Rroxscaffold_7G00159740

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000541
Physical Location & Seq
Forward (+)
2833660 .. 2836812
3153 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00159740.1

Sequence Viewer

Length: 1143 bp
ATGGCTTCTTTCAATGTGGCTGAGAAATGCGCTCCGCTTACGCGCGCCGCTGCGAAGAGGAGGGCGGTGGCGGCCTTGGCCGAGGAGCAGCAGCTGGCGACTAAGAAGCGCGCCGTGCTCGGAGATCTCACCAACTTTGCAAACGTCGTCGTTTTGGCCTCAAAAAACCCCAATTCCGATTCTGCGCTAAAGCAACCCAAACGGAGAGCTGTGCTGGAACGTGACAATGAAGACCCACGGCTTTGTGGGCCTTATGCTTCTGATATCTATGCCTATCTTCGCAGAATGGAGCTGGATAGTGAGCATGGTGTTTTGGGTTCTATGGGTAATGGGTTTGATTTGGTAATAGGAATTGGCTATAAATTGGAACCAAAAAGGAGGCCATTGCCTGATTACATGGAGAGAATTCAGAAGGATGCTATTAATGCTAATATGAGAGGGATTCTTGTGGATTGGTTGGTGGAGGTTGCAGATGAACTTAAACTTCTTCCAGACACTCTTCATCTATCTGTTTTCTATGTTGATAAATATTTGTCGATGAATGTGATCAATAAGCAGAAGCTCCAGCTATTGGGAGTTGCTTCAATGTTCATTGCCTCAAAGTATGAGGAGATTAATCCTCCACATGTGGATGAACTTAGTGACATGGCAGAAAATACATACAGTAAAGCAGAGGTGATCAAGATGGAGGCTGATATCCTCAAATCCCTCAAATTTGAAATGGGGAATCCTACTGTTCGGACCTTCTTAAGAAAGTTTATGGATGTTGCTCAAGGGAATTATACAACTCCCAATTTGCAGTTTGAGTTCTTGGTTTCCTACCTTGCAGAGTTAAGCTTGTTGGATTACAAATGTGTGAAATTCTTGCCTTCTATGGTAGCTTCATCAGTTGTTTTCCTTGCAAGATTAATGATTAGATCAAAGATGAATCCTTGGTGTTCAACATTGCAACAATATACTGGATACATTGCAGCTGATTTGAAAGATTGTGTTCTTGTCCTTCATGACTTGTACTTGGGTAGAAGAGGAGGATTGTTACAAGTTGTGCGAGAGAAGTACAGACAGCATAAGTTCAAATATGTGGCAAATCTTCCCTGCCCTCCAGAGCTACCAGCTCCTTTGTTTGATAATGTGAAGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

380

Amino Acids

42.95

Weight (kDa)

8.8

Isoelectric Point (pI)

39.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 121 - 241 5.6e-40 Cyclin, N-terminal domain
Cyclin_C PF02984 244 - 366 4.5e-33 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000541)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47210 AT1G47210 AT1G47220 AT1G47230 AT1G47230 AT2G01310 AT5G43080 AT5G43080
fragaria_vesca FvH4_2g04770 FvH4_2g04770 FvH4_2g04770 FvH4_2g33510 FvH4_2g33510 FvH4_2g33510 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33530 FvH4_2g33530
malus_domestica MD05G1092000.v1.1 MD08G1091000.v1.1 MD08G1091200.v1.1 MD10G1100200.v1.1 MD10G1100700.v1.1 MD12G1105600.v1.1 MD15G1075100.v1.1 MD15G1075200.v1.1
prunus_persica Prupe.1G428000_v2.0.a1 Prupe.1G428100_v2.0.a1 Prupe.4G285800_v2.0.a1 Prupe.8G137700_v2.0.a1 Prupe.8G137700_v2.0.a1
pyrus_communis pycom05g09170 pycom08g07360 pycom08g07370 pycom15g07000 pycom15g07020
rosa_chinensis RchiOBHm_Chr3g0465621 RchiOBHm_Chr6g0254421 RchiOBHm_Chr6g0254451 RchiOBHm_Chr6g0308961 RchiOBHm_Chr6g0308971 RchiOBHm_Chr6g0308991 RchiOBHm_Chr7g0190851
rosa_laevigata RLG00000003915 RLG00000010598 RLG00000010599 RLG00000010600 RLG00000014913
rosa_multiflora Rmu_sc0009578.1_g000002 Rmu_sc0009578.1_g000003 Rmu_sc0029942.1_g000001 Rmu_sc0036151.1_g000001 Rmu_sc0036151.1_g000002 Rmu_sc0037719.1_g000001 Rmu_sc0042877.1_g000001 Rmu_ssc0000481.1_g000003
rosa_roxburghii Rroxscaffold_7G00159740 Rroxscaffold_7G00159750 Rroxscaffold_7G00159760 Rroxscaffold_7G00159770 Rroxscaffold_7G00210810
rosa_rugosa Rorug05G0552200 Rorug05G0552300 Rorug05G0552400
rosa_samantha Rh3CG081000 Rh6AG069300 Rh6AG481300 Rh6AG481600 Rh6BG062000 Rh6BG490400 Rh6BG490500 Rh6BG490600 Rh6CG062100 Rh6CG495700 Rh6CG495900 Rh6DG059100 Rh6DG481600 Rh6DG481700 Rh6DG481800
rosa_wichuraiana Rw6G006090 Rw6G041930 Rw6G041940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 571
AccII CGCG 3 cut(s) 43, 45, 111
AciI CCGC 4 cut(s) 35, 48, 65, 71
AcoI YGGCCR 1 cut(s) 78
AcsI RAATTY 3 cut(s) 405, 713, 860
AfaI GTAC 2 cut(s) 1013, 1058
AfiI CCNNNNNNNGG 1 cut(s) 571
AflII CTTAAG 1 cut(s) 748
AflIII ACRYGT 1 cut(s) 625
AgsI TTSAA 6 cut(s) 13, 585, 719, 942, 982, 1075
Alw21I GWGCWC 1 cut(s) 120
AlwNI CAGNNNCTG 1 cut(s) 94
AoxI GGCC 5 cut(s) 72, 78, 156, 248, 380
ApeKI GCWGC 4 cut(s) 50, 88, 91, 971
ApoI RAATTY 3 cut(s) 405, 713, 860
AseI ATTAAT 3 cut(s) 423, 615, 908
AspLEI GCGC 6 cut(s) 32, 45, 47, 111, 113, 187
AspS9I GGNCC 2 cut(s) 248, 741
AsuHPI GGTGA 2 cut(s) 121, 688
AvaII GGWCC 1 cut(s) 741
BbsI GAAGAC 1 cut(s) 237
Bbv12I GWGCWC 1 cut(s) 120
BbvI GCAGC 4 cut(s) 37, 100, 103, 983
BccI CCATC 1 cut(s) 679
BceAI ACGGC 2 cut(s) 98, 254
BciVI GTATCC 1 cut(s) 956
BclI TGATCA 2 cut(s) 546, 678
BfrI CTTAAG 1 cut(s) 748
BfuI GTATCC 1 cut(s) 956
BglII AGATCT 1 cut(s) 124
BisI GCNGC 6 cut(s) 48, 51, 72, 89, 92, 972
BlsI GCNGC 6 cut(s) 49, 52, 73, 90, 93, 973
Bme18I GGWCC 1 cut(s) 741
BmgT120I GGNCC 2 cut(s) 248, 741
BmiI GGNNCC 1 cut(s) 369
BmsI GCATC 1 cut(s) 406
BpiI GAAGAC 1 cut(s) 237
BpmI CTGGAG 2 cut(s) 548, 1086
BpuEI CTTGAG 1 cut(s) 756
BsaJI CCNNGG 4 cut(s) 75, 81, 236, 932
Bsc4I CCNNNNNNNGG 1 cut(s) 571
Bse1I ACTGG 1 cut(s) 964
Bse3DI GCAATG 4 cut(s) 383, 591, 944, 966
BseDI CCNNGG 4 cut(s) 75, 81, 236, 932
BseGI GGATG 3 cut(s) 421, 637, 769
BseLI CCNNNNNNNGG 1 cut(s) 571
BseMI GCAATG 4 cut(s) 383, 591, 944, 966
BseMII CTCAG 1 cut(s) 12
BseNI ACTGG 1 cut(s) 964
BsePI GCGCGC 2 cut(s) 43, 109
BseRI GAGGAG 4 cut(s) 73, 98, 623, 1041
BseXI GCAGC 4 cut(s) 37, 100, 103, 983
Bsh1236I CGCG 3 cut(s) 43, 45, 111
BshFI GGCC 5 cut(s) 74, 80, 158, 250, 382
BsiHKAI GWGCWC 1 cut(s) 120
BslI CCNNNNNNNGG 1 cut(s) 571
BsnI GGCC 5 cut(s) 74, 80, 158, 250, 382
Bsp1286I GDGCHC 1 cut(s) 120
Bsp143I GATC 4 cut(s) 124, 546, 678, 917
BspACI CCGC 4 cut(s) 35, 48, 65, 71
BspANI GGCC 5 cut(s) 74, 80, 158, 250, 382
BspCNI CTCAG 1 cut(s) 13
BspFNI CGCG 3 cut(s) 43, 45, 111
BspHI TCATGA 1 cut(s) 1003
BspLI GGNNCC 1 cut(s) 369
BspTI CTTAAG 1 cut(s) 748
BsrDI GCAATG 4 cut(s) 383, 591, 944, 966
BsrI ACTGG 1 cut(s) 964
BssECI CCNNGG 4 cut(s) 75, 81, 236, 932
BssHII GCGCGC 2 cut(s) 43, 109
BssMI GATC 4 cut(s) 124, 546, 678, 917
BssT1I CCWWGG 2 cut(s) 75, 932
Bst4CI ACNGT 2 cut(s) 665, 736
Bst6I CTCTTC 3 cut(s) 50, 504, 1018
BstAFI CTTAAG 1 cut(s) 748
BstC8I GCNNGC 3 cut(s) 45, 96, 111
BstDEI CTNAG 3 cut(s) 21, 102, 638
BstDSI CCRYGG 1 cut(s) 236
BstF5I GGATG 3 cut(s) 421, 637, 769
BstFNI CGCG 3 cut(s) 43, 45, 111
BstHHI GCGC 6 cut(s) 32, 45, 47, 111, 113, 187
BstKTI GATC 4 cut(s) 127, 549, 681, 920
BstMBI GATC 4 cut(s) 124, 546, 678, 917
BstMWI GCNNNNNNNGC 5 cut(s) 71, 77, 115, 247, 425
BstNSI RCATGY 1 cut(s) 629
BstUI CGCG 3 cut(s) 43, 45, 111
BstV1I GCAGC 4 cut(s) 37, 100, 103, 983
BstV2I GAAGAC 1 cut(s) 237
BstX2I RGATCY 1 cut(s) 124
BstYI RGATCY 1 cut(s) 124
BsuI GTATCC 1 cut(s) 956
BsuRI GGCC 5 cut(s) 74, 80, 158, 250, 382
BtgI CCRYGG 1 cut(s) 236
BtsCI GGATG 3 cut(s) 421, 637, 769
Cac8I GCNNGC 3 cut(s) 45, 96, 111
CaiI CAGNNNCTG 1 cut(s) 94
CciI TCATGA 1 cut(s) 1003
CfoI GCGC 6 cut(s) 32, 45, 47, 111, 113, 187
Cfr13I GGNCC 2 cut(s) 248, 741
Csp6I GTAC 2 cut(s) 1012, 1057
CviAII CATG 6 cut(s) 305, 397, 626, 646, 1004, 1140
CviQI GTAC 2 cut(s) 1012, 1057
DdeI CTNAG 3 cut(s) 21, 102, 638
DpnI GATC 4 cut(s) 126, 548, 680, 919
DpnII GATC 4 cut(s) 124, 546, 678, 917
EaeI YGGCCR 1 cut(s) 78
Eam1104I CTCTTC 3 cut(s) 50, 504, 1018
EarI CTCTTC 3 cut(s) 50, 504, 1018
Eco130I CCWWGG 2 cut(s) 75, 932
Eco32I GATATC 2 cut(s) 265, 697
Eco47I GGWCC 1 cut(s) 741
EcoRI GAATTC 1 cut(s) 405
EcoRV GATATC 2 cut(s) 265, 697
EcoT14I CCWWGG 2 cut(s) 75, 932
ErhI CCWWGG 2 cut(s) 75, 932
FaeI CATG 6 cut(s) 308, 400, 629, 649, 1007, 1143
FatI CATG 6 cut(s) 304, 396, 625, 645, 1003, 1139
FbaI TGATCA 2 cut(s) 546, 678
Fnu4HI GCNGC 6 cut(s) 48, 51, 72, 89, 92, 972
FokI GGATG 3 cut(s) 428, 644, 776
Fsp4HI GCNGC 6 cut(s) 48, 51, 72, 89, 92, 972
GlaI GCGC 6 cut(s) 31, 44, 46, 110, 112, 186
GluI GCNGC 6 cut(s) 48, 51, 72, 89, 92, 972
GsuI CTGGAG 2 cut(s) 548, 1086
HaeIII GGCC 5 cut(s) 74, 80, 158, 250, 382
HhaI GCGC 6 cut(s) 32, 45, 47, 111, 113, 187
Hin1II CATG 6 cut(s) 308, 400, 629, 649, 1007, 1143
Hin6I GCGC 6 cut(s) 30, 43, 45, 109, 111, 185
HinP1I GCGC 6 cut(s) 30, 43, 45, 109, 111, 185
HindIII AAGCTT 1 cut(s) 835
HinfI GANTC 4 cut(s) 179, 442, 727, 928
HphI GGTGA 2 cut(s) 121, 688
Hpy188I TCNGA 5 cut(s) 122, 178, 262, 411, 741
Hpy188III TCNNGA 4 cut(s) 491, 682, 1004, 1103
Hpy99I CGWCG 2 cut(s) 149, 152
HpyAV CCTTC 5 cut(s) 406, 754, 879, 1010, 1129
HpyCH4III ACNGT 2 cut(s) 665, 736
HpyCH4IV ACGT 2 cut(s) 144, 220
HpyCH4V TGCA 7 cut(s) 140, 470, 799, 827, 902, 949, 971
HpyF10VI GCNNNNNNNGC 5 cut(s) 71, 77, 115, 247, 425
HpyF3I CTNAG 3 cut(s) 21, 102, 638
HpySE526I ACGT 2 cut(s) 144, 220
Hsp92II CATG 6 cut(s) 308, 400, 629, 649, 1007, 1143
HspAI GCGC 6 cut(s) 30, 43, 45, 109, 111, 185
Ksp22I TGATCA 2 cut(s) 546, 678
Kzo9I GATC 4 cut(s) 124, 546, 678, 917
LmnI GCTCC 5 cut(s) 37, 85, 289, 567, 1120
Lsp1109I GCAGC 4 cut(s) 37, 100, 103, 983
LweI GCATC 1 cut(s) 406
MaeII ACGT 2 cut(s) 144, 220
MaeIII GTNAC 3 cut(s) 221, 641, 1035
MalI GATC 4 cut(s) 126, 548, 680, 919
MboI GATC 4 cut(s) 124, 546, 678, 917
MboII GAAGA 7 cut(s) 67, 242, 269, 479, 491, 1035, 1082
MflI RGATCY 1 cut(s) 124
MhlI GDGCHC 1 cut(s) 120
MluCI AATT 8 cut(s) 172, 351, 362, 405, 713, 778, 793, 860
MmeI TCCRAC 1 cut(s) 822
MseI TTAA 6 cut(s) 423, 480, 615, 749, 833, 908
MslI CAYNNNNRTG 1 cut(s) 630
MspA1I CMGCKG 3 cut(s) 50, 94, 974
MspCI CTTAAG 1 cut(s) 748
MvnI CGCG 3 cut(s) 43, 45, 111
MwoI GCNNNNNNNGC 5 cut(s) 71, 77, 115, 247, 425
NdeII GATC 4 cut(s) 124, 546, 678, 917
NlaIII CATG 6 cut(s) 308, 400, 629, 649, 1007, 1143
NlaIV GGNNCC 1 cut(s) 369
NmeAIII GCCGAG 1 cut(s) 106
NmuCI GTSAC 2 cut(s) 221, 641
NspI RCATGY 1 cut(s) 629
PagI TCATGA 1 cut(s) 1003
PauI GCGCGC 2 cut(s) 43, 109
PciI ACATGT 1 cut(s) 625
PfeI GAWTC 4 cut(s) 179, 442, 727, 928
PflMI CCANNNNNTGG 1 cut(s) 571
PkrI GCNGC 6 cut(s) 49, 52, 73, 90, 93, 973
PscI ACATGT 1 cut(s) 625
PshBI ATTAAT 3 cut(s) 423, 615, 908
PspN4I GGNNCC 1 cut(s) 369
PspPI GGNCC 2 cut(s) 248, 741
PstNI CAGNNNCTG 1 cut(s) 94
PsuI RGATCY 1 cut(s) 124
PteI GCGCGC 2 cut(s) 43, 109
PvuII CAGCTG 2 cut(s) 94, 974
RsaI GTAC 2 cut(s) 1013, 1058
RsaNI GTAC 2 cut(s) 1012, 1057
RseI CAYNNNNRTG 1 cut(s) 630
SaqAI TTAA 6 cut(s) 423, 480, 615, 749, 833, 908
SatI GCNGC 6 cut(s) 48, 51, 72, 89, 92, 972
Sau3AI GATC 4 cut(s) 124, 546, 678, 917
Sau96I GGNCC 2 cut(s) 248, 741
SduI GDGCHC 1 cut(s) 120
SfaNI GCATC 1 cut(s) 406
SinI GGWCC 1 cut(s) 741
SmiMI CAYNNNNRTG 1 cut(s) 630
SmlI CTYRAG 2 cut(s) 748, 771
SmoI CTYRAG 2 cut(s) 748, 771
Sse9I AATT 8 cut(s) 172, 351, 362, 405, 713, 778, 793, 860
SsiI CCGC 4 cut(s) 35, 48, 65, 71
SspI AATATT 1 cut(s) 530
StyI CCWWGG 2 cut(s) 75, 932
TaaI ACNGT 2 cut(s) 665, 736
TaiI ACGT 2 cut(s) 147, 223
TaqI TCGA 1 cut(s) 536
TasI AATT 8 cut(s) 172, 351, 362, 405, 713, 778, 793, 860
TatI WGTACW 2 cut(s) 1011, 1056
TauI GCSGC 2 cut(s) 50, 74
TfiI GAWTC 4 cut(s) 179, 442, 727, 928
Tru1I TTAA 6 cut(s) 423, 480, 615, 749, 833, 908
Tru9I TTAA 6 cut(s) 423, 480, 615, 749, 833, 908
TseFI GTSAC 2 cut(s) 221, 641
TseI GCWGC 4 cut(s) 50, 88, 91, 971
Tsp45I GTSAC 2 cut(s) 221, 641
TspDTI ATGAA 9 cut(s) 243, 489, 491, 554, 580, 648, 873, 941, 992
TspGWI ACGGA 1 cut(s) 217
Van91I CCANNNNNTGG 1 cut(s) 571
Vha464I CTTAAG 1 cut(s) 748
VpaK11BI GGWCC 1 cut(s) 741
VspI ATTAAT 3 cut(s) 423, 615, 908
XapI RAATTY 3 cut(s) 405, 713, 860
XceI RCATGY 1 cut(s) 629
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.