Dehydrogenase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Biotin_lipoyl | PF00364 | 98 - 167 | 3.6e-18 | Biotin-requiring enzyme |
| BSH_RND | PF25917 | 107 - 166 | 9.3e-06 | RND MFP, barrel-sandwich hybrid domain |
| BSH_CusB | PF25919 | 115 - 167 | 1.9e-08 | CusB, barrel-sandwich hybrid domain |
| 2-oxoacid_dh | PF00198 | 234 - 462 | 1.1e-82 | 2-oxoacid dehydrogenases acyltransferase (catalytic domain) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1175 |
| Acc36I | ACCTGC | 1 cut(s) | 568 |
| Acc65I | GGTACC | 1 cut(s) | 998 |
| AccB1I | GGYRCC | 6 cut(s) | 136, 323, 532, 547, 631, 998 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 431 |
| AccII | CGCG | 1 cut(s) | 1289 |
| AciI | CCGC | 5 cut(s) | 333, 512, 641, 653, 680 |
| AclWI | GGATC | 3 cut(s) | 433, 1141, 1361 |
| AcsI | RAATTY | 1 cut(s) | 498 |
| AcuI | CTGAAG | 2 cut(s) | 362, 1119 |
| AdeI | CACNNNGTG | 1 cut(s) | 865 |
| AfaI | GTAC | 3 cut(s) | 607, 836, 1000 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 302, 431, 1351 |
| AgsI | TTSAA | 8 cut(s) | 201, 392, 476, 602, 754, 793, 854, 1227 |
| AjnI | CCWGG | 3 cut(s) | 181, 349, 478 |
| AleI | CACNNNNGTG | 1 cut(s) | 303 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1248, 1280 |
| AluBI | AGCT | 7 cut(s) | 29, 162, 287, 368, 671, 685, 823 |
| AluI | AGCT | 7 cut(s) | 29, 162, 287, 368, 671, 685, 823 |
| Alw26I | GTCTC | 4 cut(s) | 122, 528, 963, 1085 |
| AlwI | GGATC | 3 cut(s) | 433, 1141, 1361 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 98 |
| AoxI | GGCC | 2 cut(s) | 251, 1271 |
| ApeKI | GCWGC | 2 cut(s) | 682, 899 |
| ApoI | RAATTY | 1 cut(s) | 498 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1222 |
| Asp718I | GGTACC | 1 cut(s) | 998 |
| AspLEI | GCGC | 2 cut(s) | 1291, 1344 |
| AspS9I | GGNCC | 1 cut(s) | 252 |
| AsuHPI | GGTGA | 3 cut(s) | 161, 317, 630 |
| AsuNHI | GCTAGC | 1 cut(s) | 419 |
| AxyI | CCTNAGG | 1 cut(s) | 693 |
| BaeGI | GKGCMC | 1 cut(s) | 913 |
| BanI | GGYRCC | 6 cut(s) | 136, 323, 532, 547, 631, 998 |
| BauI | CACGAG | 2 cut(s) | 84, 141 |
| BbvI | GCAGC | 2 cut(s) | 694, 886 |
| BccI | CCATC | 8 cut(s) | 174, 237, 314, 643, 664, 941, 1117, 1310 |
| BceAI | ACGGC | 1 cut(s) | 1329 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 65, 99 |
| BciT130I | CCWGG | 3 cut(s) | 183, 351, 480 |
| BcoDI | GTCTC | 4 cut(s) | 122, 528, 963, 1085 |
| BfaI | CTAG | 4 cut(s) | 329, 420, 452, 747 |
| BfmI | CTRYAG | 1 cut(s) | 927 |
| BfuAI | ACCTGC | 1 cut(s) | 568 |
| BisI | GCNGC | 3 cut(s) | 333, 683, 900 |
| BlsI | GCNGC | 3 cut(s) | 334, 684, 901 |
| Bme1390I | CCNGG | 3 cut(s) | 183, 351, 480 |
| BmgT120I | GGNCC | 1 cut(s) | 252 |
| BmiI | GGNNCC | 8 cut(s) | 138, 325, 534, 549, 633, 714, 1000, 1105 |
| BmrFI | CCNGG | 3 cut(s) | 183, 351, 480 |
| BmsI | GCATC | 3 cut(s) | 505, 832, 1024 |
| BmtI | GCTAGC | 1 cut(s) | 423 |
| BpmI | CTGGAG | 1 cut(s) | 899 |
| Bsa29I | ATCGAT | 2 cut(s) | 945, 1116 |
| BsaAI | YACGTR | 1 cut(s) | 976 |
| BsaI | GGTCTC | 1 cut(s) | 1085 |
| BsaJI | CCNNGG | 4 cut(s) | 182, 223, 627, 1268 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 456, 486, 1245, 1275 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 302, 431, 1351 |
| Bse1I | ACTGG | 1 cut(s) | 1022 |
| Bse21I | CCTNAGG | 1 cut(s) | 693 |
| Bse3DI | GCAATG | 1 cut(s) | 71 |
| BseBI | CCWGG | 3 cut(s) | 183, 351, 480 |
| BseCI | ATCGAT | 2 cut(s) | 945, 1116 |
| BseDI | CCNNGG | 4 cut(s) | 182, 223, 627, 1268 |
| BseGI | GGATG | 5 cut(s) | 280, 520, 656, 847, 1360 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 302, 431, 1351 |
| BseMI | GCAATG | 1 cut(s) | 71 |
| BseMII | CTCAG | 6 cut(s) | 552, 576, 776, 845, 1214, 1385 |
| BseNI | ACTGG | 1 cut(s) | 1022 |
| BseRI | GAGGAG | 2 cut(s) | 567, 1188 |
| BseSI | GKGCMC | 1 cut(s) | 913 |
| BseXI | GCAGC | 2 cut(s) | 694, 886 |
| BseYI | CCCAGC | 1 cut(s) | 424 |
| Bsh1236I | CGCG | 1 cut(s) | 1289 |
| BshFI | GGCC | 2 cut(s) | 253, 1273 |
| BshNI | GGYRCC | 6 cut(s) | 136, 323, 532, 547, 631, 998 |
| BshVI | ATCGAT | 2 cut(s) | 945, 1116 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 302, 431, 1351 |
| BsmAI | GTCTC | 4 cut(s) | 122, 528, 963, 1085 |
| BsmBI | CGTCTC | 1 cut(s) | 122 |
| BsmI | GAATGC | 2 cut(s) | 1222, 1224 |
| BsnI | GGCC | 2 cut(s) | 253, 1273 |
| Bso31I | GGTCTC | 1 cut(s) | 1085 |
| Bsp1286I | GDGCHC | 1 cut(s) | 913 |
| Bsp143I | GATC | 5 cut(s) | 438, 827, 1133, 1300, 1366 |
| BspACI | CCGC | 5 cut(s) | 333, 512, 641, 653, 680 |
| BspANI | GGCC | 2 cut(s) | 253, 1273 |
| BspCNI | CTCAG | 6 cut(s) | 551, 577, 775, 844, 1213, 1384 |
| BspDI | ATCGAT | 2 cut(s) | 945, 1116 |
| BspFNI | CGCG | 1 cut(s) | 1289 |
| BspLI | GGNNCC | 8 cut(s) | 138, 325, 534, 549, 633, 714, 1000, 1105 |
| BspMI | ACCTGC | 1 cut(s) | 568 |
| BspOI | GCTAGC | 1 cut(s) | 423 |
| BspPI | GGATC | 3 cut(s) | 433, 1141, 1361 |
| BspQI | GCTCTTC | 1 cut(s) | 49 |
| BspT107I | GGYRCC | 6 cut(s) | 136, 323, 532, 547, 631, 998 |
| BspTNI | GGTCTC | 1 cut(s) | 1085 |
| BsrDI | GCAATG | 1 cut(s) | 71 |
| BsrI | ACTGG | 1 cut(s) | 1022 |
| BssECI | CCNNGG | 4 cut(s) | 182, 223, 627, 1268 |
| BssMI | GATC | 5 cut(s) | 438, 827, 1133, 1300, 1366 |
| BssSI | CACGAG | 2 cut(s) | 84, 141 |
| BssT1I | CCWWGG | 2 cut(s) | 223, 627 |
| Bst2BI | CACGAG | 2 cut(s) | 84, 141 |
| Bst2UI | CCWGG | 3 cut(s) | 183, 351, 480 |
| Bst4CI | ACNGT | 7 cut(s) | 173, 197, 218, 472, 666, 1079, 1144 |
| Bst6I | CTCTTC | 2 cut(s) | 49, 1315 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 98 |
| BstBAI | YACGTR | 1 cut(s) | 976 |
| BstC8I | GCNNGC | 2 cut(s) | 12, 421 |
| BstDEI | CTNAG | 9 cut(s) | 538, 585, 693, 762, 831, 1005, 1086, 1200, 1371 |
| BstEII | GGTNACC | 1 cut(s) | 218 |
| BstF5I | GGATG | 5 cut(s) | 280, 520, 656, 847, 1360 |
| BstFNI | CGCG | 1 cut(s) | 1289 |
| BstHHI | GCGC | 2 cut(s) | 1291, 1344 |
| BstKTI | GATC | 5 cut(s) | 441, 830, 1136, 1303, 1369 |
| BstMAI | GTCTC | 4 cut(s) | 122, 528, 963, 1085 |
| BstMBI | GATC | 5 cut(s) | 438, 827, 1133, 1300, 1366 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 98, 374, 425, 908, 1091 |
| BstNI | CCWGG | 3 cut(s) | 183, 351, 480 |
| BstPI | GGTNACC | 1 cut(s) | 218 |
| BstSCI | CCNGG | 3 cut(s) | 181, 349, 478 |
| BstSFI | CTRYAG | 1 cut(s) | 927 |
| BstSLI | GKGCMC | 1 cut(s) | 913 |
| BstUI | CGCG | 1 cut(s) | 1289 |
| BstV1I | GCAGC | 2 cut(s) | 694, 886 |
| BstX2I | RGATCY | 1 cut(s) | 1366 |
| BstYI | RGATCY | 1 cut(s) | 1366 |
| Bsu15I | ATCGAT | 2 cut(s) | 945, 1116 |
| Bsu36I | CCTNAGG | 1 cut(s) | 693 |
| BsuRI | GGCC | 2 cut(s) | 253, 1273 |
| BsuTUI | ATCGAT | 2 cut(s) | 945, 1116 |
| BtsCI | GGATG | 5 cut(s) | 280, 520, 656, 847, 1360 |
| BtsI | GCAGTG | 1 cut(s) | 99 |
| BtsIMutI | CAGTG | 2 cut(s) | 99, 315 |
| BveI | ACCTGC | 1 cut(s) | 568 |
| Cac8I | GCNNGC | 2 cut(s) | 12, 421 |
| CaiI | CAGNNNCTG | 1 cut(s) | 98 |
| CfoI | GCGC | 2 cut(s) | 1291, 1344 |
| Cfr13I | GGNCC | 1 cut(s) | 252 |
| ClaI | ATCGAT | 2 cut(s) | 945, 1116 |
| Csp6I | GTAC | 3 cut(s) | 606, 835, 999 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1230, 1265 |
| CviAII | CATG | 3 cut(s) | 152, 301, 527 |
| CviQI | GTAC | 3 cut(s) | 606, 835, 999 |
| DdeI | CTNAG | 9 cut(s) | 538, 585, 693, 762, 831, 1005, 1086, 1200, 1371 |
| DpnI | GATC | 5 cut(s) | 440, 829, 1135, 1302, 1368 |
| DpnII | GATC | 5 cut(s) | 438, 827, 1133, 1300, 1366 |
| DraIII | CACNNNGTG | 1 cut(s) | 865 |
| Eam1104I | CTCTTC | 2 cut(s) | 49, 1315 |
| EarI | CTCTTC | 2 cut(s) | 49, 1315 |
| Eco130I | CCWWGG | 2 cut(s) | 223, 627 |
| Eco31I | GGTCTC | 1 cut(s) | 1085 |
| Eco32I | GATATC | 2 cut(s) | 958, 982 |
| Eco57I | CTGAAG | 2 cut(s) | 362, 1119 |
| Eco81I | CCTNAGG | 1 cut(s) | 693 |
| Eco91I | GGTNACC | 1 cut(s) | 218 |
| EcoO109I | RGGNCCY | 1 cut(s) | 252 |
| EcoO65I | GGTNACC | 1 cut(s) | 218 |
| EcoRII | CCWGG | 3 cut(s) | 181, 349, 478 |
| EcoRV | GATATC | 2 cut(s) | 958, 982 |
| EcoT14I | CCWWGG | 2 cut(s) | 223, 627 |
| EcoT22I | ATGCAT | 1 cut(s) | 1224 |
| ErhI | CCWWGG | 2 cut(s) | 223, 627 |
| Esp3I | CGTCTC | 1 cut(s) | 122 |
| FaeI | CATG | 3 cut(s) | 155, 304, 530 |
| FatI | CATG | 3 cut(s) | 151, 300, 526 |
| FauNDI | CATATG | 1 cut(s) | 1391 |
| Fnu4HI | GCNGC | 3 cut(s) | 333, 683, 900 |
| FokI | GGATG | 5 cut(s) | 287, 527, 643, 854, 1367 |
| Fsp4HI | GCNGC | 3 cut(s) | 333, 683, 900 |
| FspBI | CTAG | 4 cut(s) | 329, 420, 452, 747 |
| GlaI | GCGC | 2 cut(s) | 1290, 1343 |
| GluI | GCNGC | 3 cut(s) | 333, 683, 900 |
| GsaI | CCCAGC | 1 cut(s) | 428 |
| GsuI | CTGGAG | 1 cut(s) | 899 |
| HaeIII | GGCC | 2 cut(s) | 253, 1273 |
| HhaI | GCGC | 2 cut(s) | 1291, 1344 |
| Hin1II | CATG | 3 cut(s) | 155, 304, 530 |
| Hin6I | GCGC | 2 cut(s) | 1289, 1342 |
| HinP1I | GCGC | 2 cut(s) | 1289, 1342 |
| HinfI | GANTC | 2 cut(s) | 308, 758 |
| HphI | GGTGA | 3 cut(s) | 161, 317, 630 |
| Hpy188I | TCNGA | 8 cut(s) | 265, 342, 541, 765, 816, 827, 1269, 1374 |
| Hpy188III | TCNNGA | 4 cut(s) | 57, 191, 851, 1385 |
| HpyAV | CCTTC | 4 cut(s) | 455, 582, 1084, 1094 |
| HpyCH4III | ACNGT | 7 cut(s) | 173, 197, 218, 472, 666, 1079, 1144 |
| HpyCH4IV | ACGT | 3 cut(s) | 131, 975, 1237 |
| HpyCH4V | TGCA | 9 cut(s) | 76, 92, 238, 383, 494, 617, 938, 1222, 1234 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 98, 374, 425, 908, 1091 |
| HpyF3I | CTNAG | 9 cut(s) | 538, 585, 693, 762, 831, 1005, 1086, 1200, 1371 |
| HpySE526I | ACGT | 3 cut(s) | 131, 975, 1237 |
| Hsp92II | CATG | 3 cut(s) | 155, 304, 530 |
| HspAI | GCGC | 2 cut(s) | 1289, 1342 |
| KpnI | GGTACC | 1 cut(s) | 1002 |
| Kzo9I | GATC | 5 cut(s) | 438, 827, 1133, 1300, 1366 |
| LguI | GCTCTTC | 1 cut(s) | 49 |
| LmnI | GCTCC | 2 cut(s) | 568, 828 |
| Lsp1109I | GCAGC | 2 cut(s) | 694, 886 |
| LweI | GCATC | 3 cut(s) | 505, 832, 1024 |
| MaeI | CTAG | 4 cut(s) | 329, 420, 452, 747 |
| MaeII | ACGT | 3 cut(s) | 131, 975, 1237 |
| MaeIII | GTNAC | 2 cut(s) | 218, 403 |
| MalI | GATC | 5 cut(s) | 440, 829, 1135, 1302, 1368 |
| MboI | GATC | 5 cut(s) | 438, 827, 1133, 1300, 1366 |
| MboII | GAAGA | 6 cut(s) | 36, 39, 355, 1332, 1373, 1376 |
| MfeI | CAATTG | 1 cut(s) | 1227 |
| MflI | RGATCY | 1 cut(s) | 1366 |
| MhlI | GDGCHC | 1 cut(s) | 913 |
| MluCI | AATT | 5 cut(s) | 104, 387, 498, 1227, 1311 |
| MlyI | GAGTC | 1 cut(s) | 752 |
| Mph1103I | ATGCAT | 1 cut(s) | 1224 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1222 |
| MseI | TTAA | 2 cut(s) | 894, 1350 |
| MslI | CAYNNNNRTG | 1 cut(s) | 303 |
| MspR9I | CCNGG | 3 cut(s) | 183, 351, 480 |
| MunI | CAATTG | 1 cut(s) | 1227 |
| Mva1269I | GAATGC | 2 cut(s) | 1222, 1224 |
| MvaI | CCWGG | 3 cut(s) | 183, 351, 480 |
| MvnI | CGCG | 1 cut(s) | 1289 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 98, 374, 425, 908, 1091 |
| NdeI | CATATG | 1 cut(s) | 1391 |
| NdeII | GATC | 5 cut(s) | 438, 827, 1133, 1300, 1366 |
| NheI | GCTAGC | 1 cut(s) | 419 |
| NlaIII | CATG | 3 cut(s) | 155, 304, 530 |
| NlaIV | GGNNCC | 8 cut(s) | 138, 325, 534, 549, 633, 714, 1000, 1105 |
| NsiI | ATGCAT | 1 cut(s) | 1224 |
| OliI | CACNNNNGTG | 1 cut(s) | 303 |
| PciSI | GCTCTTC | 1 cut(s) | 49 |
| PctI | GAATGC | 2 cut(s) | 1222, 1224 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1222 |
| PfeI | GAWTC | 1 cut(s) | 308 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 431 |
| PkrI | GCNGC | 3 cut(s) | 334, 684, 901 |
| PleI | GAGTC | 1 cut(s) | 752 |
| PpsI | GAGTC | 1 cut(s) | 752 |
| Ppu21I | YACGTR | 1 cut(s) | 976 |
| PsiI | TTATAA | 1 cut(s) | 1175 |
| Psp6I | CCWGG | 3 cut(s) | 181, 349, 478 |
| PspEI | GGTNACC | 1 cut(s) | 218 |
| PspFI | CCCAGC | 1 cut(s) | 424 |
| PspGI | CCWGG | 3 cut(s) | 181, 349, 478 |
| PspN4I | GGNNCC | 8 cut(s) | 138, 325, 534, 549, 633, 714, 1000, 1105 |
| PspPI | GGNCC | 1 cut(s) | 252 |
| PstNI | CAGNNNCTG | 1 cut(s) | 98 |
| PsuI | RGATCY | 1 cut(s) | 1366 |
| RsaI | GTAC | 3 cut(s) | 607, 836, 1000 |
| RsaNI | GTAC | 3 cut(s) | 606, 835, 999 |
| RseI | CAYNNNNRTG | 1 cut(s) | 303 |
| SapI | GCTCTTC | 1 cut(s) | 49 |
| SaqAI | TTAA | 2 cut(s) | 894, 1350 |
| SatI | GCNGC | 3 cut(s) | 333, 683, 900 |
| Sau3AI | GATC | 5 cut(s) | 438, 827, 1133, 1300, 1366 |
| Sau96I | GGNCC | 1 cut(s) | 252 |
| SchI | GAGTC | 1 cut(s) | 752 |
| ScrFI | CCNGG | 3 cut(s) | 183, 351, 480 |
| SduI | GDGCHC | 1 cut(s) | 913 |
| SfaNI | GCATC | 3 cut(s) | 505, 832, 1024 |
| SfcI | CTRYAG | 1 cut(s) | 927 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 303 |
| Sse9I | AATT | 5 cut(s) | 104, 387, 498, 1227, 1311 |
| SsiI | CCGC | 5 cut(s) | 333, 512, 641, 653, 680 |
| SspMI | CTAG | 4 cut(s) | 329, 420, 452, 747 |
| StyD4I | CCNGG | 3 cut(s) | 181, 349, 478 |
| StyI | CCWWGG | 2 cut(s) | 223, 627 |
| TaaI | ACNGT | 7 cut(s) | 173, 197, 218, 472, 666, 1079, 1144 |
| TaiI | ACGT | 3 cut(s) | 134, 978, 1240 |
| TaqI | TCGA | 3 cut(s) | 945, 1116, 1386 |
| TasI | AATT | 5 cut(s) | 104, 387, 498, 1227, 1311 |
| TatI | WGTACW | 1 cut(s) | 834 |
| TauI | GCSGC | 1 cut(s) | 335 |
| TfiI | GAWTC | 1 cut(s) | 308 |
| Tru1I | TTAA | 2 cut(s) | 894, 1350 |
| Tru9I | TTAA | 2 cut(s) | 894, 1350 |
| TscAI | CASTG | 2 cut(s) | 99, 322 |
| TseI | GCWGC | 2 cut(s) | 682, 899 |
| TspDTI | ATGAA | 6 cut(s) | 98, 249, 810, 833, 880, 1061 |
| TspGWI | ACGGA | 1 cut(s) | 876 |
| TspRI | CASTG | 2 cut(s) | 99, 322 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 431 |
| XapI | RAATTY | 1 cut(s) | 498 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1222 |
| XspI | CTAG | 4 cut(s) | 329, 420, 452, 747 |
| Zsp2I | ATGCAT | 1 cut(s) | 1224 |