RchiOBHm_Chr6g0254421

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000541
Physical Location & Seq
Forward (+)
9461445 .. 9465381
3937 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22822

Sequence Viewer

Length: 1005 bp
ATGTGCGACGAAGGAAACAGCGTCTACACCACGCGCTCGACGAAGAAGCGAGCCTCGGCGGCGGAGGCCCTGAAAGTTCCGGCGTCCAAGAAGCAGCGATCCGTACTGGGAGAGATCACCAACTCGCCGGATCTCGTTTCGGTTCCGAAATCGGCACCGAAGAAACCGAAAATTGAGTCGCAGAAGAAGGAAGAGGAGGAGGGACTCGAGACGGAGATTGGTGTGGGCTCGATTGATCCGGTCAAATGTGCTTACTCGCCTTCTATGTATAAGCATCTTCATATATTGGAGGTGGAGGTGAAGAATAGACCATTATGTGGTTACATGGAGAAGGTGCAGAATTGTATTTCAGAACACATGCGAGAAGTCCTGGTGGATTGGTTGGTGGAGGTTGCGGAGGAATACAAGTTTGTTTCAGACACCCTTTATCTTACCGTATCATATATTGACAGATACCTTTCTTCACACGTTATCAGCAAGAACAAGCTACAGCTTCTTGGTGTTGCGTGCATGTTTATTGCCTCGAAGTACGAAGAGATTTGTCCTGCACGTATTGAAGAGTTCTGCTATATAACAGATAATTCCTACATGATAGAAGAGGTGTTGGAAATGGAGAAAGATGTACTCAAATTCTTGAACTTTGAGATCTATACTCCCACAACAAGGAGTTTTCTCAGAATCTTCGCAAGAGCTGCTCAAGAGAATTCCAAATCTTCGGATCTGCAGTTTGAATTCTTGGGTGGTTATCTTGCGGAACTAAGTTTGCTTGACTACTGCTGTGTTCGATTCCTACCATCAGTTATTGCCGCATCAGTGGTTTTTCTTACAAGGTTCACAATCCAGCCTGAGGTTCATCCCTGGAGCTGGGACTTGCAGTGCTATTCTGGTTATAAACCATCTGACTTACAAGATTGTGTCGTCGCCCTTCGTGACTTGCAGCTGAATAAAAGAGGAAGCAATTTGCGAGCAGTTGGAGATAAATATATGCAAGCAATGGTAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

334

Amino Acids

38.09

Weight (kDa)

5.59

Isoelectric Point (pI)

53.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 95 - 216 3.2e-44 Cyclin, N-terminal domain
Cyclin_C PF02984 219 - 331 4e-27 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000541)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47210 AT1G47210 AT1G47220 AT1G47230 AT1G47230 AT2G01310 AT5G43080 AT5G43080
fragaria_vesca FvH4_2g04770 FvH4_2g04770 FvH4_2g04770 FvH4_2g33510 FvH4_2g33510 FvH4_2g33510 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33530 FvH4_2g33530
malus_domestica MD05G1092000.v1.1 MD08G1091000.v1.1 MD08G1091200.v1.1 MD10G1100200.v1.1 MD10G1100700.v1.1 MD12G1105600.v1.1 MD15G1075100.v1.1 MD15G1075200.v1.1
prunus_persica Prupe.1G428000_v2.0.a1 Prupe.1G428100_v2.0.a1 Prupe.4G285800_v2.0.a1 Prupe.8G137700_v2.0.a1 Prupe.8G137700_v2.0.a1
pyrus_communis pycom05g09170 pycom08g07360 pycom08g07370 pycom15g07000 pycom15g07020
rosa_chinensis RchiOBHm_Chr3g0465621 RchiOBHm_Chr6g0254421 RchiOBHm_Chr6g0254451 RchiOBHm_Chr6g0308961 RchiOBHm_Chr6g0308971 RchiOBHm_Chr6g0308991 RchiOBHm_Chr7g0190851
rosa_laevigata RLG00000003915 RLG00000010598 RLG00000010599 RLG00000010600 RLG00000014913
rosa_multiflora Rmu_sc0009578.1_g000002 Rmu_sc0009578.1_g000003 Rmu_sc0029942.1_g000001 Rmu_sc0036151.1_g000001 Rmu_sc0036151.1_g000002 Rmu_sc0037719.1_g000001 Rmu_sc0042877.1_g000001 Rmu_ssc0000481.1_g000003
rosa_roxburghii Rroxscaffold_7G00159740 Rroxscaffold_7G00159750 Rroxscaffold_7G00159760 Rroxscaffold_7G00159770 Rroxscaffold_7G00210810
rosa_rugosa Rorug05G0552200 Rorug05G0552300 Rorug05G0552400
rosa_samantha Rh3CG081000 Rh6AG069300 Rh6AG481300 Rh6AG481600 Rh6BG062000 Rh6BG490400 Rh6BG490500 Rh6BG490600 Rh6CG062100 Rh6CG495700 Rh6CG495900 Rh6DG059100 Rh6DG481600 Rh6DG481700 Rh6DG481800
rosa_wichuraiana Rw6G006090 Rw6G041930 Rw6G041940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 891
AccB1I GGYRCC 1 cut(s) 154
AccB7I CCANNNNNTGG 1 cut(s) 317
AccI GTMKAC 1 cut(s) 24
AccII CGCG 1 cut(s) 34
AciI CCGC 5 cut(s) 59, 62, 395, 752, 807
AclWI GGATC 4 cut(s) 93, 138, 230, 726
AcsI RAATTY 3 cut(s) 629, 703, 731
AcyI GRCGYC 1 cut(s) 83
AfaI GTAC 3 cut(s) 105, 530, 624
AfiI CCNNNNNNNGG 4 cut(s) 317, 663, 847, 864
AflIII ACRYGT 1 cut(s) 466
AgsI TTSAA 3 cut(s) 557, 637, 731
AjnI CCWGG 2 cut(s) 369, 857
AluBI AGCT 5 cut(s) 487, 493, 692, 864, 940
AluI AGCT 5 cut(s) 487, 493, 692, 864, 940
Alw26I GTCTC 1 cut(s) 203
AlwI GGATC 4 cut(s) 93, 138, 230, 726
Ama87I CYCGRG 1 cut(s) 206
AoxI GGCC 1 cut(s) 66
ApeKI GCWGC 3 cut(s) 94, 692, 937
ApoI RAATTY 3 cut(s) 629, 703, 731
ArsI GACNNNNNNTTYG 2 cut(s) 161, 193
AspLEI GCGC 1 cut(s) 36
AspS9I GGNCC 1 cut(s) 67
AsuHPI GGTGA 2 cut(s) 109, 310
AvaI CYCGRG 1 cut(s) 206
AxyI CCTNAGG 1 cut(s) 846
BanI GGYRCC 1 cut(s) 154
BanII GRGCYC 1 cut(s) 230
BbvI GCAGC 3 cut(s) 106, 679, 949
BccI CCATC 2 cut(s) 802, 904
BciT130I CCWGG 2 cut(s) 371, 859
BcoDI GTCTC 1 cut(s) 203
BfmI CTRYAG 2 cut(s) 488, 722
BglI GCCNNNNNGGC 1 cut(s) 59
BglII AGATCT 1 cut(s) 645
BisI GCNGC 5 cut(s) 60, 95, 693, 807, 938
BlsI GCNGC 5 cut(s) 61, 96, 694, 808, 939
Bme1390I CCNGG 2 cut(s) 371, 859
BmeT110I CYCGRG 1 cut(s) 206
BmgT120I GGNCC 1 cut(s) 67
BmiI GGNNCC 2 cut(s) 144, 156
BmrFI CCNGG 2 cut(s) 371, 859
BmrI ACTGGG 1 cut(s) 116
BmsI GCATC 2 cut(s) 283, 818
BmuI ACTGGG 1 cut(s) 116
BpmI CTGGAG 1 cut(s) 880
BpuEI CTTGAG 1 cut(s) 681
BsaAI YACGTR 1 cut(s) 551
BsaHI GRCGYC 1 cut(s) 83
BsaJI CCNNGG 2 cut(s) 54, 857
BsaWI WCCGGW 1 cut(s) 238
Bsc4I CCNNNNNNNGG 4 cut(s) 317, 663, 847, 864
Bse1I ACTGG 1 cut(s) 111
Bse21I CCTNAGG 1 cut(s) 846
Bse3DI GCAATG 1 cut(s) 999
BseBI CCWGG 2 cut(s) 371, 859
BseDI CCNNGG 2 cut(s) 54, 857
BseGI GGATG 1 cut(s) 853
BseLI CCNNNNNNNGG 4 cut(s) 317, 663, 847, 864
BseMI GCAATG 1 cut(s) 999
BseMII CTCAG 2 cut(s) 688, 837
BseNI ACTGG 1 cut(s) 111
BseRI GAGGAG 2 cut(s) 209, 212
BseXI GCAGC 3 cut(s) 106, 679, 949
BseYI CCCAGC 1 cut(s) 864
BsgI GTGCAG 2 cut(s) 356, 531
Bsh1236I CGCG 1 cut(s) 34
BshFI GGCC 1 cut(s) 68
BshNI GGYRCC 1 cut(s) 154
BsiHKCI CYCGRG 1 cut(s) 206
BsiSI CCGG 3 cut(s) 80, 128, 239
BslFI GGGAC 2 cut(s) 216, 881
BslI CCNNNNNNNGG 4 cut(s) 317, 663, 847, 864
BsmAI GTCTC 1 cut(s) 203
BsmBI CGTCTC 1 cut(s) 203
BsmFI GGGAC 2 cut(s) 216, 881
BsnI GGCC 1 cut(s) 68
BsoBI CYCGRG 1 cut(s) 206
Bsp1286I GDGCHC 1 cut(s) 230
Bsp143I GATC 6 cut(s) 98, 114, 130, 235, 645, 718
BspACI CCGC 5 cut(s) 59, 62, 395, 752, 807
BspANI GGCC 1 cut(s) 68
BspCNI CTCAG 2 cut(s) 687, 838
BspFNI CGCG 1 cut(s) 34
BspLI GGNNCC 2 cut(s) 144, 156
BspMAI CTGCAG 1 cut(s) 726
BspPI GGATC 4 cut(s) 93, 138, 230, 726
BspT107I GGYRCC 1 cut(s) 154
BsrDI GCAATG 1 cut(s) 999
BsrI ACTGG 1 cut(s) 111
BssECI CCNNGG 2 cut(s) 54, 857
BssMI GATC 6 cut(s) 98, 114, 130, 235, 645, 718
BssNI GRCGYC 1 cut(s) 83
Bst2UI CCWGG 2 cut(s) 371, 859
Bst4CI ACNGT 1 cut(s) 436
Bst6I CTCTTC 4 cut(s) 186, 528, 552, 591
BstACI GRCGYC 1 cut(s) 83
BstAPI GCANNNNNTGC 1 cut(s) 692
BstBAI YACGTR 1 cut(s) 551
BstC8I GCNNGC 4 cut(s) 51, 508, 966, 990
BstDEI CTNAG 3 cut(s) 674, 758, 846
BstF5I GGATG 1 cut(s) 853
BstFNI CGCG 1 cut(s) 34
BstHHI GCGC 1 cut(s) 36
BstKTI GATC 6 cut(s) 101, 117, 133, 238, 648, 721
BstMAI GTCTC 1 cut(s) 203
BstMBI GATC 6 cut(s) 98, 114, 130, 235, 645, 718
BstMWI GCNNNNNNNGC 3 cut(s) 59, 65, 692
BstNI CCWGG 2 cut(s) 371, 859
BstNSI RCATGY 2 cut(s) 361, 514
BstSCI CCNGG 2 cut(s) 369, 857
BstSFI CTRYAG 2 cut(s) 488, 722
BstUI CGCG 1 cut(s) 34
BstV1I GCAGC 3 cut(s) 106, 679, 949
BstX2I RGATCY 3 cut(s) 130, 645, 718
BstYI RGATCY 3 cut(s) 130, 645, 718
Bsu36I CCTNAGG 1 cut(s) 846
BsuRI GGCC 1 cut(s) 68
BtsCI GGATG 1 cut(s) 853
BtsI GCAGTG 1 cut(s) 881
BtsIMutI CAGTG 2 cut(s) 819, 881
Cac8I GCNNGC 4 cut(s) 51, 508, 966, 990
CfoI GCGC 1 cut(s) 36
Cfr13I GGNCC 1 cut(s) 67
CseI GACGC 2 cut(s) 10, 72
Csp6I GTAC 3 cut(s) 104, 529, 623
CviAII CATG 4 cut(s) 325, 358, 511, 589
CviJI RGCY 9 cut(s) 53, 68, 228, 487, 493, 692, 844, 864, 940
CviKI_1 RGCY 9 cut(s) 53, 68, 228, 487, 493, 692, 844, 864, 940
CviQI GTAC 3 cut(s) 104, 529, 623
DdeI CTNAG 3 cut(s) 674, 758, 846
DpnI GATC 6 cut(s) 100, 116, 132, 237, 647, 720
DpnII GATC 6 cut(s) 98, 114, 130, 235, 645, 718
Eam1104I CTCTTC 4 cut(s) 186, 528, 552, 591
EarI CTCTTC 4 cut(s) 186, 528, 552, 591
EciI GGCGGA 1 cut(s) 77
Eco24I GRGCYC 1 cut(s) 230
Eco81I CCTNAGG 1 cut(s) 846
Eco88I CYCGRG 1 cut(s) 206
EcoO109I RGGNCCY 1 cut(s) 67
EcoRI GAATTC 2 cut(s) 703, 731
EcoRII CCWGG 2 cut(s) 369, 857
EcoT38I GRGCYC 1 cut(s) 230
Esp3I CGTCTC 1 cut(s) 203
FaeI CATG 4 cut(s) 328, 361, 514, 592
FaqI GGGAC 2 cut(s) 216, 881
FatI CATG 4 cut(s) 324, 357, 510, 588
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 5 cut(s) 60, 95, 693, 807, 938
FokI GGATG 1 cut(s) 840
FriOI GRGCYC 1 cut(s) 230
Fsp4HI GCNGC 5 cut(s) 60, 95, 693, 807, 938
GlaI GCGC 1 cut(s) 35
GluI GCNGC 5 cut(s) 60, 95, 693, 807, 938
GsaI CCCAGC 1 cut(s) 868
GsuI CTGGAG 1 cut(s) 880
HaeIII GGCC 1 cut(s) 68
HapII CCGG 3 cut(s) 80, 128, 239
HgaI GACGC 2 cut(s) 10, 72
HhaI GCGC 1 cut(s) 36
Hin1I GRCGYC 1 cut(s) 83
Hin1II CATG 4 cut(s) 328, 361, 514, 592
Hin6I GCGC 1 cut(s) 34
HinP1I GCGC 1 cut(s) 34
HinfI GANTC 4 cut(s) 176, 204, 678, 786
HpaII CCGG 3 cut(s) 80, 128, 239
HphI GGTGA 2 cut(s) 109, 310
Hpy166II GTNNAC 2 cut(s) 25, 834
Hpy188I TCNGA 6 cut(s) 147, 352, 418, 677, 718, 901
Hpy188III TCNNGA 4 cut(s) 208, 634, 698, 929
Hpy8I GTNNAC 2 cut(s) 25, 834
Hpy99I CGWCG 3 cut(s) 11, 43, 923
HpyAV CCTTC 5 cut(s) 5, 181, 270, 325, 935
HpyCH4III ACNGT 1 cut(s) 436
HpyCH4IV ACGT 2 cut(s) 468, 550
HpyCH4V TGCA 7 cut(s) 337, 510, 548, 724, 874, 937, 988
HpyF10VI GCNNNNNNNGC 3 cut(s) 59, 65, 692
HpyF3I CTNAG 3 cut(s) 674, 758, 846
HpySE526I ACGT 2 cut(s) 468, 550
Hsp92I GRCGYC 1 cut(s) 83
Hsp92II CATG 4 cut(s) 328, 361, 514, 592
HspAI GCGC 1 cut(s) 34
Kzo9I GATC 6 cut(s) 98, 114, 130, 235, 645, 718
LmnI GCTCC 1 cut(s) 861
Lsp1109I GCAGC 3 cut(s) 106, 679, 949
LweI GCATC 2 cut(s) 283, 818
MaeII ACGT 2 cut(s) 468, 550
MaeIII GTNAC 2 cut(s) 320, 929
MalI GATC 6 cut(s) 100, 116, 132, 237, 647, 720
MboI GATC 6 cut(s) 98, 114, 130, 235, 645, 718
MflI RGATCY 3 cut(s) 130, 645, 718
MhlI GDGCHC 1 cut(s) 230
MluCI AATT 7 cut(s) 171, 340, 580, 629, 703, 731, 958
MlyI GAGTC 2 cut(s) 185, 198
MmeI TCCRAC 2 cut(s) 585, 952
MspA1I CMGCKG 1 cut(s) 940
MspI CCGG 3 cut(s) 80, 128, 239
MspR9I CCNGG 2 cut(s) 371, 859
MvaI CCWGG 2 cut(s) 371, 859
MvnI CGCG 1 cut(s) 34
MwoI GCNNNNNNNGC 3 cut(s) 59, 65, 692
NdeII GATC 6 cut(s) 98, 114, 130, 235, 645, 718
NlaIII CATG 4 cut(s) 328, 361, 514, 592
NlaIV GGNNCC 2 cut(s) 144, 156
NmeAIII GCCGAG 1 cut(s) 35
NmuCI GTSAC 1 cut(s) 929
NspI RCATGY 2 cut(s) 361, 514
PaeR7I CTCGAG 1 cut(s) 206
PcsI WCGNNNNNNNCGW 1 cut(s) 38
PfeI GAWTC 2 cut(s) 678, 786
PflMI CCANNNNNTGG 1 cut(s) 317
PkrI GCNGC 5 cut(s) 61, 96, 694, 808, 939
PleI GAGTC 2 cut(s) 184, 198
PpsI GAGTC 2 cut(s) 184, 198
Ppu21I YACGTR 1 cut(s) 551
PsiI TTATAA 1 cut(s) 891
Psp6I CCWGG 2 cut(s) 369, 857
PspFI CCCAGC 1 cut(s) 864
PspGI CCWGG 2 cut(s) 369, 857
PspN4I GGNNCC 2 cut(s) 144, 156
PspPI GGNCC 1 cut(s) 67
PstI CTGCAG 1 cut(s) 726
PsuI RGATCY 3 cut(s) 130, 645, 718
PvuII CAGCTG 1 cut(s) 940
RsaI GTAC 3 cut(s) 105, 530, 624
RsaNI GTAC 3 cut(s) 104, 529, 623
SatI GCNGC 5 cut(s) 60, 95, 693, 807, 938
Sau3AI GATC 6 cut(s) 98, 114, 130, 235, 645, 718
Sau96I GGNCC 1 cut(s) 67
SchI GAGTC 2 cut(s) 185, 198
ScrFI CCNGG 2 cut(s) 371, 859
SduI GDGCHC 1 cut(s) 230
SfaNI GCATC 2 cut(s) 283, 818
SfcI CTRYAG 2 cut(s) 488, 722
Sfr274I CTCGAG 1 cut(s) 206
SlaI CTCGAG 1 cut(s) 206
SmlI CTYRAG 2 cut(s) 206, 696
SmoI CTYRAG 2 cut(s) 206, 696
Sse9I AATT 7 cut(s) 171, 340, 580, 629, 703, 731, 958
SsiI CCGC 5 cut(s) 59, 62, 395, 752, 807
StyD4I CCNGG 2 cut(s) 369, 857
TaaI ACNGT 1 cut(s) 436
TaiI ACGT 2 cut(s) 471, 553
TaqI TCGA 5 cut(s) 38, 207, 230, 524, 784
TasI AATT 7 cut(s) 171, 340, 580, 629, 703, 731, 958
TatI WGTACW 1 cut(s) 622
TauI GCSGC 2 cut(s) 62, 809
TfiI GAWTC 2 cut(s) 678, 786
TscAI CASTG 2 cut(s) 819, 881
TseFI GTSAC 1 cut(s) 929
TseI GCWGC 3 cut(s) 94, 692, 937
Tsp45I GTSAC 1 cut(s) 929
TspDTI ATGAA 2 cut(s) 269, 842
TspGWI ACGGA 2 cut(s) 91, 227
TspRI CASTG 2 cut(s) 819, 881
Van91I CCANNNNNTGG 1 cut(s) 317
XapI RAATTY 3 cut(s) 629, 703, 731
XceI RCATGY 2 cut(s) 361, 514
XhoI CTCGAG 1 cut(s) 206
XmiI GTMKAC 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.