Rw6G041940

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000541
Physical Location & Seq
Reverse (-)
65563478 .. 65572698
9221 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G041940.1

Sequence Viewer

Length: 1077 bp
ATGGCTTCTTTCACTGTGGCCGAGAAATGCGCTCCGCTTACGCGCGCCGCGGCGAAGAGGAGGGCGGCGGCGGCCTTGGCCGAGGAGCAGCAGCTGGCGACTAAGAAGCGCGCCGTGCTCGGAGATCTCACCAACTTTGCAAACGTCGTCGTTTTGGCCTCAAAAAACCCCAAATCCGATTCTGCGCTAAAGAAACCCAAACGGAGAGTTGTGCTGGAACGTGACAATGATGACCCACGGCTTTGTGGGCCTTATGCTTCTGATATCTATGCCTATCTTCGCAGAATGGAGGTGGAACCAAAAAGGAGGCCATTGCCTGATTACATGGAGAGAATTCAGAAGGATGCTATTAATGCTAATATGAGAGGGATTCTTGTGGATTGGTTGGTGGAGGTTGCAGATGAATTTAAACTTCTTCCAGACACTCTCCATCTATCTATTTCCTATGTTGATAAATATTTGTCGATGAATGTGATCAATAGGCAGAATCTCCAGCTATTGGGAGTTGCTTCAATGTTCATTGCCTCAAAGTATGAGGAGATTAATCCTCCACATGTGGATGACCTTATTGACATGACAGAAAATACATGCAGTAAAGCAGAGGTGATCAAGATGGAGGCTGATATACTACTATCTCTGAAATTTGAAATGGGAAATCCCAATGTTCGTACATTCTTGAGAAAATTCATTGATCTTGCCCAAGAGAGTTACTACAAAAATCCTAATTTGCAGTTTGAGTCTTTGATTTACTACCTCACAGATCTAAGTTTGGTGGATTACAAACTTGTGAAGTTCTTGCCTTCTATTATAGCAGCATCGGCTGTATTTCTAGCAAGAGTTATTATTACTAGATCAAAAATGAATCCTTGGTGTCCAGCACTGCAAGAATATACTGGTTATAAGGCAGTGGATTTGAGAGAATGTGTTCTTATTATTCATGACTTGTACTTGGGTAGACGTGGTGGATCTTTGGTAGCTGTACGAGATAAATACAAACAAATTAAGTTAAAATGTGTGGCAAAAATGCATTGCCCTTCACAGTTACCACATTCCTTGTTTGAAGCTGTGAAAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

358

Amino Acids

40.68

Weight (kDa)

9.1

Isoelectric Point (pI)

43.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 88 - 217 6.7e-42 Cyclin, N-terminal domain
Cyclin_C PF02984 220 - 344 1.8e-30 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000541)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47210 AT1G47210 AT1G47220 AT1G47230 AT1G47230 AT2G01310 AT5G43080 AT5G43080
fragaria_vesca FvH4_2g04770 FvH4_2g04770 FvH4_2g04770 FvH4_2g33510 FvH4_2g33510 FvH4_2g33510 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33530 FvH4_2g33530
malus_domestica MD05G1092000.v1.1 MD08G1091000.v1.1 MD08G1091200.v1.1 MD10G1100200.v1.1 MD10G1100700.v1.1 MD12G1105600.v1.1 MD15G1075100.v1.1 MD15G1075200.v1.1
prunus_persica Prupe.1G428000_v2.0.a1 Prupe.1G428100_v2.0.a1 Prupe.4G285800_v2.0.a1 Prupe.8G137700_v2.0.a1 Prupe.8G137700_v2.0.a1
pyrus_communis pycom05g09170 pycom08g07360 pycom08g07370 pycom15g07000 pycom15g07020
rosa_chinensis RchiOBHm_Chr3g0465621 RchiOBHm_Chr6g0254421 RchiOBHm_Chr6g0254451 RchiOBHm_Chr6g0308961 RchiOBHm_Chr6g0308971 RchiOBHm_Chr6g0308991 RchiOBHm_Chr7g0190851
rosa_laevigata RLG00000003915 RLG00000010598 RLG00000010599 RLG00000010600 RLG00000014913
rosa_multiflora Rmu_sc0009578.1_g000002 Rmu_sc0009578.1_g000003 Rmu_sc0029942.1_g000001 Rmu_sc0036151.1_g000001 Rmu_sc0036151.1_g000002 Rmu_sc0037719.1_g000001 Rmu_sc0042877.1_g000001 Rmu_ssc0000481.1_g000003
rosa_roxburghii Rroxscaffold_7G00159740 Rroxscaffold_7G00159750 Rroxscaffold_7G00159760 Rroxscaffold_7G00159770 Rroxscaffold_7G00210810
rosa_rugosa Rorug05G0552200 Rorug05G0552300 Rorug05G0552400
rosa_samantha Rh3CG081000 Rh6AG069300 Rh6AG481300 Rh6AG481600 Rh6BG062000 Rh6BG490400 Rh6BG490500 Rh6BG490600 Rh6CG062100 Rh6CG495700 Rh6CG495900 Rh6DG059100 Rh6DG481600 Rh6DG481700 Rh6DG481800
rosa_wichuraiana Rw6G006090 Rw6G041930 Rw6G041940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 900
AccB7I CCANNNNNTGG 1 cut(s) 499
AccI GTMKAC 1 cut(s) 955
AccII CGCG 4 cut(s) 43, 45, 50, 111
AciI CCGC 6 cut(s) 35, 48, 50, 65, 68, 71
AclWI GGATC 1 cut(s) 973
AcoI YGGCCR 2 cut(s) 18, 78
AcsI RAATTY 4 cut(s) 333, 404, 641, 683
AfaI GTAC 3 cut(s) 670, 947, 981
AfiI CCNNNNNNNGG 1 cut(s) 499
AflIII ACRYGT 1 cut(s) 553
AgsI TTSAA 3 cut(s) 513, 647, 1061
AjiI CACGTC 1 cut(s) 959
AluBI AGCT 4 cut(s) 94, 496, 977, 1064
AluI AGCT 4 cut(s) 94, 496, 977, 1064
Alw21I GWGCWC 1 cut(s) 120
AlwI GGATC 1 cut(s) 973
AlwNI CAGNNNCTG 1 cut(s) 94
AoxI GGCC 6 cut(s) 18, 72, 78, 156, 248, 308
ApeKI GCWGC 3 cut(s) 88, 91, 812
ApoI RAATTY 4 cut(s) 333, 404, 641, 683
AseI ATTAAT 2 cut(s) 351, 543
Asp700I GAANNNNTTC 1 cut(s) 924
AspLEI GCGC 6 cut(s) 32, 45, 47, 111, 113, 187
AspS9I GGNCC 1 cut(s) 248
AsuHPI GGTGA 2 cut(s) 121, 616
Bbv12I GWGCWC 1 cut(s) 120
BbvI GCAGC 3 cut(s) 100, 103, 824
BccI CCATC 2 cut(s) 438, 607
BceAI ACGGC 2 cut(s) 98, 254
BclI TGATCA 2 cut(s) 474, 606
BfaI CTAG 2 cut(s) 830, 849
BglII AGATCT 2 cut(s) 124, 760
BisI GCNGC 8 cut(s) 48, 51, 66, 69, 72, 89, 92, 813
BlsI GCNGC 8 cut(s) 49, 52, 67, 70, 73, 90, 93, 814
BmgBI CACGTC 1 cut(s) 959
BmgT120I GGNCC 1 cut(s) 248
BmiI GGNNCC 1 cut(s) 297
BmsI GCATC 2 cut(s) 334, 824
BpmI CTGGAG 1 cut(s) 476
BpuEI CTTGAG 1 cut(s) 697
BsaJI CCNNGG 5 cut(s) 48, 75, 81, 236, 866
Bsc4I CCNNNNNNNGG 1 cut(s) 499
Bse1I ACTGG 1 cut(s) 898
Bse3DI GCAATG 3 cut(s) 311, 519, 1027
BseDI CCNNGG 5 cut(s) 48, 75, 81, 236, 866
BseGI GGATG 2 cut(s) 349, 565
BseLI CCNNNNNNNGG 1 cut(s) 499
BseMI GCAATG 3 cut(s) 311, 519, 1027
BseNI ACTGG 1 cut(s) 898
BsePI GCGCGC 2 cut(s) 43, 109
BseRI GAGGAG 3 cut(s) 73, 98, 551
BseXI GCAGC 3 cut(s) 100, 103, 824
Bsh1236I CGCG 4 cut(s) 43, 45, 50, 111
BshFI GGCC 6 cut(s) 20, 74, 80, 158, 250, 310
BsiHKAI GWGCWC 1 cut(s) 120
BslI CCNNNNNNNGG 1 cut(s) 499
BsnI GGCC 6 cut(s) 20, 74, 80, 158, 250, 310
Bsp1286I GDGCHC 1 cut(s) 120
Bsp143I GATC 7 cut(s) 124, 474, 606, 691, 760, 851, 965
BspACI CCGC 6 cut(s) 35, 48, 50, 65, 68, 71
BspANI GGCC 6 cut(s) 20, 74, 80, 158, 250, 310
BspFNI CGCG 4 cut(s) 43, 45, 50, 111
BspHI TCATGA 1 cut(s) 937
BspLI GGNNCC 1 cut(s) 297
BspPI GGATC 1 cut(s) 973
BsrDI GCAATG 3 cut(s) 311, 519, 1027
BsrI ACTGG 1 cut(s) 898
BssECI CCNNGG 5 cut(s) 48, 75, 81, 236, 866
BssHII GCGCGC 2 cut(s) 43, 109
BssMI GATC 7 cut(s) 124, 474, 606, 691, 760, 851, 965
BssT1I CCWWGG 2 cut(s) 75, 866
Bst4CI ACNGT 2 cut(s) 16, 1041
Bst6I CTCTTC 1 cut(s) 50
BstC8I GCNNGC 3 cut(s) 45, 96, 111
BstDEI CTNAG 2 cut(s) 102, 764
BstDSI CCRYGG 2 cut(s) 48, 236
BstF5I GGATG 2 cut(s) 349, 565
BstFNI CGCG 4 cut(s) 43, 45, 50, 111
BstHHI GCGC 6 cut(s) 32, 45, 47, 111, 113, 187
BstKTI GATC 7 cut(s) 127, 477, 609, 694, 763, 854, 968
BstMBI GATC 7 cut(s) 124, 474, 606, 691, 760, 851, 965
BstMWI GCNNNNNNNGC 7 cut(s) 71, 77, 115, 247, 353, 818, 1070
BstNSI RCATGY 2 cut(s) 557, 591
BstUI CGCG 4 cut(s) 43, 45, 50, 111
BstV1I GCAGC 3 cut(s) 100, 103, 824
BstX2I RGATCY 3 cut(s) 124, 760, 965
BstYI RGATCY 3 cut(s) 124, 760, 965
BsuRI GGCC 6 cut(s) 20, 74, 80, 158, 250, 310
BtgI CCRYGG 2 cut(s) 48, 236
BtrI CACGTC 1 cut(s) 959
BtsCI GGATG 2 cut(s) 349, 565
BtsI GCAGTG 2 cut(s) 878, 912
BtsIMutI CAGTG 3 cut(s) 12, 878, 912
Cac8I GCNNGC 3 cut(s) 45, 96, 111
CaiI CAGNNNCTG 1 cut(s) 94
CciI TCATGA 1 cut(s) 937
CfoI GCGC 6 cut(s) 32, 45, 47, 111, 113, 187
Cfr13I GGNCC 1 cut(s) 248
Cfr42I CCGCGG 1 cut(s) 51
Csp6I GTAC 3 cut(s) 669, 946, 980
CspCI CAANNNNNGTGG 2 cut(s) 1035, 1070
CviAII CATG 6 cut(s) 325, 554, 574, 588, 938, 1074
CviQI GTAC 3 cut(s) 669, 946, 980
DdeI CTNAG 2 cut(s) 102, 764
DpnI GATC 7 cut(s) 126, 476, 608, 693, 762, 853, 967
DpnII GATC 7 cut(s) 124, 474, 606, 691, 760, 851, 965
DraI TTTAAA 1 cut(s) 409
EaeI YGGCCR 2 cut(s) 18, 78
Eam1104I CTCTTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 50
Eco130I CCWWGG 2 cut(s) 75, 866
Eco32I GATATC 1 cut(s) 265
EcoRI GAATTC 1 cut(s) 333
EcoRV GATATC 1 cut(s) 265
EcoT14I CCWWGG 2 cut(s) 75, 866
EcoT22I ATGCAT 1 cut(s) 1029
ErhI CCWWGG 2 cut(s) 75, 866
FaeI CATG 6 cut(s) 328, 557, 577, 591, 941, 1077
FatI CATG 6 cut(s) 324, 553, 573, 587, 937, 1073
FbaI TGATCA 2 cut(s) 474, 606
FblI GTMKAC 1 cut(s) 955
Fnu4HI GCNGC 8 cut(s) 48, 51, 66, 69, 72, 89, 92, 813
FokI GGATG 2 cut(s) 356, 572
Fsp4HI GCNGC 8 cut(s) 48, 51, 66, 69, 72, 89, 92, 813
FspBI CTAG 2 cut(s) 830, 849
GlaI GCGC 6 cut(s) 31, 44, 46, 110, 112, 186
GluI GCNGC 8 cut(s) 48, 51, 66, 69, 72, 89, 92, 813
GsuI CTGGAG 1 cut(s) 476
HaeIII GGCC 6 cut(s) 20, 74, 80, 158, 250, 310
HhaI GCGC 6 cut(s) 32, 45, 47, 111, 113, 187
Hin1II CATG 6 cut(s) 328, 557, 577, 591, 941, 1077
Hin6I GCGC 6 cut(s) 30, 43, 45, 109, 111, 185
HinP1I GCGC 6 cut(s) 30, 43, 45, 109, 111, 185
HinfI GANTC 5 cut(s) 179, 370, 487, 737, 862
HphI GGTGA 2 cut(s) 121, 616
Hpy166II GTNNAC 1 cut(s) 956
Hpy188I TCNGA 5 cut(s) 122, 178, 262, 339, 639
Hpy188III TCNNGA 4 cut(s) 419, 610, 676, 938
Hpy8I GTNNAC 1 cut(s) 956
Hpy99I CGWCG 2 cut(s) 149, 152
HpyAV CCTTC 3 cut(s) 334, 810, 1044
HpyCH4III ACNGT 2 cut(s) 16, 1041
HpyCH4IV ACGT 3 cut(s) 144, 220, 958
HpyCH4V TGCA 6 cut(s) 140, 398, 591, 730, 883, 1027
HpyF10VI GCNNNNNNNGC 7 cut(s) 71, 77, 115, 247, 353, 818, 1070
HpyF3I CTNAG 2 cut(s) 102, 764
HpySE526I ACGT 3 cut(s) 144, 220, 958
Hsp92II CATG 6 cut(s) 328, 557, 577, 591, 941, 1077
HspAI GCGC 6 cut(s) 30, 43, 45, 109, 111, 185
Ksp22I TGATCA 2 cut(s) 474, 606
KspI CCGCGG 1 cut(s) 51
Kzo9I GATC 7 cut(s) 124, 474, 606, 691, 760, 851, 965
LmnI GCTCC 2 cut(s) 37, 85
LpnPI CCDG 7 cut(s) 80, 200, 330, 432, 506, 879, 888
Lsp1109I GCAGC 3 cut(s) 100, 103, 824
LweI GCATC 2 cut(s) 334, 824
MaeI CTAG 2 cut(s) 830, 849
MaeII ACGT 3 cut(s) 144, 220, 958
MaeIII GTNAC 3 cut(s) 221, 707, 1041
MalI GATC 7 cut(s) 126, 476, 608, 693, 762, 853, 967
MboI GATC 7 cut(s) 124, 474, 606, 691, 760, 851, 965
MboII GAAGA 3 cut(s) 67, 269, 407
MflI RGATCY 3 cut(s) 124, 760, 965
MhlI GDGCHC 1 cut(s) 120
MluCI AATT 6 cut(s) 333, 404, 641, 683, 724, 999
MlyI GAGTC 1 cut(s) 746
Mph1103I ATGCAT 1 cut(s) 1029
MroXI GAANNNNTTC 1 cut(s) 924
MseI TTAA 5 cut(s) 351, 408, 543, 1002, 1007
MslI CAYNNNNRTG 1 cut(s) 558
MspA1I CMGCKG 2 cut(s) 50, 94
MvnI CGCG 4 cut(s) 43, 45, 50, 111
MwoI GCNNNNNNNGC 7 cut(s) 71, 77, 115, 247, 353, 818, 1070
NdeII GATC 7 cut(s) 124, 474, 606, 691, 760, 851, 965
NlaIII CATG 6 cut(s) 328, 557, 577, 591, 941, 1077
NlaIV GGNNCC 1 cut(s) 297
NmeAIII GCCGAG 2 cut(s) 46, 106
NmuCI GTSAC 1 cut(s) 221
NsiI ATGCAT 1 cut(s) 1029
NspI RCATGY 2 cut(s) 557, 591
PagI TCATGA 1 cut(s) 937
PauI GCGCGC 2 cut(s) 43, 109
PciI ACATGT 1 cut(s) 553
PdmI GAANNNNTTC 1 cut(s) 924
PfeI GAWTC 4 cut(s) 179, 370, 487, 862
PflMI CCANNNNNTGG 1 cut(s) 499
PkrI GCNGC 8 cut(s) 49, 52, 67, 70, 73, 90, 93, 814
PleI GAGTC 1 cut(s) 745
PpsI GAGTC 1 cut(s) 745
PscI ACATGT 1 cut(s) 553
PshBI ATTAAT 2 cut(s) 351, 543
PsiI TTATAA 1 cut(s) 900
PspN4I GGNNCC 1 cut(s) 297
PspPI GGNCC 1 cut(s) 248
PstNI CAGNNNCTG 1 cut(s) 94
PsuI RGATCY 3 cut(s) 124, 760, 965
PteI GCGCGC 2 cut(s) 43, 109
PvuII CAGCTG 1 cut(s) 94
RsaI GTAC 3 cut(s) 670, 947, 981
RsaNI GTAC 3 cut(s) 669, 946, 980
RseI CAYNNNNRTG 1 cut(s) 558
SacII CCGCGG 1 cut(s) 51
SaqAI TTAA 5 cut(s) 351, 408, 543, 1002, 1007
SatI GCNGC 8 cut(s) 48, 51, 66, 69, 72, 89, 92, 813
Sau3AI GATC 7 cut(s) 124, 474, 606, 691, 760, 851, 965
Sau96I GGNCC 1 cut(s) 248
SchI GAGTC 1 cut(s) 746
SduI GDGCHC 1 cut(s) 120
SfaNI GCATC 2 cut(s) 334, 824
Sfr303I CCGCGG 1 cut(s) 51
SgrBI CCGCGG 1 cut(s) 51
SmiMI CAYNNNNRTG 1 cut(s) 558
SmlI CTYRAG 1 cut(s) 676
SmoI CTYRAG 1 cut(s) 676
Sse9I AATT 6 cut(s) 333, 404, 641, 683, 724, 999
SsiI CCGC 6 cut(s) 35, 48, 50, 65, 68, 71
SspI AATATT 1 cut(s) 458
SspMI CTAG 2 cut(s) 830, 849
StyI CCWWGG 2 cut(s) 75, 866
TaaI ACNGT 2 cut(s) 16, 1041
TaiI ACGT 3 cut(s) 147, 223, 961
TaqI TCGA 1 cut(s) 464
TasI AATT 6 cut(s) 333, 404, 641, 683, 724, 999
TatI WGTACW 1 cut(s) 945
TauI GCSGC 5 cut(s) 50, 53, 68, 71, 74
TfiI GAWTC 4 cut(s) 179, 370, 487, 862
Tru1I TTAA 5 cut(s) 351, 408, 543, 1002, 1007
Tru9I TTAA 5 cut(s) 351, 408, 543, 1002, 1007
TscAI CASTG 3 cut(s) 19, 885, 912
TseFI GTSAC 1 cut(s) 221
TseI GCWGC 3 cut(s) 88, 91, 812
Tsp45I GTSAC 1 cut(s) 221
TspDTI ATGAA 6 cut(s) 417, 482, 508, 676, 875, 926
TspGWI ACGGA 1 cut(s) 217
TspRI CASTG 3 cut(s) 19, 885, 912
Van91I CCANNNNNTGG 1 cut(s) 499
VspI ATTAAT 2 cut(s) 351, 543
XapI RAATTY 4 cut(s) 333, 404, 641, 683
XceI RCATGY 2 cut(s) 557, 591
XmiI GTMKAC 1 cut(s) 955
XmnI GAANNNNTTC 1 cut(s) 924
XspI CTAG 2 cut(s) 830, 849
Zsp2I ATGCAT 1 cut(s) 1029
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.