RchiOBHm_Chr7g0190851

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000541
Physical Location & Seq
Forward (+)
9775106 .. 9776625
1520 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17050

Sequence Viewer

Length: 207 bp
ATGTATAAGCATCTTCATAAATTGGAGGTGGAGGGGAAGAATAGACCTTTATGTGGTTACATGGAGAAGGTGCAGAATTGTATTTCAGAACATATGCTAGAAGTCCTGGTGGATTGGTTGGTGGAGCTTGTGGAGGAATACAAGTTTGTTTCAAACACCCTTTATCTTACCATATCATATATTGACAGATACCTTTCCAACTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

68

Amino Acids

8.16

Weight (kDa)

5.49

Isoelectric Point (pI)

23.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 2 - 67 3e-14 Cyclin, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000541)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47210 AT1G47210 AT1G47220 AT1G47230 AT1G47230 AT2G01310 AT5G43080 AT5G43080
fragaria_vesca FvH4_2g04770 FvH4_2g04770 FvH4_2g04770 FvH4_2g33510 FvH4_2g33510 FvH4_2g33510 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33530 FvH4_2g33530
malus_domestica MD05G1092000.v1.1 MD08G1091000.v1.1 MD08G1091200.v1.1 MD10G1100200.v1.1 MD10G1100700.v1.1 MD12G1105600.v1.1 MD15G1075100.v1.1 MD15G1075200.v1.1
prunus_persica Prupe.1G428000_v2.0.a1 Prupe.1G428100_v2.0.a1 Prupe.4G285800_v2.0.a1 Prupe.8G137700_v2.0.a1 Prupe.8G137700_v2.0.a1
pyrus_communis pycom05g09170 pycom08g07360 pycom08g07370 pycom15g07000 pycom15g07020
rosa_chinensis RchiOBHm_Chr3g0465621 RchiOBHm_Chr6g0254421 RchiOBHm_Chr6g0254451 RchiOBHm_Chr6g0308961 RchiOBHm_Chr6g0308971 RchiOBHm_Chr6g0308991 RchiOBHm_Chr7g0190851
rosa_laevigata RLG00000003915 RLG00000010598 RLG00000010599 RLG00000010600 RLG00000014913
rosa_multiflora Rmu_sc0009578.1_g000002 Rmu_sc0009578.1_g000003 Rmu_sc0029942.1_g000001 Rmu_sc0036151.1_g000001 Rmu_sc0036151.1_g000002 Rmu_sc0037719.1_g000001 Rmu_sc0042877.1_g000001 Rmu_ssc0000481.1_g000003
rosa_roxburghii Rroxscaffold_7G00159740 Rroxscaffold_7G00159750 Rroxscaffold_7G00159760 Rroxscaffold_7G00159770 Rroxscaffold_7G00210810
rosa_rugosa Rorug05G0552200 Rorug05G0552300 Rorug05G0552400
rosa_samantha Rh3CG081000 Rh6AG069300 Rh6AG481300 Rh6AG481600 Rh6BG062000 Rh6BG490400 Rh6BG490500 Rh6BG490600 Rh6CG062100 Rh6CG495700 Rh6CG495900 Rh6DG059100 Rh6DG481600 Rh6DG481700 Rh6DG481800
rosa_wichuraiana Rw6G006090 Rw6G041930 Rw6G041940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 53
AgsI TTSAA 1 cut(s) 153
AjnI CCWGG 1 cut(s) 105
AluBI AGCT 1 cut(s) 127
AluI AGCT 1 cut(s) 127
BciT130I CCWGG 1 cut(s) 107
BfaI CTAG 1 cut(s) 98
Bme1390I CCNGG 1 cut(s) 107
BmrFI CCNGG 1 cut(s) 107
BmsI GCATC 1 cut(s) 19
Bsc4I CCNNNNNNNGG 1 cut(s) 53
BseBI CCWGG 1 cut(s) 107
BseLI CCNNNNNNNGG 1 cut(s) 53
BsgI GTGCAG 1 cut(s) 92
BslI CCNNNNNNNGG 1 cut(s) 53
Bst2UI CCWGG 1 cut(s) 107
BstNI CCWGG 1 cut(s) 107
BstSCI CCNGG 1 cut(s) 105
CviAII CATG 1 cut(s) 61
CviJI RGCY 1 cut(s) 127
CviKI_1 RGCY 1 cut(s) 127
EcoRII CCWGG 1 cut(s) 105
FaeI CATG 1 cut(s) 64
FatI CATG 1 cut(s) 60
FauNDI CATATG 1 cut(s) 93
FspBI CTAG 1 cut(s) 98
Hin1II CATG 1 cut(s) 64
Hpy188I TCNGA 1 cut(s) 88
HpyAV CCTTC 1 cut(s) 61
HpyCH4V TGCA 1 cut(s) 73
Hsp92II CATG 1 cut(s) 64
LmnI GCTCC 1 cut(s) 124
LpnPI CCDG 2 cut(s) 92, 119
LweI GCATC 1 cut(s) 19
MaeI CTAG 1 cut(s) 98
MaeIII GTNAC 1 cut(s) 56
MboII GAAGA 2 cut(s) 5, 49
MluCI AATT 2 cut(s) 20, 76
MnlI CCTC 3 cut(s) 19, 25, 127
MspR9I CCNGG 1 cut(s) 107
MvaI CCWGG 1 cut(s) 107
NdeI CATATG 1 cut(s) 93
NlaIII CATG 1 cut(s) 64
Psp6I CCWGG 1 cut(s) 105
PspGI CCWGG 1 cut(s) 105
ScrFI CCNGG 1 cut(s) 107
SetI ASST 5 cut(s) 30, 49, 72, 129, 195
SfaNI GCATC 1 cut(s) 19
SgeI CNNG 6 cut(s) 73, 110, 118, 119, 140, 154
Sse9I AATT 2 cut(s) 20, 76
SspMI CTAG 1 cut(s) 98
StyD4I CCNGG 1 cut(s) 105
TasI AATT 2 cut(s) 20, 76
TspDTI ATGAA 1 cut(s) 5
XspI CTAG 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.