RLG00000003915

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000541
Physical Location & Seq
Reverse (-)
54266449 .. 54268483
2035 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003915

Sequence Viewer

Length: 369 bp
ATGAAGTATAAAAGATGGCCTGAAAGGTTGGTTATTTTGGCTCATGTCAAAGCCTTGGTTGGTATGCGGGACAGTACTGAACTGCGCACTAGTTACTACAAAAATCCTCATATGCAGTTTAAGTCTTTGATTTACTACCTCACAGATCTAAATTTGGTGGATTACAAACTTGTGAAGTTCTTGCCTTCTATGATAGCTGCATCGGCTGTATTTCTAGTGAGAGTTATTATTACTAGATCAAAAATGAATCCTTGGTGTCCAGCACTGCAAGAATATACTGGTTATAAGGCAGTGGATTTGAGAGAATGTGTTCTTATCATTCACGACTTGTTTTTGGGTAGACGTGGTGGATCTTTGGTAGCTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

123

Amino Acids

14.17

Weight (kDa)

9.76

Isoelectric Point (pI)

43.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_C PF02984 36 - 121 2.5e-22 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000541)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47210 AT1G47210 AT1G47220 AT1G47230 AT1G47230 AT2G01310 AT5G43080 AT5G43080
fragaria_vesca FvH4_2g04770 FvH4_2g04770 FvH4_2g04770 FvH4_2g33510 FvH4_2g33510 FvH4_2g33510 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33530 FvH4_2g33530
malus_domestica MD05G1092000.v1.1 MD08G1091000.v1.1 MD08G1091200.v1.1 MD10G1100200.v1.1 MD10G1100700.v1.1 MD12G1105600.v1.1 MD15G1075100.v1.1 MD15G1075200.v1.1
prunus_persica Prupe.1G428000_v2.0.a1 Prupe.1G428100_v2.0.a1 Prupe.4G285800_v2.0.a1 Prupe.8G137700_v2.0.a1 Prupe.8G137700_v2.0.a1
pyrus_communis pycom05g09170 pycom08g07360 pycom08g07370 pycom15g07000 pycom15g07020
rosa_chinensis RchiOBHm_Chr3g0465621 RchiOBHm_Chr6g0254421 RchiOBHm_Chr6g0254451 RchiOBHm_Chr6g0308961 RchiOBHm_Chr6g0308971 RchiOBHm_Chr6g0308991 RchiOBHm_Chr7g0190851
rosa_laevigata RLG00000003915 RLG00000010598 RLG00000010599 RLG00000010600 RLG00000014913
rosa_multiflora Rmu_sc0009578.1_g000002 Rmu_sc0009578.1_g000003 Rmu_sc0029942.1_g000001 Rmu_sc0036151.1_g000001 Rmu_sc0036151.1_g000002 Rmu_sc0037719.1_g000001 Rmu_sc0042877.1_g000001 Rmu_ssc0000481.1_g000003
rosa_roxburghii Rroxscaffold_7G00159740 Rroxscaffold_7G00159750 Rroxscaffold_7G00159760 Rroxscaffold_7G00159770 Rroxscaffold_7G00210810
rosa_rugosa Rorug05G0552200 Rorug05G0552300 Rorug05G0552400
rosa_samantha Rh3CG081000 Rh6AG069300 Rh6AG481300 Rh6AG481600 Rh6BG062000 Rh6BG490400 Rh6BG490500 Rh6BG490600 Rh6CG062100 Rh6CG495700 Rh6CG495900 Rh6DG059100 Rh6DG481600 Rh6DG481700 Rh6DG481800
rosa_wichuraiana Rw6G006090 Rw6G041930 Rw6G041940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 285
Acc16I TGCGCA 1 cut(s) 86
AccI GTMKAC 1 cut(s) 340
AciI CCGC 1 cut(s) 67
AclWI GGATC 1 cut(s) 358
AcsI RAATTY 1 cut(s) 151
AfaI GTAC 1 cut(s) 76
AhlI ACTAGT 1 cut(s) 89
AjiI CACGTC 1 cut(s) 344
AluBI AGCT 2 cut(s) 197, 362
AluI AGCT 2 cut(s) 197, 362
AlwI GGATC 1 cut(s) 358
AoxI GGCC 1 cut(s) 17
ApeKI GCWGC 1 cut(s) 197
ApoI RAATTY 1 cut(s) 151
Asp700I GAANNNNTTC 1 cut(s) 309
AspLEI GCGC 1 cut(s) 87
BbvI GCAGC 1 cut(s) 184
BccI CCATC 1 cut(s) 9
BcuI ACTAGT 1 cut(s) 89
BfaI CTAG 3 cut(s) 90, 215, 234
BglII AGATCT 1 cut(s) 145
BisI GCNGC 1 cut(s) 198
BlsI GCNGC 1 cut(s) 199
BmcAI AGTACT 1 cut(s) 76
BmgBI CACGTC 1 cut(s) 344
BmsI GCATC 1 cut(s) 209
BsaJI CCNNGG 2 cut(s) 54, 251
Bse1I ACTGG 1 cut(s) 283
BseDI CCNNGG 2 cut(s) 54, 251
BseNI ACTGG 1 cut(s) 283
BseXI GCAGC 1 cut(s) 184
BshFI GGCC 1 cut(s) 19
BslFI GGGAC 1 cut(s) 83
BsmFI GGGAC 1 cut(s) 83
BsnI GGCC 1 cut(s) 19
Bsp143I GATC 3 cut(s) 145, 236, 350
BspACI CCGC 1 cut(s) 67
BspANI GGCC 1 cut(s) 19
BspPI GGATC 1 cut(s) 358
BsrI ACTGG 1 cut(s) 283
BssECI CCNNGG 2 cut(s) 54, 251
BssMI GATC 3 cut(s) 145, 236, 350
BssT1I CCWWGG 2 cut(s) 54, 251
Bst4CI ACNGT 1 cut(s) 74
BstHHI GCGC 1 cut(s) 87
BstKTI GATC 3 cut(s) 148, 239, 353
BstMBI GATC 3 cut(s) 145, 236, 350
BstMWI GCNNNNNNNGC 1 cut(s) 203
BstV1I GCAGC 1 cut(s) 184
BstX2I RGATCY 2 cut(s) 145, 350
BstYI RGATCY 2 cut(s) 145, 350
BsuRI GGCC 1 cut(s) 19
BtrI CACGTC 1 cut(s) 344
BtsI GCAGTG 2 cut(s) 263, 297
BtsIMutI CAGTG 2 cut(s) 263, 297
CfoI GCGC 1 cut(s) 87
Csp6I GTAC 1 cut(s) 75
CviAII CATG 1 cut(s) 44
CviJI RGCY 6 cut(s) 19, 41, 53, 197, 206, 362
CviKI_1 RGCY 6 cut(s) 19, 41, 53, 197, 206, 362
CviQI GTAC 1 cut(s) 75
DpnI GATC 3 cut(s) 147, 238, 352
DpnII GATC 3 cut(s) 145, 236, 350
Eco130I CCWWGG 2 cut(s) 54, 251
EcoT14I CCWWGG 2 cut(s) 54, 251
ErhI CCWWGG 2 cut(s) 54, 251
FaeI CATG 1 cut(s) 47
FaiI YATR 9 cut(s) 9, 45, 65, 111, 113, 191, 276, 285, 367
FaqI GGGAC 1 cut(s) 83
FatI CATG 1 cut(s) 43
FauI CCCGC 1 cut(s) 60
FauNDI CATATG 1 cut(s) 111
FblI GTMKAC 1 cut(s) 340
Fnu4HI GCNGC 1 cut(s) 198
Fsp4HI GCNGC 1 cut(s) 198
FspBI CTAG 3 cut(s) 90, 215, 234
FspI TGCGCA 1 cut(s) 86
GlaI GCGC 1 cut(s) 86
GluI GCNGC 1 cut(s) 198
HaeIII GGCC 1 cut(s) 19
HhaI GCGC 1 cut(s) 87
Hin1II CATG 1 cut(s) 47
Hin6I GCGC 1 cut(s) 85
HinP1I GCGC 1 cut(s) 85
HinfI GANTC 1 cut(s) 247
Hpy166II GTNNAC 1 cut(s) 341
Hpy188III TCNNGA 1 cut(s) 323
Hpy8I GTNNAC 1 cut(s) 341
HpyAV CCTTC 1 cut(s) 195
HpyCH4III ACNGT 1 cut(s) 74
HpyCH4IV ACGT 1 cut(s) 343
HpyCH4V TGCA 3 cut(s) 115, 200, 268
HpyF10VI GCNNNNNNNGC 1 cut(s) 203
HpySE526I ACGT 1 cut(s) 343
Hsp92II CATG 1 cut(s) 47
HspAI GCGC 1 cut(s) 85
Kzo9I GATC 3 cut(s) 145, 236, 350
LpnPI CCDG 3 cut(s) 33, 264, 273
Lsp1109I GCAGC 1 cut(s) 184
LweI GCATC 1 cut(s) 209
MaeI CTAG 3 cut(s) 90, 215, 234
MaeII ACGT 1 cut(s) 343
MaeIII GTNAC 1 cut(s) 92
MalI GATC 3 cut(s) 147, 238, 352
MboI GATC 3 cut(s) 145, 236, 350
MflI RGATCY 2 cut(s) 145, 350
MluCI AATT 1 cut(s) 151
MnlI CCTC 2 cut(s) 117, 149
MroXI GAANNNNTTC 1 cut(s) 309
MseI TTAA 1 cut(s) 120
MwoI GCNNNNNNNGC 1 cut(s) 203
NdeI CATATG 1 cut(s) 111
NdeII GATC 3 cut(s) 145, 236, 350
NlaIII CATG 1 cut(s) 47
NsbI TGCGCA 1 cut(s) 86
PdmI GAANNNNTTC 1 cut(s) 309
PfeI GAWTC 1 cut(s) 247
PkrI GCNGC 1 cut(s) 199
PsiI TTATAA 1 cut(s) 285
PsuI RGATCY 2 cut(s) 145, 350
RsaI GTAC 1 cut(s) 76
RsaNI GTAC 1 cut(s) 75
SaqAI TTAA 1 cut(s) 120
SatI GCNGC 1 cut(s) 198
Sau3AI GATC 3 cut(s) 145, 236, 350
ScaI AGTACT 1 cut(s) 76
SetI ASST 5 cut(s) 29, 141, 199, 346, 364
SfaNI GCATC 1 cut(s) 209
SpeI ACTAGT 1 cut(s) 89
Sse9I AATT 1 cut(s) 151
SsiI CCGC 1 cut(s) 67
SspMI CTAG 3 cut(s) 90, 215, 234
StyI CCWWGG 2 cut(s) 54, 251
TaaI ACNGT 1 cut(s) 74
TaiI ACGT 1 cut(s) 346
TasI AATT 1 cut(s) 151
TatI WGTACW 1 cut(s) 74
TfiI GAWTC 1 cut(s) 247
Tru1I TTAA 1 cut(s) 120
Tru9I TTAA 1 cut(s) 120
TscAI CASTG 2 cut(s) 270, 297
TseI GCWGC 1 cut(s) 197
TspDTI ATGAA 2 cut(s) 17, 260
TspRI CASTG 2 cut(s) 270, 297
XapI RAATTY 1 cut(s) 151
XmiI GTMKAC 1 cut(s) 340
XmnI GAANNNNTTC 1 cut(s) 309
XspI CTAG 3 cut(s) 90, 215, 234
ZrmI AGTACT 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.