC 3 cut(s) 48, 182, 233
HinfI GANTC 3 cut(s) 359, 760, 1064
HpaII CCGG 1 cut(s) 434
HphI GGTGA 1 cut(s) 631
Hpy166II GTNNAC 1 cut(s) 971
Hpy188I TCNGA 4 cut(s) 39, 518, 586, 654
Hpy188III TCNNGA 5 cut(s) 211, 352, 625, 716, 953
Hpy8I GTNNAC 1 cut(s) 971
Hpy99I CGWCG 3 cut(s) 86, 152, 155
HpyAV CCTTC 7 cut(s) 208, 220, 315, 349, 452, 825, 1059
HpyCH4III ACNGT 3 cut(s) 16, 96, 1056
HpyCH4IV ACGT 2 cut(s) 147, 973
HpyCH4V TGCA 5 cut(s) 413, 745, 830, 898, 1042
HpyF10VI GCNNNNNNNGC 3 cut(s) 193, 262, 833
HpyF3I CTNAG 5 cut(s) 21, 69, 252, 779, 1017
HpySE526I ACGT 2 cut(s) 147, 973
Hsp92II CATG 4 cut(s) 343, 484, 956, 1092
HspAI GCGC 3 cut(s) 48, 182, 233
Ksp22I TGATCA 1 cut(s) 621
Kzo9I GATC 9 cut(s) 39, 348, 528, 559, 621, 706, 775, 866, 980
LmnI GCTCC 2 cut(s) 40, 432
Lsp1109I GCAGC 3 cut(s) 259, 814, 932
LweI GCATC 2 cut(s) 839, 1069
MaeI CTAG 3 cut(s) 512, 845, 864
MaeII ACGT 2 cut(s) 147, 973
MaeIII GTNAC 4 cut(s) 130, 236, 722, 1056
MalI GATC 9 cut(s) 41, 350, 530, 561, 623, 708, 777, 868, 982
MboI GATC 9 cut(s) 39, 348, 528, 559, 621, 706, 775, 866, 980
MboII GAAGA 3 cut(s) 235, 358, 563
MflI RGATCY 3 cut(s) 348, 775, 980
MhlI GDGCHC 3 cut(s) 70, 267, 429
MlsI TGGCCA 1 cut(s) 161
MluCI AATT 3 cut(s) 200, 656, 698
MluNI TGGCCA 1 cut(s) 161
MmeI TCCRAC 1 cut(s) 496
Mox20I TGGCCA 1 cut(s) 161
Mph1103I ATGCAT 1 cut(s) 1044
MroXI GAANNNNTTC 1 cut(s) 939
MscI TGGCCA 1 cut(s) 161
MseI TTAA 2 cut(s) 105, 692
MslI CAYNNNNRTG 1 cut(s) 485
Msp20I TGGCCA 1 cut(s) 161
MspA1I CMGCKG 2 cut(s) 836, 923
MspCI CTTAAG 1 cut(s) 691
MspI CCGG 1 cut(s) 434
Mva1269I GAATGC 1 cut(s) 883
MvnI CGCG 3 cut(s) 48, 56, 235
MwoI GCNNNNNNNGC 3 cut(s) 193, 262, 833
NdeII GATC 9 cut(s) 39, 348, 528, 559, 621, 706, 775, 866, 980
NlaIII CATG 4 cut(s) 343, 484, 956, 1092
NlaIV GGNNCC 4 cut(s) 249, 265, 312, 492
NmuCI GTSAC 1 cut(s) 236
NsiI ATGCAT 1 cut(s) 1044
NspV TTCGAA 1 cut(s) 682
PagI TCATGA 1 cut(s) 952
PctI GAATGC 1 cut(s) 883
PdmI GAANNNNTTC 1 cut(s) 939
PfeI GAWTC 3 cut(s) 359, 760, 1064
PkrI GCNGC 8 cut(s) 52, 55, 186, 189, 232, 274, 829, 922
PpuMI RGGWCCY 1 cut(s) 247
PsiI TTATAA 1 cut(s) 915
Psp124BI GAGCTC 2 cut(s) 70, 429
Psp5II RGGWCCY 1 cut(s) 247
PspN4I GGNNCC 4 cut(s) 249, 265, 312, 492
PspOMI GGGCCC 1 cut(s) 263
PspPI GGNCC 3 cut(s) 247, 263, 264
PspPPI RGGWCCY 1 cut(s) 247
PsuI RGATCY 3 cut(s) 348, 775, 980
PvuII CAGCTG 1 cut(s) 923
RsaI GTAC 2 cut(s) 962, 996
RsaNI GTAC 2 cut(s) 961, 995
RseI CAYNNNNRTG 1 cut(s) 485
SacI GAGCTC 2 cut(s) 70, 429
SaqAI TTAA 2 cut(s) 105, 692
SatI GCNGC 8 cut(s) 51, 54, 185, 188, 231, 273, 828, 921
Sau3AI GATC 9 cut(s) 39, 348, 528, 559, 621, 706, 775, 866, 980
Sau96I GGNCC 3 cut(s) 247, 263, 264
SduI GDGCHC 3 cut(s) 70, 267, 429
SfaNI GCATC 2 cut(s) 839, 1069
SfuI TTCGAA 1 cut(s) 682
SinI GGWCC 1 cut(s) 247
SmiMI CAYNNNNRTG 1 cut(s) 485
SmlI CTYRAG 2 cut(s) 691, 714
SmoI CTYRAG 2 cut(s) 691, 714
Sse9I AATT 3 cut(s) 200, 656, 698
SsiI CCGC 8 cut(s) 51, 54, 74, 185, 188, 230, 295, 834
SspI AATATT 1 cut(s) 169
SspMI CTAG 3 cut(s) 512, 845, 864
SstI GAGCTC 2 cut(s) 70, 429
StyI CCWWGG 2 cut(s) 138, 494
TaaI ACNGT 3 cut(s) 16, 96, 1056
TaiI ACGT 2 cut(s) 150, 976
TaqI TCGA 4 cut(s) 84, 527, 542, 682
TasI AATT 3 cut(s) 200, 656, 698
TatI WGTACW 1 cut(s) 960
TauI GCSGC 5 cut(s) 53, 56, 187, 190, 233
TfiI GAWTC 3 cut(s) 359, 760, 1064
Tru1I TTAA 2 cut(s) 105, 692
Tru9I TTAA 2 cut(s) 105, 692
TscAI CASTG 2 cut(s) 745, 900
TseFI GTSAC 1 cut(s) 236
TseI GCWGC 3 cut(s) 272, 827, 920
Tsp45I GTSAC 1 cut(s) 236
TspDTI ATGAA 7 cut(s) 432, 434, 497, 564, 691, 941, 1056
TspRI CASTG 2 cut(s) 745, 900
Vha464I CTTAAG 1 cut(s) 691
VpaK11BI GGWCC 1 cut(s) 247
XapI RAATTY 2 cut(s) 656, 698
XmiI GTMKAC 1 cut(s) 970
XmnI GAANNNNTTC 1 cut(s) 939
XspI CTAG 3 cut(s) 512, 845, 864
Zsp2I ATGCAT 1 cut(s) 1044
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.