Prupe.8G137700_v2.0.a1

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000541
Physical Location & Seq
Reverse (-)
15722211 .. 15725372
3162 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G137700.2

Sequence Viewer

Length: 1107 bp
ATGGACGAGCAAGAAAACAGCGTGAGCACCACGCTTTCGTCCAATAAGCGACCTTCAATGTCTCCGTCCCTGCAAATTCCAGCTCCCAAGAAGCGAGTCGTGTTGGGTGAGATCTCCAACTCGACAAACGACGTCGTTTCCACTCAGAACTGGGCTCCGAAGAAACCCAAGAGTAGCTTGAAGAAGAAGAAGAAGAAGAAGACGACGAAAGAGGAAGGGGAGGCCCTCAAGACTGAAATCGTTGTGAGATCCGTTGATCCACGCAAGTCTGATTACTCGTCTTCTATATATAGCCATCTTCTTTCATTGGAGATGGATATGAACAAGAGGTCTTCACCCAGTTACATGGGTAGGGTTCAAAATGATATATCACCAAACATGCGAGAAATCCTGGTGGATTGGTTGGTGGAGGTTGCTGAGGAATACCAGCTTGTTACAGACACCCTCTTTCTAACTGTATCATATATTGACAGATACCTGTCTTCATATGCTATCAGCAGGAACAAGTTACAGCTTCTTGGTGTTGCTTGCATGCTCGTTGCATCAAAGTATGAGGAGATTTGTCCTCCACGTGTTGAAGACTTCTGCTATATAACAGATAATACCTACATCATGGAAGAGGTGTTGGAAATGGAGAGGGATGTACTCAAATTCTTGAACTTCGATACTGGTCCTCCCACAACAAAGAATTTCCTCAGAATCTTAACGAGAGCTGCCTTGGAGAACTCCAAATCTTCTAAGACGCAATTGGAATTCTTGAGTTGTTATCTTGTGGAGCTAAGTTTGCTAGACTACAGTTGTGTCCAGTTCCTACCATCAGTAGTTGCTGCATCAGCTATTTTCCTTTCGAGGTTCACGATCCAACCTGAGGTGCATCCTTGGAGCCTGGCATTGCAATCATATTCAGGTTATAGACCATCCGACTTAAAGATTTGTGTCCGTGCCATTCATGACTTGCAGTTGAATATAAAAGGAAGCTCTTTGCGAGCAGTAAGGGATAAATACAGGAAGCCAAAGTATGCGTGCGTGGGAACATTGACTTCGTTACCTGAAATTCCTGCAATTTATTTTGAGGCCATCGACATACAAGTATTTTCAGGATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

369

Amino Acids

41.78

Weight (kDa)

8.5

Isoelectric Point (pI)

49.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000541)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47210 AT1G47210 AT1G47220 AT1G47230 AT1G47230 AT2G01310 AT5G43080 AT5G43080
fragaria_vesca FvH4_2g04770 FvH4_2g04770 FvH4_2g04770 FvH4_2g33510 FvH4_2g33510 FvH4_2g33510 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33511 FvH4_2g33530 FvH4_2g33530
malus_domestica MD05G1092000.v1.1 MD08G1091000.v1.1 MD08G1091200.v1.1 MD10G1100200.v1.1 MD10G1100700.v1.1 MD12G1105600.v1.1 MD15G1075100.v1.1 MD15G1075200.v1.1
prunus_persica Prupe.1G428000_v2.0.a1 Prupe.1G428100_v2.0.a1 Prupe.4G285800_v2.0.a1 Prupe.8G137700_v2.0.a1 Prupe.8G137700_v2.0.a1
pyrus_communis pycom05g09170 pycom08g07360 pycom08g07370 pycom15g07000 pycom15g07020
rosa_chinensis RchiOBHm_Chr3g0465621 RchiOBHm_Chr6g0254421 RchiOBHm_Chr6g0254451 RchiOBHm_Chr6g0308961 RchiOBHm_Chr6g0308971 RchiOBHm_Chr6g0308991 RchiOBHm_Chr7g0190851
rosa_laevigata RLG00000003915 RLG00000010598 RLG00000010599 RLG00000010600 RLG00000014913
rosa_multiflora Rmu_sc0009578.1_g000002 Rmu_sc0009578.1_g000003 Rmu_sc0029942.1_g000001 Rmu_sc0036151.1_g000001 Rmu_sc0036151.1_g000002 Rmu_sc0037719.1_g000001 Rmu_sc0042877.1_g000001 Rmu_ssc0000481.1_g000003
rosa_roxburghii Rroxscaffold_7G00159740 Rroxscaffold_7G00159750 Rroxscaffold_7G00159760 Rroxscaffold_7G00159770 Rroxscaffold_7G00210810
rosa_rugosa Rorug05G0552200 Rorug05G0552300 Rorug05G0552400
rosa_samantha Rh3CG081000 Rh6AG069300 Rh6AG481300 Rh6AG481600 Rh6BG062000 Rh6BG490400 Rh6BG490500 Rh6BG490600 Rh6CG062100 Rh6CG495700 Rh6CG495900 Rh6DG059100 Rh6DG481600 Rh6DG481700 Rh6DG481800
rosa_wichuraiana Rw6G006090 Rw6G041930 Rw6G041940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 135
AclWI GGATC 3 cut(s) 243, 251, 853
AcsI RAATTY 5 cut(s) 75, 650, 688, 752, 1053
AcvI CACGTG 1 cut(s) 572
AcyI GRCGYC 1 cut(s) 132
AfaI GTAC 1 cut(s) 645
AfiI CCNNNNNNNGG 1 cut(s) 868
AflIII ACRYGT 1 cut(s) 571
AgsI TTSAA 6 cut(s) 57, 181, 359, 578, 658, 964
AjnI CCWGG 2 cut(s) 390, 885
AluBI AGCT 8 cut(s) 83, 177, 430, 514, 713, 778, 836, 978
AluI AGCT 8 cut(s) 83, 177, 430, 514, 713, 778, 836, 978
Alw21I GWGCWC 1 cut(s) 29
Alw26I GTCTC 1 cut(s) 66
AlwI GGATC 3 cut(s) 243, 251, 853
AoxI GGCC 2 cut(s) 222, 1074
ApeKI GCWGC 2 cut(s) 713, 827
ApoI RAATTY 5 cut(s) 75, 650, 688, 752, 1053
AspS9I GGNCC 2 cut(s) 223, 671
AsuHPI GGTGA 3 cut(s) 119, 327, 363
AvaII GGWCC 1 cut(s) 671
AxyI CCTNAGG 1 cut(s) 867
BanII GRGCYC 1 cut(s) 157
BbrPI CACGTG 1 cut(s) 572
BbsI GAAGAC 5 cut(s) 206, 273, 324, 474, 585
Bbv12I GWGCWC 1 cut(s) 29
BbvCI CCTCAGC 1 cut(s) 417
BbvI GCAGC 2 cut(s) 700, 814
BccI CCATC 5 cut(s) 303, 307, 823, 925, 1085
BciT130I CCWGG 2 cut(s) 392, 887
BcoDI GTCTC 1 cut(s) 66
BfaI CTAG 1 cut(s) 788
BfmI CTRYAG 1 cut(s) 793
BglII AGATCT 1 cut(s) 111
BisI GCNGC 2 cut(s) 714, 828
BlsI GCNGC 2 cut(s) 715, 829
Bme1390I CCNGG 2 cut(s) 392, 887
Bme18I GGWCC 1 cut(s) 671
BmgT120I GGNCC 2 cut(s) 223, 671
BmiI GGNNCC 2 cut(s) 156, 884
BmrFI CCNGG 2 cut(s) 392, 887
BmrI ACTGGG 2 cut(s) 160, 333
BmsI GCATC 3 cut(s) 551, 839, 883
BmuI ACTGGG 2 cut(s) 160, 333
BpiI GAAGAC 5 cut(s) 206, 273, 324, 474, 585
Bpu10I CCTNAGC 1 cut(s) 417
BpuEI CTTGAG 2 cut(s) 212, 778
BsaAI YACGTR 1 cut(s) 572
BsaHI GRCGYC 1 cut(s) 132
BsaJI CCNNGG 2 cut(s) 717, 878
BsaXI ACNNNNNCTCC 2 cut(s) 658, 688
Bsc4I CCNNNNNNNGG 1 cut(s) 868
Bse1I ACTGG 4 cut(s) 155, 339, 673, 805
Bse21I CCTNAGG 1 cut(s) 867
Bse3DI GCAATG 1 cut(s) 890
BseBI CCWGG 2 cut(s) 392, 887
BseDI CCNNGG 2 cut(s) 717, 878
BseGI GGATG 3 cut(s) 646, 874, 917
BseLI CCNNNNNNNGG 1 cut(s) 868
BseMI GCAATG 1 cut(s) 890
BseMII CTCAG 4 cut(s) 158, 408, 709, 858
BseNI ACTGG 4 cut(s) 155, 339, 673, 805
BseRI GAGGAG 1 cut(s) 569
BseXI GCAGC 2 cut(s) 700, 814
BshFI GGCC 2 cut(s) 224, 1076
BsiHKAI GWGCWC 1 cut(s) 29
BslFI GGGAC 1 cut(s) 52
BslI CCNNNNNNNGG 1 cut(s) 868
BsmAI GTCTC 1 cut(s) 66
BsmFI GGGAC 1 cut(s) 52
BsnI GGCC 2 cut(s) 224, 1076
Bsp1286I GDGCHC 2 cut(s) 29, 157
Bsp143I GATC 4 cut(s) 111, 248, 256, 858
BspANI GGCC 2 cut(s) 224, 1076
BspCNI CTCAG 4 cut(s) 157, 409, 708, 859
BspHI TCATGA 1 cut(s) 949
BspLI GGNNCC 2 cut(s) 156, 884
BspPI GGATC 3 cut(s) 243, 251, 853
BsrDI GCAATG 1 cut(s) 890
BsrI ACTGG 4 cut(s) 155, 339, 673, 805
BssECI CCNNGG 2 cut(s) 717, 878
BssMI GATC 4 cut(s) 111, 248, 256, 858
BssNI GRCGYC 1 cut(s) 132
BssT1I CCWWGG 2 cut(s) 717, 878
Bst2UI CCWGG 2 cut(s) 392, 887
Bst4CI ACNGT 2 cut(s) 457, 797
Bst6I CTCTTC 1 cut(s) 612
BstACI GRCGYC 1 cut(s) 132
BstBAI YACGTR 1 cut(s) 572
BstC8I GCNNGC 4 cut(s) 529, 533, 987, 1024
BstDEI CTNAG 6 cut(s) 144, 417, 695, 738, 779, 867
BstF5I GGATG 3 cut(s) 646, 874, 917
BstKTI GATC 4 cut(s) 114, 251, 259, 861
BstMAI GTCTC 1 cut(s) 66
BstMBI GATC 4 cut(s) 111, 248, 256, 858
BstMWI GCNNNNNNNGC 2 cut(s) 784, 833
BstNI CCWGG 2 cut(s) 392, 887
BstNSI RCATGY 2 cut(s) 382, 535
BstSCI CCNGG 2 cut(s) 390, 885
BstSFI CTRYAG 1 cut(s) 793
BstV1I GCAGC 2 cut(s) 700, 814
BstV2I GAAGAC 5 cut(s) 206, 273, 324, 474, 585
BstX2I RGATCY 2 cut(s) 111, 248
BstXI CCANNNNNNTGG 1 cut(s) 346
BstYI RGATCY 2 cut(s) 111, 248
Bsu36I CCTNAGG 1 cut(s) 867
BsuRI GGCC 2 cut(s) 224, 1076
BtsCI GGATG 3 cut(s) 646, 874, 917
Cac8I GCNNGC 4 cut(s) 529, 533, 987, 1024
CciI TCATGA 1 cut(s) 949
Cfr13I GGNCC 2 cut(s) 223, 671
CseI GACGC 1 cut(s) 751
Csp6I GTAC 1 cut(s) 644
CviAII CATG 5 cut(s) 346, 379, 532, 613, 950
CviQI GTAC 1 cut(s) 644
DdeI CTNAG 6 cut(s) 144, 417, 695, 738, 779, 867
DpnI GATC 4 cut(s) 113, 250, 258, 860
DpnII GATC 4 cut(s) 111, 248, 256, 858
Eam1104I CTCTTC 1 cut(s) 612
EarI CTCTTC 1 cut(s) 612
Eco130I CCWWGG 2 cut(s) 717, 878
Eco24I GRGCYC 1 cut(s) 157
Eco47I GGWCC 1 cut(s) 671
Eco72I CACGTG 1 cut(s) 572
Eco81I CCTNAGG 1 cut(s) 867
EcoO109I RGGNCCY 1 cut(s) 223
EcoRI GAATTC 1 cut(s) 752
EcoRII CCWGG 2 cut(s) 390, 885
EcoT14I CCWWGG 2 cut(s) 717, 878
EcoT38I GRGCYC 1 cut(s) 157
ErhI CCWWGG 2 cut(s) 717, 878
FaeI CATG 5 cut(s) 349, 382, 535, 616, 953
FalI AAGNNNNNCTT 2 cut(s) 161, 193
FaqI GGGAC 1 cut(s) 52
FatI CATG 5 cut(s) 345, 378, 531, 612, 949
FauNDI CATATG 1 cut(s) 487
Fnu4HI GCNGC 2 cut(s) 714, 828
FokI GGATG 3 cut(s) 653, 861, 904
FriOI GRGCYC 1 cut(s) 157
Fsp4HI GCNGC 2 cut(s) 714, 828
FspBI CTAG 1 cut(s) 788
GluI GCNGC 2 cut(s) 714, 828
HaeIII GGCC 2 cut(s) 224, 1076
HgaI GACGC 1 cut(s) 751
Hin1I GRCGYC 1 cut(s) 132
Hin1II CATG 5 cut(s) 349, 382, 535, 616, 953
HinfI GANTC 3 cut(s) 96, 699, 1101
HphI GGTGA 3 cut(s) 119, 327, 363
Hpy166II GTNNAC 1 cut(s) 855
Hpy188I TCNGA 6 cut(s) 147, 159, 271, 698, 922, 1106
Hpy188III TCNNGA 6 cut(s) 229, 655, 757, 856, 950, 1098
Hpy8I GTNNAC 1 cut(s) 855
Hpy99I CGWCG 3 cut(s) 134, 137, 208
HpyAV CCTTC 2 cut(s) 63, 209
HpyCH4III ACNGT 2 cut(s) 457, 797
HpyCH4IV ACGT 2 cut(s) 132, 571
HpyCH4V TGCA 8 cut(s) 73, 531, 542, 830, 874, 895, 958, 1061
HpyF10VI GCNNNNNNNGC 2 cut(s) 784, 833
HpyF3I CTNAG 6 cut(s) 144, 417, 695, 738, 779, 867
HpySE526I ACGT 2 cut(s) 132, 571
Hsp92I GRCGYC 1 cut(s) 132
Hsp92II CATG 5 cut(s) 349, 382, 535, 616, 953
Kzo9I GATC 4 cut(s) 111, 248, 256, 858
LmnI GCTCC 4 cut(s) 88, 160, 775, 882
Lsp1109I GCAGC 2 cut(s) 700, 814
LweI GCATC 3 cut(s) 551, 839, 883
MaeI CTAG 1 cut(s) 788
MaeII ACGT 2 cut(s) 132, 571
MaeIII GTNAC 4 cut(s) 341, 433, 507, 1044
MalI GATC 4 cut(s) 113, 250, 258, 860
MboI GATC 4 cut(s) 111, 248, 256, 858
MfeI CAATTG 1 cut(s) 746
MflI RGATCY 2 cut(s) 111, 248
MhlI GDGCHC 2 cut(s) 29, 157
MluCI AATT 7 cut(s) 75, 650, 688, 746, 752, 1053, 1062
MlyI GAGTC 1 cut(s) 105
MmeI TCCRAC 4 cut(s) 141, 606, 886, 945
MseI TTAA 2 cut(s) 704, 926
MspR9I CCNGG 2 cut(s) 392, 887
MunI CAATTG 1 cut(s) 746
MvaI CCWGG 2 cut(s) 392, 887
MwoI GCNNNNNNNGC 2 cut(s) 784, 833
NdeI CATATG 1 cut(s) 487
NdeII GATC 4 cut(s) 111, 248, 256, 858
NlaIII CATG 5 cut(s) 349, 382, 535, 616, 953
NlaIV GGNNCC 2 cut(s) 156, 884
NspI RCATGY 2 cut(s) 382, 535
PaeI GCATGC 1 cut(s) 535
PagI TCATGA 1 cut(s) 949
PcsI WCGNNNNNNNCGW 1 cut(s) 854
PfeI GAWTC 2 cut(s) 699, 1101
PkrI GCNGC 2 cut(s) 715, 829
PleI GAGTC 1 cut(s) 104
PmaCI CACGTG 1 cut(s) 572
PmlI CACGTG 1 cut(s) 572
PpsI GAGTC 1 cut(s) 104
Ppu21I YACGTR 1 cut(s) 572
Psp6I CCWGG 2 cut(s) 390, 885
PspCI CACGTG 1 cut(s) 572
PspGI CCWGG 2 cut(s) 390, 885
PspN4I GGNNCC 2 cut(s) 156, 884
PspPI GGNCC 2 cut(s) 223, 671
PsuI RGATCY 2 cut(s) 111, 248
RsaI GTAC 1 cut(s) 645
RsaNI GTAC 1 cut(s) 644
SaqAI TTAA 2 cut(s) 704, 926
SatI GCNGC 2 cut(s) 714, 828
Sau3AI GATC 4 cut(s) 111, 248, 256, 858
Sau96I GGNCC 2 cut(s) 223, 671
SchI GAGTC 1 cut(s) 105
ScrFI CCNGG 2 cut(s) 392, 887
SduI GDGCHC 2 cut(s) 29, 157
SfaNI GCATC 3 cut(s) 551, 839, 883
SfcI CTRYAG 1 cut(s) 793
SinI GGWCC 1 cut(s) 671
SmlI CTYRAG 2 cut(s) 227, 757
SmoI CTYRAG 2 cut(s) 227, 757
SphI GCATGC 1 cut(s) 535
Sse9I AATT 7 cut(s) 75, 650, 688, 746, 752, 1053, 1062
SspMI CTAG 1 cut(s) 788
StyD4I CCNGG 2 cut(s) 390, 885
StyI CCWWGG 2 cut(s) 717, 878
TaaI ACNGT 2 cut(s) 457, 797
TaiI ACGT 2 cut(s) 135, 574
TaqI TCGA 4 cut(s) 122, 663, 848, 1080
TasI AATT 7 cut(s) 75, 650, 688, 746, 752, 1053, 1062
TatI WGTACW 1 cut(s) 643
TfiI GAWTC 2 cut(s) 699, 1101
Tru1I TTAA 2 cut(s) 704, 926
Tru9I TTAA 2 cut(s) 704, 926
TseI GCWGC 2 cut(s) 713, 827
TspDTI ATGAA 4 cut(s) 294, 335, 474, 938
TspGWI ACGGA 3 cut(s) 54, 241, 929
VpaK11BI GGWCC 1 cut(s) 671
XapI RAATTY 5 cut(s) 75, 650, 688, 752, 1053
XceI RCATGY 2 cut(s) 382, 535
XspI CTAG 1 cut(s) 788
ZraI GACGTC 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.