RLG00000010598

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000541
Physical Location & Seq
Forward (+)
2865383 .. 2867460
2078 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010598

Sequence Viewer

Length: 1083 bp
ATGGCTTCTTTCACTGTGGCCGAGAAATGCGCTCCGATTACTCGCGCCGCGGCGAAGAAGAGGGCGGCGGCGGCGGCCTTGGCCGAGGAGCAGCAGCTGGCCACTAAGAAGCGCGTCGTGCTCGGAGATCTCACCAACTTTGCAAACGTCGTCGTTTTGGCCTCAAAAAACCCCAATTCCGATTCTGCGCTAAAGAAACCCAAATGTGAAAAACGGAGAGCTGTGCTGGAACGTGACAATGAAGACCCACAGCTGTGTGGGCCTTATGCTTCTGATATCTATGCCTATCTTCGCAGAATGGAGGTGGAACCAAAAAGGAGGCCATTGCCTGATTACATGGAGAGAATTCAGAAGGATGCTATTAATGCTAATATGAGAGGGATTCTTGTGGATTGGTTGATGGAGGTTGCAGAGGAATTTAAACTTCTTCCAGACACTCTTCATCTATCTGTTTCCTATGTTGATAAATATTTGTCGATGAATGTGATCAATAAGCAGAAGCTCCAGCTATTGGGAGTTGCTTCAATGTTCATTGCCTCAAAGTATGAGGAGATTAATCCTCCACATGTGGATGAACTTAGGGACATGACAGAAAATACATACAGTAAAGCAGAGGTGATTAAGATGGAGGCTGATATCCTCAAATCCCTCAAATTTGAAATGGGGAATCCTACTGTTCGGACCTTCTTAAGAAAGTTTACGGATGTTGCTCAAAAGAATTATACAACTCCCAATTTGCAGTTTGAGTTCTTGGTTTCCTACCTTGCAGAGTTAAGCTTGTTGGATTACAAATGTGTGAAATTCCTGCCTTCTATGGTAGCTTCATCAGTTGTTTTCCTTGCAAGATTAATGATTAGATCAAAGATGAAGCCTTGGTGTTCAACATTGCAACAATATACTGGATACATTGCAGCTGATTTGAAAGATTGTGTTCTTGTCCTTCATGACTTGTACTTGGGTAGAAGAGGAGGATTGTTACAAGTTGTGCGAGAGAAGTACAGACAGCATAAGTTCAAATATGTGGCAAACCTTCCTTGCCCTCCAGAGCTACCAGCTCCTTTGTTTGATAATGTGAAGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

361

Amino Acids

41.02

Weight (kDa)

9.15

Isoelectric Point (pI)

40.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 92 - 221 2.7e-43 Cyclin, N-terminal domain
Cyclin_C PF02984 224 - 346 4.2e-33 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000541)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47210 AT1G47210 AT1G47220 AT1G47230 AT1G47230 AT2G01310 AT5G43080 AT5G43080
fragaria_vesca FvH4_2g04770 FvH4_2g04770 FvH4_2g04770 FvH4_2g33510 FvH4_2g33510 FvH4_2g33510 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33530 FvH4_2g33530
malus_domestica MD05G1092000.v1.1 MD08G1091000.v1.1 MD08G1091200.v1.1 MD10G1100200.v1.1 MD10G1100700.v1.1 MD12G1105600.v1.1 MD15G1075100.v1.1 MD15G1075200.v1.1
prunus_persica Prupe.1G428000_v2.0.a1 Prupe.1G428100_v2.0.a1 Prupe.4G285800_v2.0.a1 Prupe.8G137700_v2.0.a1 Prupe.8G137700_v2.0.a1
pyrus_communis pycom05g09170 pycom08g07360 pycom08g07370 pycom15g07000 pycom15g07020
rosa_chinensis RchiOBHm_Chr3g0465621 RchiOBHm_Chr6g0254421 RchiOBHm_Chr6g0254451 RchiOBHm_Chr6g0308961 RchiOBHm_Chr6g0308971 RchiOBHm_Chr6g0308991 RchiOBHm_Chr7g0190851
rosa_laevigata RLG00000003915 RLG00000010598 RLG00000010599 RLG00000010600 RLG00000014913
rosa_multiflora Rmu_sc0009578.1_g000002 Rmu_sc0009578.1_g000003 Rmu_sc0029942.1_g000001 Rmu_sc0036151.1_g000001 Rmu_sc0036151.1_g000002 Rmu_sc0037719.1_g000001 Rmu_sc0042877.1_g000001 Rmu_ssc0000481.1_g000003
rosa_roxburghii Rroxscaffold_7G00159740 Rroxscaffold_7G00159750 Rroxscaffold_7G00159760 Rroxscaffold_7G00159770 Rroxscaffold_7G00210810
rosa_rugosa Rorug05G0552200 Rorug05G0552300 Rorug05G0552400
rosa_samantha Rh3CG081000 Rh6AG069300 Rh6AG481300 Rh6AG481600 Rh6BG062000 Rh6BG490400 Rh6BG490500 Rh6BG490600 Rh6CG062100 Rh6CG495700 Rh6CG495900 Rh6DG059100 Rh6DG481600 Rh6DG481700 Rh6DG481800
rosa_wichuraiana Rw6G006090 Rw6G041930 Rw6G041940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 511
AccII CGCG 3 cut(s) 45, 50, 114
AciI CCGC 6 cut(s) 48, 50, 65, 68, 71, 74
AcoI YGGCCR 3 cut(s) 18, 81, 99
AcsI RAATTY 4 cut(s) 345, 416, 653, 800
AfaI GTAC 2 cut(s) 953, 998
AfiI CCNNNNNNNGG 1 cut(s) 511
AflII CTTAAG 1 cut(s) 688
AflIII ACRYGT 1 cut(s) 565
AgsI TTSAA 5 cut(s) 525, 659, 882, 922, 1015
AleI CACNNNNGTG 1 cut(s) 253
Alw21I GWGCWC 1 cut(s) 123
AlwNI CAGNNNCTG 1 cut(s) 97
AoxI GGCC 7 cut(s) 18, 75, 81, 99, 159, 260, 320
ApeKI GCWGC 3 cut(s) 91, 94, 911
ApoI RAATTY 4 cut(s) 345, 416, 653, 800
AseI ATTAAT 3 cut(s) 363, 555, 848
AspLEI GCGC 4 cut(s) 32, 47, 114, 190
AspS9I GGNCC 2 cut(s) 260, 681
AsuHPI GGTGA 2 cut(s) 124, 628
AvaII GGWCC 1 cut(s) 681
BalI TGGCCA 1 cut(s) 101
BbsI GAAGAC 1 cut(s) 249
Bbv12I GWGCWC 1 cut(s) 123
BbvI GCAGC 3 cut(s) 103, 106, 923
BccI CCATC 2 cut(s) 394, 619
BciVI GTATCC 1 cut(s) 896
BclI TGATCA 1 cut(s) 486
BfrI CTTAAG 1 cut(s) 688
BfuI GTATCC 1 cut(s) 896
BglII AGATCT 1 cut(s) 127
BisI GCNGC 9 cut(s) 48, 51, 66, 69, 72, 75, 92, 95, 912
BlsI GCNGC 9 cut(s) 49, 52, 67, 70, 73, 76, 93, 96, 913
Bme18I GGWCC 1 cut(s) 681
BmgT120I GGNCC 2 cut(s) 260, 681
BmiI GGNNCC 1 cut(s) 309
BmsI GCATC 1 cut(s) 346
BpiI GAAGAC 1 cut(s) 249
BpmI CTGGAG 2 cut(s) 488, 1026
BsaJI CCNNGG 4 cut(s) 48, 78, 84, 872
Bsc4I CCNNNNNNNGG 1 cut(s) 511
Bse1I ACTGG 1 cut(s) 904
Bse3DI GCAATG 4 cut(s) 323, 531, 884, 906
BseDI CCNNGG 4 cut(s) 48, 78, 84, 872
BseGI GGATG 3 cut(s) 361, 577, 709
BseLI CCNNNNNNNGG 1 cut(s) 511
BseMI GCAATG 4 cut(s) 323, 531, 884, 906
BseNI ACTGG 1 cut(s) 904
BseRI GAGGAG 3 cut(s) 101, 563, 981
BseXI GCAGC 3 cut(s) 103, 106, 923
Bsh1236I CGCG 3 cut(s) 45, 50, 114
BshFI GGCC 7 cut(s) 20, 77, 83, 101, 161, 262, 322
BsiHKAI GWGCWC 1 cut(s) 123
BslFI GGGAC 1 cut(s) 596
BslI CCNNNNNNNGG 1 cut(s) 511
BsmFI GGGAC 1 cut(s) 596
BsnI GGCC 7 cut(s) 20, 77, 83, 101, 161, 262, 322
Bsp1286I GDGCHC 1 cut(s) 123
Bsp143I GATC 3 cut(s) 127, 486, 857
BspACI CCGC 6 cut(s) 48, 50, 65, 68, 71, 74
BspANI GGCC 7 cut(s) 20, 77, 83, 101, 161, 262, 322
BspFNI CGCG 3 cut(s) 45, 50, 114
BspHI TCATGA 1 cut(s) 943
BspLI GGNNCC 1 cut(s) 309
BspTI CTTAAG 1 cut(s) 688
BsrDI GCAATG 4 cut(s) 323, 531, 884, 906
BsrI ACTGG 1 cut(s) 904
BssECI CCNNGG 4 cut(s) 48, 78, 84, 872
BssMI GATC 3 cut(s) 127, 486, 857
BssT1I CCWWGG 2 cut(s) 78, 872
Bst4CI ACNGT 3 cut(s) 16, 605, 676
Bst6I CTCTTC 3 cut(s) 53, 444, 958
BstAFI CTTAAG 1 cut(s) 688
BstC8I GCNNGC 1 cut(s) 99
BstDEI CTNAG 2 cut(s) 105, 578
BstDSI CCRYGG 1 cut(s) 48
BstF5I GGATG 3 cut(s) 361, 577, 709
BstFNI CGCG 3 cut(s) 45, 50, 114
BstHHI GCGC 4 cut(s) 32, 47, 114, 190
BstKTI GATC 3 cut(s) 130, 489, 860
BstMBI GATC 3 cut(s) 127, 486, 857
BstMWI GCNNNNNNNGC 6 cut(s) 71, 74, 80, 118, 259, 365
BstNSI RCATGY 1 cut(s) 569
BstUI CGCG 3 cut(s) 45, 50, 114
BstV1I GCAGC 3 cut(s) 103, 106, 923
BstV2I GAAGAC 1 cut(s) 249
BstX2I RGATCY 1 cut(s) 127
BstYI RGATCY 1 cut(s) 127
BsuI GTATCC 1 cut(s) 896
BsuRI GGCC 7 cut(s) 20, 77, 83, 101, 161, 262, 322
BtgI CCRYGG 1 cut(s) 48
BtsCI GGATG 3 cut(s) 361, 577, 709
BtsIMutI CAGTG 1 cut(s) 12
Cac8I GCNNGC 1 cut(s) 99
CaiI CAGNNNCTG 1 cut(s) 97
CciI TCATGA 1 cut(s) 943
CfoI GCGC 4 cut(s) 32, 47, 114, 190
Cfr13I GGNCC 2 cut(s) 260, 681
Cfr42I CCGCGG 1 cut(s) 51
CseI GACGC 1 cut(s) 103
Csp6I GTAC 2 cut(s) 952, 997
CviAII CATG 5 cut(s) 337, 566, 586, 944, 1080
CviQI GTAC 2 cut(s) 952, 997
DdeI CTNAG 2 cut(s) 105, 578
DpnI GATC 3 cut(s) 129, 488, 859
DpnII GATC 3 cut(s) 127, 486, 857
DraI TTTAAA 1 cut(s) 421
EaeI YGGCCR 3 cut(s) 18, 81, 99
Eam1104I CTCTTC 3 cut(s) 53, 444, 958
EarI CTCTTC 3 cut(s) 53, 444, 958
Eco130I CCWWGG 2 cut(s) 78, 872
Eco32I GATATC 2 cut(s) 277, 637
Eco47I GGWCC 1 cut(s) 681
EcoRI GAATTC 1 cut(s) 345
EcoRV GATATC 2 cut(s) 277, 637
EcoT14I CCWWGG 2 cut(s) 78, 872
ErhI CCWWGG 2 cut(s) 78, 872
FaeI CATG 5 cut(s) 340, 569, 589, 947, 1083
FaqI GGGAC 1 cut(s) 596
FatI CATG 5 cut(s) 336, 565, 585, 943, 1079
FbaI TGATCA 1 cut(s) 486
Fnu4HI GCNGC 9 cut(s) 48, 51, 66, 69, 72, 75, 92, 95, 912
FokI GGATG 3 cut(s) 368, 584, 716
Fsp4HI GCNGC 9 cut(s) 48, 51, 66, 69, 72, 75, 92, 95, 912
GlaI GCGC 4 cut(s) 31, 46, 113, 189
GluI GCNGC 9 cut(s) 48, 51, 66, 69, 72, 75, 92, 95, 912
GsuI CTGGAG 2 cut(s) 488, 1026
HaeIII GGCC 7 cut(s) 20, 77, 83, 101, 161, 262, 322
HgaI GACGC 1 cut(s) 103
HhaI GCGC 4 cut(s) 32, 47, 114, 190
Hin1II CATG 5 cut(s) 340, 569, 589, 947, 1083
Hin6I GCGC 4 cut(s) 30, 45, 112, 188
HinP1I GCGC 4 cut(s) 30, 45, 112, 188
HindIII AAGCTT 1 cut(s) 775
HinfI GANTC 3 cut(s) 182, 382, 667
HphI GGTGA 2 cut(s) 124, 628
Hpy166II GTNNAC 1 cut(s) 699
Hpy188I TCNGA 6 cut(s) 36, 125, 181, 274, 351, 681
Hpy188III TCNNGA 3 cut(s) 431, 944, 1043
Hpy8I GTNNAC 1 cut(s) 699
Hpy99I CGWCG 3 cut(s) 119, 152, 155
HpyAV CCTTC 6 cut(s) 346, 694, 819, 950, 1040, 1069
HpyCH4III ACNGT 3 cut(s) 16, 605, 676
HpyCH4IV ACGT 2 cut(s) 147, 232
HpyCH4V TGCA 7 cut(s) 143, 410, 739, 767, 842, 889, 911
HpyF10VI GCNNNNNNNGC 6 cut(s) 71, 74, 80, 118, 259, 365
HpyF3I CTNAG 2 cut(s) 105, 578
HpySE526I ACGT 2 cut(s) 147, 232
Hsp92II CATG 5 cut(s) 340, 569, 589, 947, 1083
HspAI GCGC 4 cut(s) 30, 45, 112, 188
Ksp22I TGATCA 1 cut(s) 486
KspI CCGCGG 1 cut(s) 51
Kzo9I GATC 3 cut(s) 127, 486, 857
LmnI GCTCC 4 cut(s) 37, 88, 507, 1060
LpnPI CCDG 9 cut(s) 83, 212, 342, 444, 518, 818, 885, 1056, 1065
Lsp1109I GCAGC 3 cut(s) 103, 106, 923
LweI GCATC 1 cut(s) 346
MaeII ACGT 2 cut(s) 147, 232
MaeIII GTNAC 2 cut(s) 233, 975
MalI GATC 3 cut(s) 129, 488, 859
MboI GATC 3 cut(s) 127, 486, 857
MboII GAAGA 7 cut(s) 67, 70, 254, 281, 419, 431, 975
MflI RGATCY 1 cut(s) 127
MhlI GDGCHC 1 cut(s) 123
MlsI TGGCCA 1 cut(s) 101
MluCI AATT 7 cut(s) 175, 345, 416, 653, 718, 733, 800
MluNI TGGCCA 1 cut(s) 101
MmeI TCCRAC 1 cut(s) 762
Mox20I TGGCCA 1 cut(s) 101
MscI TGGCCA 1 cut(s) 101
MseI TTAA 7 cut(s) 363, 420, 555, 621, 689, 773, 848
MslI CAYNNNNRTG 2 cut(s) 253, 570
Msp20I TGGCCA 1 cut(s) 101
MspA1I CMGCKG 4 cut(s) 50, 97, 253, 914
MspCI CTTAAG 1 cut(s) 688
MvnI CGCG 3 cut(s) 45, 50, 114
MwoI GCNNNNNNNGC 6 cut(s) 71, 74, 80, 118, 259, 365
NdeII GATC 3 cut(s) 127, 486, 857
NlaIII CATG 5 cut(s) 340, 569, 589, 947, 1083
NlaIV GGNNCC 1 cut(s) 309
NmeAIII GCCGAG 2 cut(s) 46, 109
NmuCI GTSAC 1 cut(s) 233
NspI RCATGY 1 cut(s) 569
OliI CACNNNNGTG 1 cut(s) 253
PagI TCATGA 1 cut(s) 943
PciI ACATGT 1 cut(s) 565
PfeI GAWTC 3 cut(s) 182, 382, 667
PflMI CCANNNNNTGG 1 cut(s) 511
PkrI GCNGC 9 cut(s) 49, 52, 67, 70, 73, 76, 93, 96, 913
PscI ACATGT 1 cut(s) 565
PshBI ATTAAT 3 cut(s) 363, 555, 848
PspN4I GGNNCC 1 cut(s) 309
PspPI GGNCC 2 cut(s) 260, 681
PstNI CAGNNNCTG 1 cut(s) 97
PsuI RGATCY 1 cut(s) 127
PvuII CAGCTG 3 cut(s) 97, 253, 914
RsaI GTAC 2 cut(s) 953, 998
RsaNI GTAC 2 cut(s) 952, 997
RseI CAYNNNNRTG 2 cut(s) 253, 570
SacII CCGCGG 1 cut(s) 51
SaqAI TTAA 7 cut(s) 363, 420, 555, 621, 689, 773, 848
SatI GCNGC 9 cut(s) 48, 51, 66, 69, 72, 75, 92, 95, 912
Sau3AI GATC 3 cut(s) 127, 486, 857
Sau96I GGNCC 2 cut(s) 260, 681
SduI GDGCHC 1 cut(s) 123
SfaNI GCATC 1 cut(s) 346
Sfr303I CCGCGG 1 cut(s) 51
SgrBI CCGCGG 1 cut(s) 51
SinI GGWCC 1 cut(s) 681
SmiMI CAYNNNNRTG 2 cut(s) 253, 570
SmlI CTYRAG 1 cut(s) 688
SmoI CTYRAG 1 cut(s) 688
Sse9I AATT 7 cut(s) 175, 345, 416, 653, 718, 733, 800
SsiI CCGC 6 cut(s) 48, 50, 65, 68, 71, 74
SspI AATATT 1 cut(s) 470
StyI CCWWGG 2 cut(s) 78, 872
TaaI ACNGT 3 cut(s) 16, 605, 676
TaiI ACGT 2 cut(s) 150, 235
TaqI TCGA 1 cut(s) 476
TasI AATT 7 cut(s) 175, 345, 416, 653, 718, 733, 800
TatI WGTACW 2 cut(s) 951, 996
TauI GCSGC 6 cut(s) 50, 53, 68, 71, 74, 77
TfiI GAWTC 3 cut(s) 182, 382, 667
Tru1I TTAA 7 cut(s) 363, 420, 555, 621, 689, 773, 848
Tru9I TTAA 7 cut(s) 363, 420, 555, 621, 689, 773, 848
TscAI CASTG 1 cut(s) 19
TseFI GTSAC 1 cut(s) 233
TseI GCWGC 3 cut(s) 91, 94, 911
Tsp45I GTSAC 1 cut(s) 233
TspDTI ATGAA 8 cut(s) 255, 431, 494, 520, 588, 813, 881, 932
TspGWI ACGGA 2 cut(s) 229, 716
TspRI CASTG 1 cut(s) 19
Van91I CCANNNNNTGG 1 cut(s) 511
Vha464I CTTAAG 1 cut(s) 688
VpaK11BI GGWCC 1 cut(s) 681
VspI ATTAAT 3 cut(s) 363, 555, 848
XapI RAATTY 4 cut(s) 345, 416, 653, 800
XceI RCATGY 1 cut(s) 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.