AT5G43080

Belongs to the cyclin family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
17292952 .. 17295024
2073 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G43080.2

Sequence Viewer

Length: 1068 bp
ATGGCCGACGAAAAAGAGAACTGCGTGAGAATGACAAGAGCAGCAACAAAAAGAAAAGCTTCCATGGAAGCGGCAATAGACAAAGAACGAATCAACAAGAAGAGAGTCGTACTCGGAGAGCTTCCAAACTTGTCCAACATCAAGAAATCTCGAAAAGCCACTACAAAACAGAAGAAGAAATCAGTTTCGATTCCGACAATCGAAACCTTAAATTCAGACATTGACACAAGATCTGATGATCCACAAATGTGTGGTCCTTATGTTACATCAATCTTCGAGTATCTTCGTCAATTAGAGGTAAAGTCAAGACCTTTGGTTGATTATATAGAGAAGATTCAGAAAGATGTAACTTCGAATATGAGAGGAGTTTTGGTTGATTGGTTAGTAGAAGTTGCTGAAGAATACAAACTTCTCTCAGACACTCTTTACCTCGCTGTTTCTTACATTGATAGATTCTTGTCTCTCAAGACTGTTAATAAACAAAGGCTTCAGCTTTTGGGAGTTACTTCAATGCTTATTGCTTCAAAGTATGAAGAGATTACTCCTCCAAATGTGGATGACTTTTGTTATATCACAGACAATACTTACACGAAACAAGAGATTGTTAAGATGGAAGCTGATATACTTCTTGCGTTGCAATTTGAATTAGGAAACCCTACAAGCAACACGTTTCTAAGACGGTTTACAAGGGTTGCACAAGAAGATTTCGAAATGTCACATTTACAGATGGAGTTTCTTTGTAGCTATCTTTCGGAGTTGAGCATGTTAGACTATCAATCTGTGAAGTTTCTTCCGTCTACTGTGGCTGCTTCAGCGGTGTTTCTCGCTAGGTTCATCATCCGTCCAAAACAACATCCCTGGAATGTGATGTTGGAAGAATACACAAGATACAAAGCGGGTGATTTGAAAGAATGTGTGGCTATGATACATGACTTGTATCTGAGTAGAAAATGTGGAGCTTTAGAAGCTATAAGAGAGAAATACAAGCAGCATAAGTTCAAGTGTGTAGCGACAATGCCTGTATCACCAGAGCTGCCTCTTACGGTTTTTGAAGATGTCAACATTTAG

Protein Analysis

355

Amino Acids

40.96

Weight (kDa)

8.3

Isoelectric Point (pI)

42.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 91 - 216 2.7e-48 Cyclin, N-terminal domain
Cyclin_C PF02984 219 - 336 4.2e-38 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000541)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47210 AT1G47210 AT1G47220 AT1G47230 AT1G47230 AT2G01310 AT5G43080 AT5G43080
fragaria_vesca FvH4_2g04770 FvH4_2g04770 FvH4_2g04770 FvH4_2g33510 FvH4_2g33510 FvH4_2g33510 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33530 FvH4_2g33530
malus_domestica MD05G1092000.v1.1 MD08G1091000.v1.1 MD08G1091200.v1.1 MD10G1100200.v1.1 MD10G1100700.v1.1 MD12G1105600.v1.1 MD15G1075100.v1.1 MD15G1075200.v1.1
prunus_persica Prupe.1G428000_v2.0.a1 Prupe.1G428100_v2.0.a1 Prupe.4G285800_v2.0.a1 Prupe.8G137700_v2.0.a1 Prupe.8G137700_v2.0.a1
pyrus_communis pycom05g09170 pycom08g07360 pycom08g07370 pycom15g07000 pycom15g07020
rosa_chinensis RchiOBHm_Chr3g0465621 RchiOBHm_Chr6g0254421 RchiOBHm_Chr6g0254451 RchiOBHm_Chr6g0308961 RchiOBHm_Chr6g0308971 RchiOBHm_Chr6g0308991 RchiOBHm_Chr7g0190851
rosa_laevigata RLG00000003915 RLG00000010598 RLG00000010599 RLG00000010600 RLG00000014913
rosa_multiflora Rmu_sc0009578.1_g000002 Rmu_sc0009578.1_g000003 Rmu_sc0029942.1_g000001 Rmu_sc0036151.1_g000001 Rmu_sc0036151.1_g000002 Rmu_sc0037719.1_g000001 Rmu_sc0042877.1_g000001 Rmu_ssc0000481.1_g000003
rosa_roxburghii Rroxscaffold_7G00159740 Rroxscaffold_7G00159750 Rroxscaffold_7G00159760 Rroxscaffold_7G00159770 Rroxscaffold_7G00210810
rosa_rugosa Rorug05G0552200 Rorug05G0552300 Rorug05G0552400
rosa_samantha Rh3CG081000 Rh6AG069300 Rh6AG481300 Rh6AG481600 Rh6BG062000 Rh6BG490400 Rh6BG490500 Rh6BG490600 Rh6CG062100 Rh6CG495700 Rh6CG495900 Rh6DG059100 Rh6DG481600 Rh6DG481700 Rh6DG481800
rosa_wichuraiana Rw6G006090 Rw6G041930 Rw6G041940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 797
AciI CCGC 3 cut(s) 71, 815, 896
AclWI GGATC 1 cut(s) 233
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 211
AcuI CTGAAG 3 cut(s) 417, 473, 795
AfaI GTAC 1 cut(s) 111
AflIII ACRYGT 1 cut(s) 666
AgsI TTSAA 6 cut(s) 510, 525, 644, 907, 1000, 1052
AjnI CCWGG 1 cut(s) 857
AjuI GAANNNNNNNTTGG 2 cut(s) 854, 886
AleI CACNNNNGTG 1 cut(s) 247
AluBI AGCT 8 cut(s) 59, 121, 493, 617, 744, 959, 968, 1033
AluI AGCT 8 cut(s) 59, 121, 493, 617, 744, 959, 968, 1033
Alw26I GTCTC 1 cut(s) 465
AlwI GGATC 1 cut(s) 233
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 4 cut(s) 41, 806, 988, 1033
ApoI RAATTY 1 cut(s) 211
ArsI GACNNNNNNTTYG 2 cut(s) 238, 270
Asp700I GAANNNNTTC 1 cut(s) 58
AspS9I GGNCC 1 cut(s) 254
AsuHPI GGTGA 2 cut(s) 911, 1017
AsuII TTCGAA 2 cut(s) 353, 708
AvaII GGWCC 1 cut(s) 254
BarI GAAGNNNNNNTAC 2 cut(s) 606, 638
BbvI GCAGC 4 cut(s) 53, 793, 1000, 1020
BccI CCATC 2 cut(s) 604, 721
BciT130I CCWGG 1 cut(s) 859
BcoDI GTCTC 1 cut(s) 465
BfaI CTAG 1 cut(s) 828
BglII AGATCT 1 cut(s) 230
BisI GCNGC 5 cut(s) 42, 72, 807, 989, 1034
BlsI GCNGC 5 cut(s) 43, 73, 808, 990, 1035
Bme1390I CCNGG 1 cut(s) 859
Bme18I GGWCC 1 cut(s) 254
BmgT120I GGNCC 1 cut(s) 254
BmrFI CCNGG 1 cut(s) 859
BplI GAGNNNNNCTC 2 cut(s) 96, 128
Bpu14I TTCGAA 2 cut(s) 353, 708
BpuEI CTTGAG 1 cut(s) 449
BsaJI CCNNGG 2 cut(s) 63, 857
BsaXI ACNNNNNCTCC 2 cut(s) 357, 387
BseBI CCWGG 1 cut(s) 859
BseDI CCNNGG 2 cut(s) 63, 857
BseGI GGATG 3 cut(s) 562, 837, 853
BseMII CTCAG 2 cut(s) 429, 932
BseRI GAGGAG 2 cut(s) 378, 534
BseXI GCAGC 4 cut(s) 53, 793, 1000, 1020
BshFI GGCC 1 cut(s) 5
BsmAI GTCTC 1 cut(s) 465
BsnI GGCC 1 cut(s) 5
Bsp119I TTCGAA 2 cut(s) 353, 708
Bsp143I GATC 2 cut(s) 230, 238
Bsp19I CCATGG 1 cut(s) 63
BspACI CCGC 3 cut(s) 71, 815, 896
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 428, 933
BspPI GGATC 1 cut(s) 233
BspT104I TTCGAA 2 cut(s) 353, 708
BssECI CCNNGG 2 cut(s) 63, 857
BssMI GATC 2 cut(s) 230, 238
BssT1I CCWWGG 1 cut(s) 63
Bst2UI CCWGG 1 cut(s) 859
Bst4CI ACNGT 4 cut(s) 472, 681, 802, 1045
Bst6I CTCTTC 2 cut(s) 95, 528
BstBI TTCGAA 2 cut(s) 353, 708
BstDEI CTNAG 3 cut(s) 415, 674, 941
BstDSI CCRYGG 1 cut(s) 63
BstF5I GGATG 3 cut(s) 562, 837, 853
BstKTI GATC 2 cut(s) 233, 241
BstMAI GTCTC 1 cut(s) 465
BstMBI GATC 2 cut(s) 230, 238
BstMWI GCNNNNNNNGC 2 cut(s) 812, 965
BstNI CCWGG 1 cut(s) 859
BstNSI RCATGY 1 cut(s) 766
BstSCI CCNGG 1 cut(s) 857
BstV1I GCAGC 4 cut(s) 53, 793, 1000, 1020
BstX2I RGATCY 1 cut(s) 230
BstYI RGATCY 1 cut(s) 230
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 63
BtsCI GGATG 3 cut(s) 562, 837, 853
Cfr13I GGNCC 1 cut(s) 254
Csp6I GTAC 1 cut(s) 110
CviAII CATG 3 cut(s) 64, 763, 929
CviQI GTAC 1 cut(s) 110
DdeI CTNAG 3 cut(s) 415, 674, 941
DpnI GATC 2 cut(s) 232, 240
DpnII GATC 2 cut(s) 230, 238
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 95, 528
EarI CTCTTC 2 cut(s) 95, 528
Eco130I CCWWGG 1 cut(s) 63
Eco47I GGWCC 1 cut(s) 254
Eco57I CTGAAG 3 cut(s) 417, 473, 795
EcoRII CCWGG 1 cut(s) 857
EcoT14I CCWWGG 1 cut(s) 63
ErhI CCWWGG 1 cut(s) 63
FaeI CATG 3 cut(s) 67, 766, 932
FalI AAGNNNNNCTT 2 cut(s) 43, 75
FatI CATG 3 cut(s) 63, 762, 928
FauI CCCGC 1 cut(s) 889
FblI GTMKAC 1 cut(s) 797
Fnu4HI GCNGC 5 cut(s) 42, 72, 807, 989, 1034
FokI GGATG 3 cut(s) 569, 824, 840
Fsp4HI GCNGC 5 cut(s) 42, 72, 807, 989, 1034
FspBI CTAG 1 cut(s) 828
GluI GCNGC 5 cut(s) 42, 72, 807, 989, 1034
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 3 cut(s) 67, 766, 932
HincII GTYRAC 1 cut(s) 1060
HindII GTYRAC 1 cut(s) 1060
HindIII AAGCTT 1 cut(s) 57
HinfI GANTC 5 cut(s) 90, 105, 190, 334, 453
HphI GGTGA 2 cut(s) 911, 1017
Hpy166II GTNNAC 3 cut(s) 684, 798, 1060
Hpy188I TCNGA 8 cut(s) 116, 195, 217, 235, 339, 418, 754, 942
Hpy188III TCNNGA 4 cut(s) 142, 150, 306, 466
Hpy8I GTNNAC 3 cut(s) 684, 798, 1060
Hpy99I CGWCG 1 cut(s) 11
HpyCH4III ACNGT 4 cut(s) 472, 681, 802, 1045
HpyCH4IV ACGT 1 cut(s) 668
HpyCH4V TGCA 2 cut(s) 637, 695
HpyF10VI GCNNNNNNNGC 2 cut(s) 812, 965
HpyF3I CTNAG 3 cut(s) 415, 674, 941
HpySE526I ACGT 1 cut(s) 668
Hsp92II CATG 3 cut(s) 67, 766, 932
Kzo9I GATC 2 cut(s) 230, 238
LmnI GCTCC 1 cut(s) 956
LpnPI CCDG 4 cut(s) 844, 871, 1032, 1041
Lsp1109I GCAGC 4 cut(s) 53, 793, 1000, 1020
MaeI CTAG 1 cut(s) 828
MaeII ACGT 1 cut(s) 668
MaeIII GTNAC 4 cut(s) 262, 346, 502, 714
MalI GATC 2 cut(s) 232, 240
MboI GATC 2 cut(s) 230, 238
MflI RGATCY 1 cut(s) 230
MluCI AATT 4 cut(s) 211, 290, 638, 644
MlyI GAGTC 1 cut(s) 114
MmeI TCCRAC 3 cut(s) 159, 218, 852
MnlI CCTC 5 cut(s) 289, 356, 440, 555, 1047
MroXI GAANNNNTTC 1 cut(s) 58
MseI TTAA 3 cut(s) 209, 474, 606
MslI CAYNNNNRTG 1 cut(s) 247
MspA1I CMGCKG 1 cut(s) 815
MspR9I CCNGG 1 cut(s) 859
MvaI CCWGG 1 cut(s) 859
MwoI GCNNNNNNNGC 2 cut(s) 812, 965
NcoI CCATGG 1 cut(s) 63
NdeII GATC 2 cut(s) 230, 238
NlaIII CATG 3 cut(s) 67, 766, 932
NmuCI GTSAC 1 cut(s) 714
NspI RCATGY 1 cut(s) 766
NspV TTCGAA 2 cut(s) 353, 708
OliI CACNNNNGTG 1 cut(s) 247
PdmI GAANNNNTTC 1 cut(s) 58
PfeI GAWTC 4 cut(s) 90, 190, 334, 453
PkrI GCNGC 5 cut(s) 43, 73, 808, 990, 1035
PleI GAGTC 1 cut(s) 113
PpsI GAGTC 1 cut(s) 113
Psp6I CCWGG 1 cut(s) 857
PspGI CCWGG 1 cut(s) 857
PspPI GGNCC 1 cut(s) 254
PsuI RGATCY 1 cut(s) 230
RsaI GTAC 1 cut(s) 111
RsaNI GTAC 1 cut(s) 110
RseI CAYNNNNRTG 1 cut(s) 247
SaqAI TTAA 3 cut(s) 209, 474, 606
SatI GCNGC 5 cut(s) 42, 72, 807, 989, 1034
Sau3AI GATC 2 cut(s) 230, 238
Sau96I GGNCC 1 cut(s) 254
SchI GAGTC 1 cut(s) 114
ScrFI CCNGG 1 cut(s) 859
SfuI TTCGAA 2 cut(s) 353, 708
SinI GGWCC 1 cut(s) 254
SmiMI CAYNNNNRTG 1 cut(s) 247
SmlI CTYRAG 1 cut(s) 464
SmoI CTYRAG 1 cut(s) 464
Sse9I AATT 4 cut(s) 211, 290, 638, 644
SsiI CCGC 3 cut(s) 71, 815, 896
SspMI CTAG 1 cut(s) 828
StyD4I CCNGG 1 cut(s) 857
StyI CCWWGG 1 cut(s) 63
TaaI ACNGT 4 cut(s) 472, 681, 802, 1045
TaiI ACGT 1 cut(s) 671
TaqI TCGA 6 cut(s) 151, 188, 201, 276, 353, 708
TasI AATT 4 cut(s) 211, 290, 638, 644
TauI GCSGC 1 cut(s) 74
TfiI GAWTC 4 cut(s) 90, 190, 334, 453
Tru1I TTAA 3 cut(s) 209, 474, 606
Tru9I TTAA 3 cut(s) 209, 474, 606
TseFI GTSAC 1 cut(s) 714
TseI GCWGC 4 cut(s) 41, 806, 988, 1033
Tsp45I GTSAC 1 cut(s) 714
TspDTI ATGAA 2 cut(s) 546, 823
TspGWI ACGGA 2 cut(s) 783, 830
VpaK11BI GGWCC 1 cut(s) 254
XapI RAATTY 1 cut(s) 211
XceI RCATGY 1 cut(s) 766
XmiI GTMKAC 1 cut(s) 797
XmnI GAANNNNTTC 1 cut(s) 58
XspI CTAG 1 cut(s) 828
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.