Rh2DG522600

Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000387
Physical Location & Seq
Forward (+)
74802047 .. 74803842
1796 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG522600.1

Sequence Viewer

Length: 282 bp
ATGGGAGACTGGGAGGTGACCAGATTCTATTTAAGCAAAGGGAGAAAGGCAGAAAACCAACGCATAAGCAAATCCATACATGTTCCCTCTGAAGATTTTGCACTTGCGGGCAACCGCAACGACAAGAATGAGAAACTAGAAGGTATTCCTGTGATCAATTGCAGGACAAATTTGATGAAGCTTCGTTGTGACTTCAAGGATGCATCTGTTGAGAATCATGGGGTCAAGTTGGGGCTTATGTCGAGATTCATCAAGGTTGTTGTCAGTGGGGTCCAAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00020 ko00310 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00310 map01100 map01110 map01120 map01130 map01200
Pfam Domains
Protein Families
2-oxoacid_dh Biotin_lipoyl

Protein Analysis

93

Amino Acids

10.54

Weight (kDa)

9.51

Isoelectric Point (pI)

20.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000387)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26910 AT4G26910 AT4G26910 AT5G55070 AT5G55070
fragaria_vesca FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960
malus_domestica MD03G1198100.v1.1 MD09G1110700.v1.1 MD17G1098600.v1.1
prunus_persica Prupe.3G215800_v2.0.a1 Prupe.4G216900_v2.0.a1 Prupe.4G216900_v2.0.a1
pyrus_communis pycom03g14960 pycom09g03320 pycom17g09400
rosa_chinensis RchiOBHm_Chr2g0119431 RchiOBHm_Chr2g0119441 RchiOBHm_Chr2g0158941 RchiOBHm_Chr5g0040581 RchiOBHm_Chr5g0052421 RchiOBHm_Chr5g0052431
rosa_laevigata RLG00000002270 RLG00000012296 RLG00000021125 RLG00000031115 RLG00000033989
rosa_multiflora Rmu_co8099772.1_g000001 Rmu_co8181026.1_g000001 Rmu_co8403685.1_g000001 Rmu_sc0001893.1_g000003 Rmu_sc0004787.1_g000003 Rmu_sc0007967.1_g000007 Rmu_sc0010369.1_g000001 Rmu_ssc0000174.1_g000008
rosa_roxburghii Rroxscaffold_1G00040090 Rroxscaffold_1G00040800 Rroxscaffold_1G00049000 Rroxscaffold_2G00090860 Rroxscaffold_2G00122640 Rroxscaffold_2G00127540 Rroxscaffold_2G00128360 Rroxscaffold_3G00249890 Rroxscaffold_4G00314140 Rroxscaffold_5G00345820 Rroxscaffold_5G00345830 Rroxscaffold_5G00371680 Rroxscaffold_7G00164980 Rroxscaffold_7G00209200
rosa_rugosa Rorug01G0153500.1 Rorug02G0473100 Rorug02G0473200 Rorug02G0473200 Rorug03G0343200 Rorug05G0185800
rosa_samantha Rh1AG155300 Rh1AG275400 Rh1BG123600 Rh1CG026200 Rh1CG145600 Rh2AG539600 Rh2BG510900 Rh2BG552500 Rh2CG522900 Rh2DG522600 Rh2DG522700 Rh2DG562200 Rh3CG234300 Rh3CG302000 Rh3CG302100 Rh4DG305100 Rh5AG250900 Rh5AG272600 Rh5AG475300 Rh5BG276800 Rh5BG355700 Rh5CG308700 Rh5DG285400 Rh6BG136500 Rh6BG167900 Rh6BG220000 Rh7AG327600 Rh7AG349200 Rh7AG349300 Rh7AG349400 Rh7AG353200 Rh7CG344900 Rh7CG366500 Rh7CG366600
rosa_wichuraiana Rw1G002110 Rw2G044660 Rw3G008210 Rw4G016310 Rw4G019560 Rw5G025520 Rw5G030020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 107, 115
AcsI RAATTY 1 cut(s) 169
AcuI CTGAAG 1 cut(s) 111
AflIII ACRYGT 1 cut(s) 79
AgsI TTSAA 1 cut(s) 196
AluBI AGCT 1 cut(s) 181
AluI AGCT 1 cut(s) 181
ApoI RAATTY 1 cut(s) 169
Asp700I GAANNNNTTC 1 cut(s) 144
AspS9I GGNCC 1 cut(s) 271
AsuHPI GGTGA 1 cut(s) 28
AvaII GGWCC 1 cut(s) 271
BclI TGATCA 1 cut(s) 153
BfaI CTAG 1 cut(s) 137
Bme18I GGWCC 1 cut(s) 271
BmgT120I GGNCC 1 cut(s) 271
BmiI GGNNCC 1 cut(s) 272
BmrI ACTGGG 1 cut(s) 19
BmsI GCATC 2 cut(s) 190, 212
BmuI ACTGGG 1 cut(s) 19
Bse1I ACTGG 1 cut(s) 14
BseGI GGATG 1 cut(s) 205
BseNI ACTGG 1 cut(s) 14
Bsp143I GATC 1 cut(s) 153
BspACI CCGC 2 cut(s) 107, 115
BspLI GGNNCC 1 cut(s) 272
BsrI ACTGG 1 cut(s) 14
BssMI GATC 1 cut(s) 153
BstC8I GCNNGC 1 cut(s) 109
BstEII GGTNACC 1 cut(s) 16
BstF5I GGATG 1 cut(s) 205
BstKTI GATC 1 cut(s) 156
BstMBI GATC 1 cut(s) 153
BstNSI RCATGY 1 cut(s) 83
BstPI GGTNACC 1 cut(s) 16
BtsCI GGATG 1 cut(s) 205
BtsIMutI CAGTG 1 cut(s) 271
Cac8I GCNNGC 1 cut(s) 109
Cfr13I GGNCC 1 cut(s) 271
CviAII CATG 2 cut(s) 80, 218
CviJI RGCY 2 cut(s) 181, 235
CviKI_1 RGCY 2 cut(s) 181, 235
DpnI GATC 1 cut(s) 155
DpnII GATC 1 cut(s) 153
Eco47I GGWCC 1 cut(s) 271
Eco57I CTGAAG 1 cut(s) 111
Eco91I GGTNACC 1 cut(s) 16
EcoO65I GGTNACC 1 cut(s) 16
EcoT22I ATGCAT 1 cut(s) 205
FaeI CATG 2 cut(s) 83, 221
FaiI YATR 5 cut(s) 65, 77, 81, 219, 239
FatI CATG 2 cut(s) 79, 217
FauI CCCGC 1 cut(s) 100
FbaI TGATCA 1 cut(s) 153
FokI GGATG 1 cut(s) 212
FspBI CTAG 1 cut(s) 137
Hin1II CATG 2 cut(s) 83, 221
HindIII AAGCTT 1 cut(s) 179
HinfI GANTC 3 cut(s) 24, 214, 246
HphI GGTGA 1 cut(s) 28
Hpy188I TCNGA 1 cut(s) 91
Hpy188III TCNNGA 1 cut(s) 243
HpyAV CCTTC 1 cut(s) 134
HpyCH4V TGCA 3 cut(s) 101, 162, 203
Hsp92II CATG 2 cut(s) 83, 221
Ksp22I TGATCA 1 cut(s) 153
Kzo9I GATC 1 cut(s) 153
LpnPI CCDG 3 cut(s) 34, 148, 162
LweI GCATC 2 cut(s) 190, 212
MaeI CTAG 1 cut(s) 137
MaeIII GTNAC 2 cut(s) 16, 188
MalI GATC 1 cut(s) 155
MboI GATC 1 cut(s) 153
MboII GAAGA 1 cut(s) 104
MfeI CAATTG 1 cut(s) 157
MluCI AATT 3 cut(s) 157, 169, 277
MnlI CCTC 2 cut(s) 7, 97
Mph1103I ATGCAT 1 cut(s) 205
MroXI GAANNNNTTC 1 cut(s) 144
MseI TTAA 1 cut(s) 32
MunI CAATTG 1 cut(s) 157
NdeII GATC 1 cut(s) 153
NlaIII CATG 2 cut(s) 83, 221
NlaIV GGNNCC 1 cut(s) 272
NmuCI GTSAC 2 cut(s) 16, 188
NsiI ATGCAT 1 cut(s) 205
NspI RCATGY 1 cut(s) 83
PciI ACATGT 1 cut(s) 79
PdmI GAANNNNTTC 1 cut(s) 144
PfeI GAWTC 3 cut(s) 24, 214, 246
PscI ACATGT 1 cut(s) 79
PspEI GGTNACC 1 cut(s) 16
PspN4I GGNNCC 1 cut(s) 272
PspPI GGNCC 1 cut(s) 271
SaqAI TTAA 1 cut(s) 32
Sau3AI GATC 1 cut(s) 153
Sau96I GGNCC 1 cut(s) 271
SetI ASST 4 cut(s) 18, 145, 183, 258
SfaNI GCATC 2 cut(s) 190, 212
SinI GGWCC 1 cut(s) 271
Sse9I AATT 3 cut(s) 157, 169, 277
SsiI CCGC 2 cut(s) 107, 115
SspMI CTAG 1 cut(s) 137
TaqI TCGA 1 cut(s) 242
TasI AATT 3 cut(s) 157, 169, 277
TfiI GAWTC 3 cut(s) 24, 214, 246
Tru1I TTAA 1 cut(s) 32
Tru9I TTAA 1 cut(s) 32
TscAI CASTG 1 cut(s) 271
TseFI GTSAC 2 cut(s) 16, 188
Tsp45I GTSAC 2 cut(s) 16, 188
TspDTI ATGAA 2 cut(s) 191, 238
TspRI CASTG 1 cut(s) 271
VpaK11BI GGWCC 1 cut(s) 271
XapI RAATTY 1 cut(s) 169
XceI RCATGY 1 cut(s) 83
XmnI GAANNNNTTC 1 cut(s) 144
XspI CTAG 1 cut(s) 137
Zsp2I ATGCAT 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.