Rh6BG490500

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000541
Physical Location & Seq
Reverse (-)
69405885 .. 69408728
2844 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG490500.1

Sequence Viewer

Length: 1080 bp
ATGGCTCTTACCACCGTGGCTGAGAAATGCGAAGCTCCGATCACTCGCGCGGCGGCGAAGCGGAGAGCTCAGTCCGTTTTGGTCGAGGACAAGCAGTGGGCCACCAAGAAAAGGGCCGTGCTTGGAGAGCTTACCAGATTGACAAACGCCGTCGATAACGTCATTGATTTGGGCAACAACATTCGTGGGGTTGCGCCGCCGCAGAAACCCAAATTGGAAACCAAGAAGAAGGCTGTGAAGGCGGCGCGTGACGATGAGGACCCTCAGCTTTGTGGGGCCTATGCTGCTGACATTTATGCCTATCTCCGCCGTATGGAGGTGGAACCGAAGAGAAGGCCATTGCCTGATTACATGGAGAAGATTCAGAAGGATTCTATCAATGCAAATATGAGAGGTGTTCTTGTGGATTGGTTAGTGGAGGTTGCAGATGAATATGAGCTCCTTCCGGAGACTCTTCATCTGGCTGTGTCTTATGTTGATAAGTATCTATCCATGAATGTGGTGTTAAGGAGTGAGCTTCAGCTAGTCGGAGTGGCCTCGATCTTCATTGCCTCGAAGTATGAAGAGATTGATCCTCCAAATGTGGATGAGCTTTCTGACATTACTGAAAATACATTCACTAAACAACAGGTGATCAAGATGGAGGCTGATATACTACTATCTCTGAAATTTGAAATGGGAAATCCCAATGTTCGTACATTCTTGAGAAAATTCATTGATCTTGCCCAAGAGAGTTACTACAAAAATCCTAATATGCAGTTTGAGTCTTTGATTTACTACCTCACAGATCTAAGTTTGGTGGATTACAAACTTGTGAAGTTCTTGCCTTCTATTATAGCAGCATCGGCCGTATTTCTAGCGAGAGTTATTATTACTAGATCAAAAATGAATCCTTGGTGTCCAGCACTGCAAGAATATACTGGTTATAAGGCAGTGGATTTGAGAGAATGTGTTCTTATCATTCACGACTTGTACTTGGGTAGACGTGGCGGATCTTTGGTAGCTGTACGAGATAAATACAAACAAATTAAGGTATGTCTATCAAAGTGTTTGATTCTTAAACCCATTTTTGAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

359

Amino Acids

40.88

Weight (kDa)

8.66

Isoelectric Point (pI)

43.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 97 - 226 7.2e-42 Cyclin, N-terminal domain
Cyclin_C PF02984 229 - 344 1.1e-28 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000541)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47210 AT1G47210 AT1G47220 AT1G47230 AT1G47230 AT2G01310 AT5G43080 AT5G43080
fragaria_vesca FvH4_2g04770 FvH4_2g04770 FvH4_2g04770 FvH4_2g33510 FvH4_2g33510 FvH4_2g33510 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33530 FvH4_2g33530
malus_domestica MD05G1092000.v1.1 MD08G1091000.v1.1 MD08G1091200.v1.1 MD10G1100200.v1.1 MD10G1100700.v1.1 MD12G1105600.v1.1 MD15G1075100.v1.1 MD15G1075200.v1.1
prunus_persica Prupe.1G428000_v2.0.a1 Prupe.1G428100_v2.0.a1 Prupe.4G285800_v2.0.a1 Prupe.8G137700_v2.0.a1 Prupe.8G137700_v2.0.a1
pyrus_communis pycom05g09170 pycom08g07360 pycom08g07370 pycom15g07000 pycom15g07020
rosa_chinensis RchiOBHm_Chr3g0465621 RchiOBHm_Chr6g0254421 RchiOBHm_Chr6g0254451 RchiOBHm_Chr6g0308961 RchiOBHm_Chr6g0308971 RchiOBHm_Chr6g0308991 RchiOBHm_Chr7g0190851
rosa_laevigata RLG00000003915 RLG00000010598 RLG00000010599 RLG00000010600 RLG00000014913
rosa_multiflora Rmu_sc0009578.1_g000002 Rmu_sc0009578.1_g000003 Rmu_sc0029942.1_g000001 Rmu_sc0036151.1_g000001 Rmu_sc0036151.1_g000002 Rmu_sc0037719.1_g000001 Rmu_sc0042877.1_g000001 Rmu_ssc0000481.1_g000003
rosa_roxburghii Rroxscaffold_7G00159740 Rroxscaffold_7G00159750 Rroxscaffold_7G00159760 Rroxscaffold_7G00159770 Rroxscaffold_7G00210810
rosa_rugosa Rorug05G0552200 Rorug05G0552300 Rorug05G0552400
rosa_samantha Rh3CG081000 Rh6AG069300 Rh6AG481300 Rh6AG481600 Rh6BG062000 Rh6BG490400 Rh6BG490500 Rh6BG490600 Rh6CG062100 Rh6CG495700 Rh6CG495900 Rh6DG059100 Rh6DG481600 Rh6DG481700 Rh6DG481800
rosa_wichuraiana Rw6G006090 Rw6G041930 Rw6G041940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 927
AccI GTMKAC 1 cut(s) 982
AccII CGCG 3 cut(s) 48, 50, 247
AccIII TCCGGA 1 cut(s) 445
AciI CCGC 8 cut(s) 50, 53, 61, 197, 200, 242, 307, 990
AclWI GGATC 2 cut(s) 566, 1000
AcoI YGGCCR 1 cut(s) 846
AcsI RAATTY 2 cut(s) 668, 710
AcuI CTGAAG 1 cut(s) 503
AfaI GTAC 3 cut(s) 697, 974, 1008
AfiI CCNNNNNNNGG 3 cut(s) 111, 313, 316
AgsI TTSAA 1 cut(s) 674
AjiI CACGTC 1 cut(s) 986
AjuI GAANNNNNNNTTGG 2 cut(s) 197, 229
AluBI AGCT 9 cut(s) 35, 68, 130, 268, 439, 517, 523, 592, 1004
AluI AGCT 9 cut(s) 35, 68, 130, 268, 439, 517, 523, 592, 1004
Alw21I GWGCWC 2 cut(s) 70, 441
Alw26I GTCTC 1 cut(s) 443
AlwI GGATC 2 cut(s) 566, 1000
Aor13HI TCCGGA 1 cut(s) 445
AoxI GGCC 6 cut(s) 99, 114, 276, 335, 534, 846
ApeKI GCWGC 2 cut(s) 284, 839
ApoI RAATTY 2 cut(s) 668, 710
Asp700I GAANNNNTTC 1 cut(s) 951
AspLEI GCGC 3 cut(s) 50, 196, 247
AspS9I GGNCC 4 cut(s) 99, 114, 259, 276
AsuHPI GGTGA 1 cut(s) 643
AvaII GGWCC 1 cut(s) 259
BanII GRGCYC 2 cut(s) 70, 441
Bbv12I GWGCWC 2 cut(s) 70, 441
BbvCI CCTCAGC 1 cut(s) 264
BbvI GCAGC 2 cut(s) 271, 851
BccI CCATC 1 cut(s) 634
BceAI ACGGC 4 cut(s) 101, 134, 294, 833
BclI TGATCA 1 cut(s) 633
BcoDI GTCTC 1 cut(s) 443
BfaI CTAG 3 cut(s) 524, 857, 876
BglII AGATCT 1 cut(s) 787
BisI GCNGC 7 cut(s) 51, 54, 197, 200, 243, 285, 840
BlsI GCNGC 7 cut(s) 52, 55, 198, 201, 244, 286, 841
Bme18I GGWCC 1 cut(s) 259
BmgBI CACGTC 1 cut(s) 986
BmgT120I GGNCC 4 cut(s) 99, 114, 259, 276
BmiI GGNNCC 3 cut(s) 261, 277, 324
BmsI GCATC 1 cut(s) 851
Bpu10I CCTNAGC 1 cut(s) 264
BpuEI CTTGAG 1 cut(s) 724
BsaBI GATNNNNATC 1 cut(s) 483
BsaJI CCNNGG 2 cut(s) 15, 893
BsaWI WCCGGW 1 cut(s) 445
Bsc4I CCNNNNNNNGG 3 cut(s) 111, 313, 316
Bse1I ACTGG 1 cut(s) 925
Bse3DI GCAATG 2 cut(s) 338, 546
Bse8I GATNNNNATC 1 cut(s) 483
BseAI TCCGGA 1 cut(s) 445
BseDI CCNNGG 2 cut(s) 15, 893
BseGI GGATG 1 cut(s) 592
BseJI GATNNNNATC 1 cut(s) 483
BseLI CCNNNNNNNGG 3 cut(s) 111, 313, 316
BseMI GCAATG 2 cut(s) 338, 546
BseMII CTCAG 3 cut(s) 12, 83, 278
BseNI ACTGG 1 cut(s) 925
BseX3I CGGCCG 1 cut(s) 846
BseXI GCAGC 2 cut(s) 271, 851
Bsh1236I CGCG 3 cut(s) 48, 50, 247
Bsh1285I CGRYCG 1 cut(s) 849
BshFI GGCC 6 cut(s) 101, 116, 278, 337, 536, 848
BsiEI CGRYCG 1 cut(s) 849
BsiHKAI GWGCWC 2 cut(s) 70, 441
BsiSI CCGG 1 cut(s) 446
BslI CCNNNNNNNGG 3 cut(s) 111, 313, 316
BsmAI GTCTC 1 cut(s) 443
BsnI GGCC 6 cut(s) 101, 116, 278, 337, 536, 848
Bsp1286I GDGCHC 2 cut(s) 70, 441
Bsp13I TCCGGA 1 cut(s) 445
Bsp143I GATC 8 cut(s) 39, 540, 571, 633, 718, 787, 878, 992
BspACI CCGC 8 cut(s) 50, 53, 61, 197, 200, 242, 307, 990
BspANI GGCC 6 cut(s) 101, 116, 278, 337, 536, 848
BspCNI CTCAG 3 cut(s) 13, 82, 277
BspEI TCCGGA 1 cut(s) 445
BspFNI CGCG 3 cut(s) 48, 50, 247
BspLI GGNNCC 3 cut(s) 261, 277, 324
BspPI GGATC 2 cut(s) 566, 1000
BsrDI GCAATG 2 cut(s) 338, 546
BsrI ACTGG 1 cut(s) 925
BssECI CCNNGG 2 cut(s) 15, 893
BssMI GATC 8 cut(s) 39, 540, 571, 633, 718, 787, 878, 992
BssT1I CCWWGG 1 cut(s) 893
Bst4CI ACNGT 1 cut(s) 16
Bst6I CTCTTC 3 cut(s) 323, 459, 558
BstDEI CTNAG 4 cut(s) 21, 69, 264, 791
BstDSI CCRYGG 1 cut(s) 15
BstF5I GGATG 1 cut(s) 592
BstFNI CGCG 3 cut(s) 48, 50, 247
BstHHI GCGC 3 cut(s) 50, 196, 247
BstKTI GATC 8 cut(s) 42, 543, 574, 636, 721, 790, 881, 995
BstMAI GTCTC 1 cut(s) 443
BstMBI GATC 8 cut(s) 39, 540, 571, 633, 718, 787, 878, 992
BstMCI CGRYCG 1 cut(s) 849
BstMWI GCNNNNNNNGC 4 cut(s) 127, 239, 284, 845
BstUI CGCG 3 cut(s) 48, 50, 247
BstV1I GCAGC 2 cut(s) 271, 851
BstX2I RGATCY 2 cut(s) 787, 992
BstXI CCANNNNNNTGG 1 cut(s) 499
BstYI RGATCY 2 cut(s) 787, 992
BstZI CGGCCG 1 cut(s) 846
BsuRI GGCC 6 cut(s) 101, 116, 278, 337, 536, 848
BtgI CCRYGG 1 cut(s) 15
BtrI CACGTC 1 cut(s) 986
BtsCI GGATG 1 cut(s) 592
BtsI GCAGTG 3 cut(s) 101, 905, 939
BtsIMutI CAGTG 3 cut(s) 101, 905, 939
CfoI GCGC 3 cut(s) 50, 196, 247
Cfr13I GGNCC 4 cut(s) 99, 114, 259, 276
Csp6I GTAC 3 cut(s) 696, 973, 1007
CspCI CAANNNNNGTGG 2 cut(s) 166, 201
CviAII CATG 2 cut(s) 352, 493
CviQI GTAC 3 cut(s) 696, 973, 1007
DdeI CTNAG 4 cut(s) 21, 69, 264, 791
DpnI GATC 8 cut(s) 41, 542, 573, 635, 720, 789, 880, 994
DpnII GATC 8 cut(s) 39, 540, 571, 633, 718, 787, 878, 992
EaeI YGGCCR 1 cut(s) 846
EagI CGGCCG 1 cut(s) 846
Eam1104I CTCTTC 3 cut(s) 323, 459, 558
EarI CTCTTC 3 cut(s) 323, 459, 558
EciI GGCGGA 2 cut(s) 296, 1005
Ecl136II GAGCTC 2 cut(s) 68, 439
EclXI CGGCCG 1 cut(s) 846
Eco130I CCWWGG 1 cut(s) 893
Eco24I GRGCYC 2 cut(s) 70, 441
Eco47I GGWCC 1 cut(s) 259
Eco52I CGGCCG 1 cut(s) 846
Eco53kI GAGCTC 2 cut(s) 68, 439
Eco57I CTGAAG 1 cut(s) 503
EcoICRI GAGCTC 2 cut(s) 68, 439
EcoO109I RGGNCCY 2 cut(s) 259, 276
EcoT14I CCWWGG 1 cut(s) 893
EcoT38I GRGCYC 2 cut(s) 70, 441
ErhI CCWWGG 1 cut(s) 893
FaeI CATG 2 cut(s) 355, 496
FatI CATG 2 cut(s) 351, 492
FbaI TGATCA 1 cut(s) 633
FblI GTMKAC 1 cut(s) 982
Fnu4HI GCNGC 7 cut(s) 51, 54, 197, 200, 243, 285, 840
FokI GGATG 1 cut(s) 599
FriOI GRGCYC 2 cut(s) 70, 441
Fsp4HI GCNGC 7 cut(s) 51, 54, 197, 200, 243, 285, 840
FspBI CTAG 3 cut(s) 524, 857, 876
GlaI GCGC 3 cut(s) 49, 195, 246
GluI GCNGC 7 cut(s) 51, 54, 197, 200, 243, 285, 840
HaeIII GGCC 6 cut(s) 101, 116, 278, 337, 536, 848
HapII CCGG 1 cut(s) 446
HhaI GCGC 3 cut(s) 50, 196, 247
Hin1II CATG 2 cut(s) 355, 496
Hin6I GCGC 3 cut(s) 48, 194, 245
HinP1I GCGC 3 cut(s) 48, 194, 245
HinfI GANTC 6 cut(s) 361, 371, 451, 764, 889, 1054
HpaII CCGG 1 cut(s) 446
HphI GGTGA 1 cut(s) 643
Hpy166II GTNNAC 1 cut(s) 983
Hpy188I TCNGA 5 cut(s) 39, 366, 530, 598, 666
Hpy188III TCNNGA 4 cut(s) 446, 637, 703, 965
Hpy8I GTNNAC 1 cut(s) 983
Hpy99I CGWCG 1 cut(s) 155
HpyAV CCTTC 6 cut(s) 223, 232, 327, 361, 452, 837
HpyCH4III ACNGT 1 cut(s) 16
HpyCH4IV ACGT 2 cut(s) 159, 985
HpyCH4V TGCA 4 cut(s) 383, 425, 757, 910
HpyF10VI GCNNNNNNNGC 4 cut(s) 127, 239, 284, 845
HpyF3I CTNAG 4 cut(s) 21, 69, 264, 791
HpySE526I ACGT 2 cut(s) 159, 985
Hsp92II CATG 2 cut(s) 355, 496
HspAI GCGC 3 cut(s) 48, 194, 245
Kpn2I TCCGGA 1 cut(s) 445
Ksp22I TGATCA 1 cut(s) 633
Kzo9I GATC 8 cut(s) 39, 540, 571, 633, 718, 787, 878, 992
LmnI GCTCC 2 cut(s) 40, 444
LpnPI CCDG 7 cut(s) 148, 357, 446, 459, 614, 906, 915
Lsp1109I GCAGC 2 cut(s) 271, 851
LweI GCATC 1 cut(s) 851
MaeI CTAG 3 cut(s) 524, 857, 876
MaeII ACGT 2 cut(s) 159, 985
MaeIII GTNAC 2 cut(s) 248, 734
MalI GATC 8 cut(s) 41, 542, 573, 635, 720, 789, 880, 994
MboI GATC 8 cut(s) 39, 540, 571, 633, 718, 787, 878, 992
MboII GAAGA 6 cut(s) 238, 340, 370, 446, 535, 575
MflI RGATCY 2 cut(s) 787, 992
MhlI GDGCHC 2 cut(s) 70, 441
MluCI AATT 4 cut(s) 212, 668, 710, 1026
MlyI GAGTC 2 cut(s) 445, 773
MmeI TCCRAC 1 cut(s) 508
MroI TCCGGA 1 cut(s) 445
MroXI GAANNNNTTC 1 cut(s) 951
MseI TTAA 3 cut(s) 506, 1029, 1059
MslI CAYNNNNRTG 1 cut(s) 497
MspI CCGG 1 cut(s) 446
MvnI CGCG 3 cut(s) 48, 50, 247
MwoI GCNNNNNNNGC 4 cut(s) 127, 239, 284, 845
NdeII GATC 8 cut(s) 39, 540, 571, 633, 718, 787, 878, 992
NlaIII CATG 2 cut(s) 355, 496
NlaIV GGNNCC 3 cut(s) 261, 277, 324
NmuCI GTSAC 1 cut(s) 248
PdmI GAANNNNTTC 1 cut(s) 951
PfeI GAWTC 4 cut(s) 361, 371, 889, 1054
PkrI GCNGC 7 cut(s) 52, 55, 198, 201, 244, 286, 841
PleI GAGTC 2 cut(s) 445, 772
PpsI GAGTC 2 cut(s) 445, 772
PpuMI RGGWCCY 1 cut(s) 259
PsiI TTATAA 1 cut(s) 927
Psp124BI GAGCTC 2 cut(s) 70, 441
Psp5II RGGWCCY 1 cut(s) 259
PspN4I GGNNCC 3 cut(s) 261, 277, 324
PspPI GGNCC 4 cut(s) 99, 114, 259, 276
PspPPI RGGWCCY 1 cut(s) 259
PsuI RGATCY 2 cut(s) 787, 992
RsaI GTAC 3 cut(s) 697, 974, 1008
RsaNI GTAC 3 cut(s) 696, 973, 1007
RseI CAYNNNNRTG 1 cut(s) 497
SacI GAGCTC 2 cut(s) 70, 441
SaqAI TTAA 3 cut(s) 506, 1029, 1059
SatI GCNGC 7 cut(s) 51, 54, 197, 200, 243, 285, 840
Sau3AI GATC 8 cut(s) 39, 540, 571, 633, 718, 787, 878, 992
Sau96I GGNCC 4 cut(s) 99, 114, 259, 276
SchI GAGTC 2 cut(s) 445, 773
SduI GDGCHC 2 cut(s) 70, 441
SfaNI GCATC 1 cut(s) 851
SinI GGWCC 1 cut(s) 259
SmiMI CAYNNNNRTG 1 cut(s) 497
SmlI CTYRAG 1 cut(s) 703
SmoI CTYRAG 1 cut(s) 703
Sse9I AATT 4 cut(s) 212, 668, 710, 1026
SsiI CCGC 8 cut(s) 50, 53, 61, 197, 200, 242, 307, 990
SspMI CTAG 3 cut(s) 524, 857, 876
SstI GAGCTC 2 cut(s) 70, 441
StyI CCWWGG 1 cut(s) 893
TaaI ACNGT 1 cut(s) 16
TaiI ACGT 2 cut(s) 162, 988
TaqI TCGA 4 cut(s) 84, 153, 539, 554
TasI AATT 4 cut(s) 212, 668, 710, 1026
TatI WGTACW 1 cut(s) 972
TauI GCSGC 5 cut(s) 53, 56, 199, 202, 245
TfiI GAWTC 4 cut(s) 361, 371, 889, 1054
Tru1I TTAA 3 cut(s) 506, 1029, 1059
Tru9I TTAA 3 cut(s) 506, 1029, 1059
TscAI CASTG 3 cut(s) 101, 912, 939
TseFI GTSAC 1 cut(s) 248
TseI GCWGC 2 cut(s) 284, 839
Tsp45I GTSAC 1 cut(s) 248
TspDTI ATGAA 7 cut(s) 444, 446, 509, 535, 576, 703, 902
TspGWI ACGGA 1 cut(s) 64
TspRI CASTG 3 cut(s) 101, 912, 939
VpaK11BI GGWCC 1 cut(s) 259
XapI RAATTY 2 cut(s) 668, 710
XmiI GTMKAC 1 cut(s) 982
XmnI GAANNNNTTC 1 cut(s) 951
XspI CTAG 3 cut(s) 524, 857, 876
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.