RH6DG481700

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: Sequence Only
Biological Identity
rosa_samantha
Unknown
OG0000541
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG481700.1

Sequence Viewer

Length: 1089 bp
ATGGCTCTTACCACCGTGGCTGAGAAATGCGAAGCTCCGATCACTCGCGCGGCGGCGAAGCGGAGAGCTCAGTCCGTTTTGGTCGAGGACAAGCAATGGGCCACCAAGAAAAGGGCCGTGCTTGGAGAGCTTACCAGATTGACAAACGCCGTCGATAACGTCATTGATTTGGGCAACAACATTCGTGGGGTTGCGCCGCCGCAGAAACCCAAATTGGAAACCAAGAAGAAGGCTGTGAAGGCGGCGCGTGACGATGAGGACCCTCAGCTTTGTGGGGCCTATGCTGCCGACATTTATGCCTATCTCCGCCGTATGGAGGTGGAACCGAAGAGAAGGCCATTGCCTGATTACATGGAGAAGATTCAGAAGGATTCTATCAATGCAAATATGAGAGGTGTTCTTGTGGATTGGTTAGTGGAGGTTGCAGATGAATATGAGCTCCTTCCGGAGACTCTTCATCTGGCTGTGTCTTATGTTGATAAGTATCTCTCCATGAATGTGGTGTTAAGGAGTGAGCTTCAGCTAGTCGGAGTGGCCTCAATTTTCATTGCCTCGAAGTATGAAGAGATTGATCCTCCAAATGTGGATGAGCTTTCTGACATTACTGAAAATACATTCACTAAACAACAGGTGATCAAGATGGAGGCTGATATACTACTATCTCTGAAATTTGAAATGGGAAATCCCAATGTTCGTACATTCTTGAGAAAATTCATTGATCTTGCCCAAGAGAGTTACTACAAAAATCCTAATTTGCAGTTCGAGTCTTTGATTTACTACCTCACAGATCTAAGTTTGGTGGATTACAAACTTGTGAAGTTCTTGCCTTCTATTATAGCAGCATCGGCTGTATTTCTAGCGAGAGTTATTATTACTAGATCAAAAATGAATCCTTGGTGTCCAGCACTGCAAGAATATACTGGTTATAAGGCAGTGGATTTGAGAGAATGTGTTCTTATCATTCACGACTTGTACTTGGGTAGACGTGGCGGATCTTTGGTAGCTGTACGAGATAAATACAAACAAATTAAGTTAAAATGTGTGGCAAAAATGCATTGCCCTTCACAGTTACCACATTCCTTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

362

Amino Acids

41.16

Weight (kDa)

8.67

Isoelectric Point (pI)

46.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 97 - 226 7.3e-42 Cyclin, N-terminal domain
Cyclin_C PF02984 229 - 353 1.8e-30 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000541)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47210 AT1G47210 AT1G47220 AT1G47230 AT1G47230 AT2G01310 AT5G43080 AT5G43080
fragaria_vesca FvH4_2g04770 FvH4_2g04770 FvH4_2g04770 FvH4_2g33510 FvH4_2g33510 FvH4_2g33510 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33530 FvH4_2g33530
malus_domestica MD05G1092000.v1.1 MD08G1091000.v1.1 MD08G1091200.v1.1 MD10G1100200.v1.1 MD10G1100700.v1.1 MD12G1105600.v1.1 MD15G1075100.v1.1 MD15G1075200.v1.1
prunus_persica Prupe.1G428000_v2.0.a1 Prupe.1G428100_v2.0.a1 Prupe.4G285800_v2.0.a1 Prupe.8G137700_v2.0.a1 Prupe.8G137700_v2.0.a1
pyrus_communis pycom05g09170 pycom08g07360 pycom08g07370 pycom15g07000 pycom15g07020
rosa_chinensis RchiOBHm_Chr3g0465621 RchiOBHm_Chr6g0254421 RchiOBHm_Chr6g0254451 RchiOBHm_Chr6g0308961 RchiOBHm_Chr6g0308971 RchiOBHm_Chr6g0308991 RchiOBHm_Chr7g0190851
rosa_laevigata RLG00000003915 RLG00000010598 RLG00000010599 RLG00000010600 RLG00000014913
rosa_multiflora Rmu_sc0009578.1_g000002 Rmu_sc0009578.1_g000003 Rmu_sc0029942.1_g000001 Rmu_sc0036151.1_g000001 Rmu_sc0036151.1_g000002 Rmu_sc0037719.1_g000001 Rmu_sc0042877.1_g000001 Rmu_ssc0000481.1_g000003
rosa_roxburghii Rroxscaffold_7G00159740 Rroxscaffold_7G00159750 Rroxscaffold_7G00159760 Rroxscaffold_7G00159770 Rroxscaffold_7G00210810
rosa_rugosa Rorug05G0552200 Rorug05G0552300 Rorug05G0552400
rosa_samantha Rh3CG081000 Rh6AG069300 Rh6AG481300 Rh6AG481600 Rh6BG062000 Rh6BG490400 Rh6BG490500 Rh6BG490600 Rh6CG062100 Rh6CG495700 Rh6CG495900 Rh6DG059100 Rh6DG481600 Rh6DG481700 Rh6DG481800
rosa_wichuraiana Rw6G006090 Rw6G041930 Rw6G041940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 927
AccI GTMKAC 1 cut(s) 982
AccII CGCG 3 cut(s) 48, 50, 247
AccIII TCCGGA 1 cut(s) 445
AciI CCGC 8 cut(s) 50, 53, 61, 197, 200, 242, 307, 990
AclWI GGATC 2 cut(s) 566, 1000
AcsI RAATTY 2 cut(s) 668, 710
AcuI CTGAAG 1 cut(s) 503
AfaI GTAC 3 cut(s) 697, 974, 1008
AfiI CCNNNNNNNGG 3 cut(s) 111, 313, 316
AgsI TTSAA 1 cut(s) 674
AjiI CACGTC 1 cut(s) 986
AjuI GAANNNNNNNTTGG 2 cut(s) 197, 229
AluBI AGCT 9 cut(s) 35, 68, 130, 268, 439, 517, 523, 592, 1004
AluI AGCT 9 cut(s) 35, 68, 130, 268, 439, 517, 523, 592, 1004
Alw21I GWGCWC 2 cut(s) 70, 441
Alw26I GTCTC 1 cut(s) 443
AlwI GGATC 2 cut(s) 566, 1000
Aor13HI TCCGGA 1 cut(s) 445
AoxI GGCC 5 cut(s) 99, 114, 276, 335, 534
ApeKI GCWGC 2 cut(s) 284, 839
ApoI RAATTY 2 cut(s) 668, 710
Asp700I GAANNNNTTC 1 cut(s) 951
AspLEI GCGC 3 cut(s) 50, 196, 247
AspS9I GGNCC 4 cut(s) 99, 114, 259, 276
AsuHPI GGTGA 1 cut(s) 643
AvaII GGWCC 1 cut(s) 259
BanII GRGCYC 2 cut(s) 70, 441
Bbv12I GWGCWC 2 cut(s) 70, 441
BbvCI CCTCAGC 1 cut(s) 264
BbvI GCAGC 2 cut(s) 271, 851
BccI CCATC 1 cut(s) 634
BceAI ACGGC 3 cut(s) 101, 134, 294
BcgI CGANNNNNNTGC 2 cut(s) 278, 312
BclI TGATCA 1 cut(s) 633
BcoDI GTCTC 1 cut(s) 443
BfaI CTAG 3 cut(s) 524, 857, 876
BglII AGATCT 1 cut(s) 787
BisI GCNGC 7 cut(s) 51, 54, 197, 200, 243, 285, 840
BlsI GCNGC 7 cut(s) 52, 55, 198, 201, 244, 286, 841
Bme18I GGWCC 1 cut(s) 259
BmgBI CACGTC 1 cut(s) 986
BmgT120I GGNCC 4 cut(s) 99, 114, 259, 276
BmiI GGNNCC 3 cut(s) 261, 277, 324
BmsI GCATC 1 cut(s) 851
Bpu10I CCTNAGC 1 cut(s) 264
BpuEI CTTGAG 1 cut(s) 724
BsaBI GATNNNNATC 1 cut(s) 483
BsaJI CCNNGG 2 cut(s) 15, 893
BsaWI WCCGGW 1 cut(s) 445
Bsc4I CCNNNNNNNGG 3 cut(s) 111, 313, 316
Bse1I ACTGG 1 cut(s) 925
Bse3DI GCAATG 4 cut(s) 101, 338, 546, 1054
Bse8I GATNNNNATC 1 cut(s) 483
BseAI TCCGGA 1 cut(s) 445
BseDI CCNNGG 2 cut(s) 15, 893
BseGI GGATG 1 cut(s) 592
BseJI GATNNNNATC 1 cut(s) 483
BseLI CCNNNNNNNGG 3 cut(s) 111, 313, 316
BseMI GCAATG 4 cut(s) 101, 338, 546, 1054
BseMII CTCAG 3 cut(s) 12, 83, 278
BseNI ACTGG 1 cut(s) 925
BseXI GCAGC 2 cut(s) 271, 851
Bsh1236I CGCG 3 cut(s) 48, 50, 247
BshFI GGCC 5 cut(s) 101, 116, 278, 337, 536
BsiHKAI GWGCWC 2 cut(s) 70, 441
BsiSI CCGG 1 cut(s) 446
BslI CCNNNNNNNGG 3 cut(s) 111, 313, 316
BsmAI GTCTC 1 cut(s) 443
BsnI GGCC 5 cut(s) 101, 116, 278, 337, 536
Bsp1286I GDGCHC 2 cut(s) 70, 441
Bsp13I TCCGGA 1 cut(s) 445
Bsp143I GATC 7 cut(s) 39, 571, 633, 718, 787, 878, 992
BspACI CCGC 8 cut(s) 50, 53, 61, 197, 200, 242, 307, 990
BspANI GGCC 5 cut(s) 101, 116, 278, 337, 536
BspCNI CTCAG 3 cut(s) 13, 82, 277
BspEI TCCGGA 1 cut(s) 445
BspFNI CGCG 3 cut(s) 48, 50, 247
BspLI GGNNCC 3 cut(s) 261, 277, 324
BspPI GGATC 2 cut(s) 566, 1000
BsrDI GCAATG 4 cut(s) 101, 338, 546, 1054
BsrI ACTGG 1 cut(s) 925
BssECI CCNNGG 2 cut(s) 15, 893
BssMI GATC 7 cut(s) 39, 571, 633, 718, 787, 878, 992
BssT1I CCWWGG 1 cut(s) 893
Bst4CI ACNGT 2 cut(s) 16, 1068
Bst6I CTCTTC 3 cut(s) 323, 459, 558
BstDEI CTNAG 4 cut(s) 21, 69, 264, 791
BstDSI CCRYGG 1 cut(s) 15
BstF5I GGATG 1 cut(s) 592
BstFNI CGCG 3 cut(s) 48, 50, 247
BstHHI GCGC 3 cut(s) 50, 196, 247
BstKTI GATC 7 cut(s) 42, 574, 636, 721, 790, 881, 995
BstMAI GTCTC 1 cut(s) 443
BstMBI GATC 7 cut(s) 39, 571, 633, 718, 787, 878, 992
BstMWI GCNNNNNNNGC 4 cut(s) 127, 239, 284, 845
BstUI CGCG 3 cut(s) 48, 50, 247
BstV1I GCAGC 2 cut(s) 271, 851
BstX2I RGATCY 2 cut(s) 787, 992
BstXI CCANNNNNNTGG 1 cut(s) 499
BstYI RGATCY 2 cut(s) 787, 992
BsuRI GGCC 5 cut(s) 101, 116, 278, 337, 536
BtgI CCRYGG 1 cut(s) 15
BtrI CACGTC 1 cut(s) 986
BtsCI GGATG 1 cut(s) 592
BtsI GCAGTG 2 cut(s) 905, 939
BtsIMutI CAGTG 2 cut(s) 905, 939
CfoI GCGC 3 cut(s) 50, 196, 247
Cfr13I GGNCC 4 cut(s) 99, 114, 259, 276
Csp6I GTAC 3 cut(s) 696, 973, 1007
CspCI CAANNNNNGTGG 3 cut(s) 166, 201, 1062
CviAII CATG 2 cut(s) 352, 493
CviQI GTAC 3 cut(s) 696, 973, 1007
DdeI CTNAG 4 cut(s) 21, 69, 264, 791
DpnI GATC 7 cut(s) 41, 573, 635, 720, 789, 880, 994
DpnII GATC 7 cut(s) 39, 571, 633, 718, 787, 878, 992
Eam1104I CTCTTC 3 cut(s) 323, 459, 558
EarI CTCTTC 3 cut(s) 323, 459, 558
EciI GGCGGA 2 cut(s) 296, 1005
Ecl136II GAGCTC 2 cut(s) 68, 439
Eco130I CCWWGG 1 cut(s) 893
Eco24I GRGCYC 2 cut(s) 70, 441
Eco47I GGWCC 1 cut(s) 259
Eco53kI GAGCTC 2 cut(s) 68, 439
Eco57I CTGAAG 1 cut(s) 503
EcoICRI GAGCTC 2 cut(s) 68, 439
EcoO109I RGGNCCY 2 cut(s) 259, 276
EcoT14I CCWWGG 1 cut(s) 893
EcoT22I ATGCAT 1 cut(s) 1056
EcoT38I GRGCYC 2 cut(s) 70, 441
ErhI CCWWGG 1 cut(s) 893
FaeI CATG 2 cut(s) 355, 496
FatI CATG 2 cut(s) 351, 492
FbaI TGATCA 1 cut(s) 633
FblI GTMKAC 1 cut(s) 982
Fnu4HI GCNGC 7 cut(s) 51, 54, 197, 200, 243, 285, 840
FokI GGATG 1 cut(s) 599
FriOI GRGCYC 2 cut(s) 70, 441
Fsp4HI GCNGC 7 cut(s) 51, 54, 197, 200, 243, 285, 840
FspBI CTAG 3 cut(s) 524, 857, 876
GlaI GCGC 3 cut(s) 49, 195, 246
GluI GCNGC 7 cut(s) 51, 54, 197, 200, 243, 285, 840
HaeIII GGCC 5 cut(s) 101, 116, 278, 337, 536
HapII CCGG 1 cut(s) 446
HhaI GCGC 3 cut(s) 50, 196, 247
Hin1II CATG 2 cut(s) 355, 496
Hin6I GCGC 3 cut(s) 48, 194, 245
HinP1I GCGC 3 cut(s) 48, 194, 245
HinfI GANTC 5 cut(s) 361, 371, 451, 764, 889
HpaII CCGG 1 cut(s) 446
HphI GGTGA 1 cut(s) 643
Hpy166II GTNNAC 1 cut(s) 983
Hpy188I TCNGA 5 cut(s) 39, 366, 530, 598, 666
Hpy188III TCNNGA 4 cut(s) 446, 637, 703, 965
Hpy8I GTNNAC 1 cut(s) 983
Hpy99I CGWCG 1 cut(s) 155
HpyAV CCTTC 7 cut(s) 223, 232, 327, 361, 452, 837, 1071
HpyCH4III ACNGT 2 cut(s) 16, 1068
HpyCH4IV ACGT 2 cut(s) 159, 985
HpyCH4V TGCA 5 cut(s) 383, 425, 757, 910, 1054
HpyF10VI GCNNNNNNNGC 4 cut(s) 127, 239, 284, 845
HpyF3I CTNAG 4 cut(s) 21, 69, 264, 791
HpySE526I ACGT 2 cut(s) 159, 985
Hsp92II CATG 2 cut(s) 355, 496
HspAI GCGC 3 cut(s) 48, 194, 245
Kpn2I TCCGGA 1 cut(s) 445
Ksp22I TGATCA 1 cut(s) 633
Kzo9I GATC 7 cut(s) 39, 571, 633, 718, 787, 878, 992
LmnI GCTCC 2 cut(s) 40, 444
LpnPI CCDG 7 cut(s) 148, 357, 446, 459, 614, 906, 915
Lsp1109I GCAGC 2 cut(s) 271, 851
LweI GCATC 1 cut(s) 851
MaeI CTAG 3 cut(s) 524, 857, 876
MaeII ACGT 2 cut(s) 159, 985
MaeIII GTNAC 3 cut(s) 248, 734, 1068
MalI GATC 7 cut(s) 41, 573, 635, 720, 789, 880, 994
MboI GATC 7 cut(s) 39, 571, 633, 718, 787, 878, 992
MboII GAAGA 5 cut(s) 238, 340, 370, 446, 575
MflI RGATCY 2 cut(s) 787, 992
MhlI GDGCHC 2 cut(s) 70, 441
MluCI AATT 6 cut(s) 212, 540, 668, 710, 751, 1026
MlyI GAGTC 2 cut(s) 445, 773
MmeI TCCRAC 1 cut(s) 508
Mph1103I ATGCAT 1 cut(s) 1056
MroI TCCGGA 1 cut(s) 445
MroXI GAANNNNTTC 1 cut(s) 951
MseI TTAA 3 cut(s) 506, 1029, 1034
MslI CAYNNNNRTG 1 cut(s) 497
MspI CCGG 1 cut(s) 446
MvnI CGCG 3 cut(s) 48, 50, 247
MwoI GCNNNNNNNGC 4 cut(s) 127, 239, 284, 845
NdeII GATC 7 cut(s) 39, 571, 633, 718, 787, 878, 992
NlaIII CATG 2 cut(s) 355, 496
NlaIV GGNNCC 3 cut(s) 261, 277, 324
NmuCI GTSAC 1 cut(s) 248
NsiI ATGCAT 1 cut(s) 1056
PdmI GAANNNNTTC 1 cut(s) 951
PfeI GAWTC 3 cut(s) 361, 371, 889
PkrI GCNGC 7 cut(s) 52, 55, 198, 201, 244, 286, 841
PleI GAGTC 2 cut(s) 445, 772
PpsI GAGTC 2 cut(s) 445, 772
PpuMI RGGWCCY 1 cut(s) 259
PsiI TTATAA 1 cut(s) 927
Psp124BI GAGCTC 2 cut(s) 70, 441
Psp5II RGGWCCY 1 cut(s) 259
PspN4I GGNNCC 3 cut(s) 261, 277, 324
PspPI GGNCC 4 cut(s) 99, 114, 259, 276
PspPPI RGGWCCY 1 cut(s) 259
PsuI RGATCY 2 cut(s) 787, 992
RsaI GTAC 3 cut(s) 697, 974, 1008
RsaNI GTAC 3 cut(s) 696, 973, 1007
RseI CAYNNNNRTG 1 cut(s) 497
SacI GAGCTC 2 cut(s) 70, 441
SaqAI TTAA 3 cut(s) 506, 1029, 1034
SatI GCNGC 7 cut(s) 51, 54, 197, 200, 243, 285, 840
Sau3AI GATC 7 cut(s) 39, 571, 633, 718, 787, 878, 992
Sau96I GGNCC 4 cut(s) 99, 114, 259, 276
SchI GAGTC 2 cut(s) 445, 773
SduI GDGCHC 2 cut(s) 70, 441
SfaNI GCATC 1 cut(s) 851
SinI GGWCC 1 cut(s) 259
SmiMI CAYNNNNRTG 1 cut(s) 497
SmlI CTYRAG 1 cut(s) 703
SmoI CTYRAG 1 cut(s) 703
Sse9I AATT 6 cut(s) 212, 540, 668, 710, 751, 1026
SsiI CCGC 8 cut(s) 50, 53, 61, 197, 200, 242, 307, 990
SspMI CTAG 3 cut(s) 524, 857, 876
SstI GAGCTC 2 cut(s) 70, 441
StyI CCWWGG 1 cut(s) 893
TaaI ACNGT 2 cut(s) 16, 1068
TaiI ACGT 2 cut(s) 162, 988
TaqI TCGA 4 cut(s) 84, 153, 554, 762
TasI AATT 6 cut(s) 212, 540, 668, 710, 751, 1026
TatI WGTACW 1 cut(s) 972
TauI GCSGC 5 cut(s) 53, 56, 199, 202, 245
TfiI GAWTC 3 cut(s) 361, 371, 889
Tru1I TTAA 3 cut(s) 506, 1029, 1034
Tru9I TTAA 3 cut(s) 506, 1029, 1034
TscAI CASTG 2 cut(s) 912, 939
TseFI GTSAC 1 cut(s) 248
TseI GCWGC 2 cut(s) 284, 839
Tsp45I GTSAC 1 cut(s) 248
TspDTI ATGAA 7 cut(s) 444, 446, 509, 535, 576, 703, 902
TspGWI ACGGA 1 cut(s) 64
TspRI CASTG 2 cut(s) 912, 939
VpaK11BI GGWCC 1 cut(s) 259
XapI RAATTY 2 cut(s) 668, 710
XmiI GTMKAC 1 cut(s) 982
XmnI GAANNNNTTC 1 cut(s) 951
XspI CTAG 3 cut(s) 524, 857, 876
Zsp2I ATGCAT 1 cut(s) 1056
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.