Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007967.1

Orthogroup ID

OG0000387

Physical Location & Seq

Genomic Coordinates Reverse (-)

21439 .. 23602

Gene Structure 2164 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007967.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 944 bp

gtgagactgtcgagccaggtgttaagattgccatcatctcaaaatcaggtgaaggtgtagagcaagctgctccatcagaaaaggcttctagtcagccagaacctcctaaagaaaaggaaactgccgaaaaacaagttcccaaagcagaacctgcccctgtcaaggaggtattacccaaaagtagagcaccttcttcacaaccaccacctaaacatgtggcttcggaaccagtacttcctcccaaagacagggaaagacgagttcctatgacaagactaaggaagcgggtggcaatacgcttgaaagattctcagaatacatttgctttgttaaccacatttaacgaggttgatatgactaacttgatgaagctccgttcagactataaggatgcctttgttgaaaagcacggagtgaaattgggatttatgtcgggctttgtgaaagctgctgttagtgcactcgagcagctgccagttgtcaatgctgtcattgatggcgatgatatcatatacagggattacattgatatcagtatcgcagttgggacaccaaagggtcttgttgttccagttgtccgcaatgctggtggtatgaactttgctcagatagagaaggagatcaatactctggctaaaaaggcggcagatggttccatatccattgatgagatggctggaggcacattcactatatcaaacggtggtgtatatggaagccttttgagtacaccaatcatcaaccctccacagtctgctattttgggcatgcactccatagtgaaccgtcccatggtcgttggcggcaatattgttcccaggccaatgatgtacattgctttgacatatgatcatcgtctcattgatggaagagaggctgtttacttcttgcgccgtataaaagatgttgtggaagaccctcgcagacttctccttgacgtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008270 GO:0016020 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914

KEGG Pathways

Metabolic & Signaling

ko00020 ko00310 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00310 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

2-oxoacid_dh Biotin_lipoyl

Protein Analysis

313

Amino Acids

34.14

Weight (kDa)

9.05

Isoelectric Point (pI)

50.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26910 AT4G26910 AT4G26910 AT5G55070 AT5G55070
fragaria_vesca	FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960
malus_domestica	MD03G1198100.v1.1 MD09G1110700.v1.1 MD17G1098600.v1.1
prunus_persica	Prupe.3G215800_v2.0.a1 Prupe.4G216900_v2.0.a1 Prupe.4G216900_v2.0.a1
pyrus_communis	pycom03g14960 pycom09g03320 pycom17g09400
rosa_chinensis	RchiOBHm_Chr2g0119431 RchiOBHm_Chr2g0119441 RchiOBHm_Chr2g0158941 RchiOBHm_Chr5g0040581 RchiOBHm_Chr5g0052421 RchiOBHm_Chr5g0052431
rosa_laevigata	RLG00000002270 RLG00000012296 RLG00000021125 RLG00000031115 RLG00000033989
rosa_multiflora	Rmu_co8099772.1_g000001 Rmu_co8181026.1_g000001 Rmu_co8403685.1_g000001 Rmu_sc0001893.1_g000003 Rmu_sc0004787.1_g000003 Rmu_sc0007967.1_g000007 Rmu_sc0010369.1_g000001 Rmu_ssc0000174.1_g000008
rosa_roxburghii	Rroxscaffold_1G00040090 Rroxscaffold_1G00040800 Rroxscaffold_1G00049000 Rroxscaffold_2G00090860 Rroxscaffold_2G00122640 Rroxscaffold_2G00127540 Rroxscaffold_2G00128360 Rroxscaffold_3G00249890 Rroxscaffold_4G00314140 Rroxscaffold_5G00345820 Rroxscaffold_5G00345830 Rroxscaffold_5G00371680 Rroxscaffold_7G00164980 Rroxscaffold_7G00209200
rosa_rugosa	Rorug01G0153500.1 Rorug02G0473100 Rorug02G0473200 Rorug02G0473200 Rorug03G0343200 Rorug05G0185800
rosa_samantha	Rh1AG155300 Rh1AG275400 Rh1BG123600 Rh1CG026200 Rh1CG145600 Rh2AG539600 Rh2BG510900 Rh2BG552500 Rh2CG522900 Rh2DG522600 Rh2DG522700 Rh2DG562200 Rh3CG234300 Rh3CG302000 Rh3CG302100 Rh4DG305100 Rh5AG250900 Rh5AG272600 Rh5AG475300 Rh5BG276800 Rh5BG355700 Rh5CG308700 Rh5DG285400 Rh6BG136500 Rh6BG167900 Rh6BG220000 Rh7AG327600 Rh7AG349200 Rh7AG349300 Rh7AG349400 Rh7AG353200 Rh7CG344900 Rh7CG366500 Rh7CG366600
rosa_wichuraiana	Rw1G002110 Rw2G044660 Rw3G008210 Rw4G016310 Rw4G019560 Rw5G025520 Rw5G030020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	159
AciI	CCGC	4 cut(s)	285, 579, 643, 803
AdeI	CACNNNGTG	1 cut(s)	414
AfaI	GTAC	3 cut(s)	233, 729, 832
AfiI	CCNNNNNNNGG	3 cut(s)	162, 248, 792
AflIII	ACRYGT	2 cut(s)	213, 938
AgsI	TTSAA	2 cut(s)	303, 403
AjiI	CACGTC	1 cut(s)	939
AjnI	CCWGG	2 cut(s)	15, 817
AluBI	AGCT	4 cut(s)	67, 372, 448, 471
AluI	AGCT	4 cut(s)	67, 372, 448, 471
Alw21I	GWGCWC	2 cut(s)	189, 462
Alw26I	GTCTC	1 cut(s)	862
Alw44I	GTGCAC	1 cut(s)	458
AlwNI	CAGNNNCTG	1 cut(s)	151
Ama87I	CYCGRG	1 cut(s)	463
AoxI	GGCC	1 cut(s)	820
ApaLI	GTGCAC	1 cut(s)	458
ApeKI	GCWGC	4 cut(s)	67, 448, 468, 471
AspLEI	GCGC	1 cut(s)	893
AsuHPI	GGTGA	1 cut(s)	61
AvaI	CYCGRG	1 cut(s)	463
BaeGI	GKGCMC	1 cut(s)	462
BarI	GAAGNNNNNNTAC	2 cut(s)	174, 206
BbsI	GAAGAC	1 cut(s)	920
Bbv12I	GWGCWC	2 cut(s)	189, 462
BbvI	GCAGC	4 cut(s)	54, 435, 458, 480
BccI	CCATC	6 cut(s)	40, 81, 490, 643, 666, 859
BceAI	ACGGC	1 cut(s)	878
BciT130I	CCWGG	2 cut(s)	17, 819
BclI	TGATCA	1 cut(s)	849
BcoDI	GTCTC	1 cut(s)	862
BfaI	CTAG	1 cut(s)	89
BfuAI	ACCTGC	1 cut(s)	159
BisI	GCNGC	6 cut(s)	68, 449, 469, 472, 644, 804
BlsI	GCNGC	6 cut(s)	69, 450, 470, 473, 645, 805
BmcAI	AGTACT	1 cut(s)	233
Bme1390I	CCNGG	2 cut(s)	17, 819
BmeT110I	CYCGRG	1 cut(s)	463
BmgBI	CACGTC	1 cut(s)	939
BmiI	GGNNCC	2 cut(s)	227, 654
BmrFI	CCNGG	2 cut(s)	17, 819
BmsI	GCATC	1 cut(s)	381
BpiI	GAAGAC	1 cut(s)	920
BpmI	CTGGAG	1 cut(s)	698
BsaBI	GATNNNNATC	1 cut(s)	31
BsaJI	CCNNGG	2 cut(s)	791, 817
Bsc4I	CCNNNNNNNGG	3 cut(s)	162, 248, 792
Bse1I	ACTGG	3 cut(s)	229, 475, 571
Bse3DI	GCAATG	2 cut(s)	588, 833
Bse8I	GATNNNNATC	1 cut(s)	31
BseBI	CCWGG	2 cut(s)	17, 819
BseDI	CCNNGG	2 cut(s)	791, 817
BseGI	GGATG	1 cut(s)	396
BseJI	GATNNNNATC	1 cut(s)	31
BseLI	CCNNNNNNNGG	3 cut(s)	162, 248, 792
BseMI	GCAATG	2 cut(s)	588, 833
BseMII	CTCAG	2 cut(s)	325, 619
BseNI	ACTGG	3 cut(s)	229, 475, 571
BseSI	GKGCMC	1 cut(s)	462
BseXI	GCAGC	4 cut(s)	54, 435, 458, 480
BshFI	GGCC	1 cut(s)	822
BsiHKAI	GWGCWC	2 cut(s)	189, 462
BsiHKCI	CYCGRG	1 cut(s)	463
BslFI	GGGAC	2 cut(s)	561, 773
BslI	CCNNNNNNNGG	3 cut(s)	162, 248, 792
BsmAI	GTCTC	1 cut(s)	862
BsmBI	CGTCTC	1 cut(s)	862
BsmFI	GGGAC	2 cut(s)	561, 773
BsnI	GGCC	1 cut(s)	822
BsoBI	CYCGRG	1 cut(s)	463
Bsp1286I	GDGCHC	2 cut(s)	189, 462
Bsp1407I	TGTACA	1 cut(s)	830
Bsp143I	GATC	2 cut(s)	620, 849
Bsp19I	CCATGG	1 cut(s)	791
BspACI	CCGC	4 cut(s)	285, 579, 643, 803
BspANI	GGCC	1 cut(s)	822
BspCNI	CTCAG	2 cut(s)	324, 618
BspLI	GGNNCC	2 cut(s)	227, 654
BspMI	ACCTGC	1 cut(s)	159
BsrDI	GCAATG	2 cut(s)	588, 833
BsrGI	TGTACA	1 cut(s)	830
BsrI	ACTGG	3 cut(s)	229, 475, 571
BssECI	CCNNGG	2 cut(s)	791, 817
BssMI	GATC	2 cut(s)	620, 849
BssT1I	CCWWGG	1 cut(s)	791
Bst2UI	CCWGG	2 cut(s)	17, 819
Bst4CI	ACNGT	4 cut(s)	9, 703, 752, 787
Bst6I	CTCTTC	1 cut(s)	864
BstAPI	GCANNNNNTGC	1 cut(s)	151
BstAUI	TGTACA	1 cut(s)	830
BstC8I	GCNNGC	2 cut(s)	65, 769
BstDEI	CTNAG	3 cut(s)	277, 311, 605
BstDSI	CCRYGG	1 cut(s)	791
BstF5I	GGATG	1 cut(s)	396
BstHHI	GCGC	1 cut(s)	893
BstKTI	GATC	2 cut(s)	623, 852
BstMAI	GTCTC	1 cut(s)	862
BstMBI	GATC	2 cut(s)	620, 849
BstMWI	GCNNNNNNNGC	3 cut(s)	151, 457, 640
BstNI	CCWGG	2 cut(s)	17, 819
BstNSI	RCATGY	2 cut(s)	217, 771
BstSCI	CCNGG	2 cut(s)	15, 817
BstSLI	GKGCMC	1 cut(s)	462
BstV1I	GCAGC	4 cut(s)	54, 435, 458, 480
BstV2I	GAAGAC	1 cut(s)	920
BsuRI	GGCC	1 cut(s)	822
BtgI	CCRYGG	1 cut(s)	791
BtgZI	GCGATG	1 cut(s)	515
BtrI	CACGTC	1 cut(s)	939
BtsCI	GGATG	1 cut(s)	396
BveI	ACCTGC	1 cut(s)	159
Cac8I	GCNNGC	2 cut(s)	65, 769
CaiI	CAGNNNCTG	1 cut(s)	151
CfoI	GCGC	1 cut(s)	893
Csp6I	GTAC	3 cut(s)	232, 728, 831
CspCI	CAANNNNNGTGG	2 cut(s)	570, 605
CviAII	CATG	3 cut(s)	214, 768, 792
CviQI	GTAC	3 cut(s)	232, 728, 831
DdeI	CTNAG	3 cut(s)	277, 311, 605
DpnI	GATC	2 cut(s)	622, 851
DpnII	GATC	2 cut(s)	620, 849
DraIII	CACNNNGTG	1 cut(s)	414
Eam1104I	CTCTTC	1 cut(s)	864
EarI	CTCTTC	1 cut(s)	864
Eco130I	CCWWGG	1 cut(s)	791
Eco32I	GATATC	2 cut(s)	507, 531
Eco88I	CYCGRG	1 cut(s)	463
EcoRII	CCWGG	2 cut(s)	15, 817
EcoRV	GATATC	2 cut(s)	507, 531
EcoT14I	CCWWGG	1 cut(s)	791
ErhI	CCWWGG	1 cut(s)	791
Esp3I	CGTCTC	1 cut(s)	862
FaeI	CATG	3 cut(s)	217, 771, 795
FalI	AAGNNNNNCTT	2 cut(s)	379, 411
FaqI	GGGAC	2 cut(s)	561, 773
FatI	CATG	3 cut(s)	213, 767, 791
FauI	CCCGC	1 cut(s)	278
FauNDI	CATATG	1 cut(s)	846
FbaI	TGATCA	1 cut(s)	849
Fnu4HI	GCNGC	6 cut(s)	68, 449, 469, 472, 644, 804
FokI	GGATG	1 cut(s)	403
Fsp4HI	GCNGC	6 cut(s)	68, 449, 469, 472, 644, 804
FspBI	CTAG	1 cut(s)	89
GlaI	GCGC	1 cut(s)	892
GluI	GCNGC	6 cut(s)	68, 449, 469, 472, 644, 804
GsuI	CTGGAG	1 cut(s)	698
HaeIII	GGCC	1 cut(s)	822
HhaI	GCGC	1 cut(s)	893
Hin1II	CATG	3 cut(s)	217, 771, 795
Hin6I	GCGC	1 cut(s)	891
HinP1I	GCGC	1 cut(s)	891
HincII	GTYRAC	1 cut(s)	332
HindII	GTYRAC	1 cut(s)	332
HinfI	GANTC	1 cut(s)	307
HpaI	GTTAAC	1 cut(s)	332
HphI	GGTGA	1 cut(s)	61
Hpy166II	GTNNAC	5 cut(s)	332, 460, 730, 783, 882
Hpy188I	TCNGA	5 cut(s)	78, 225, 314, 381, 608
Hpy8I	GTNNAC	5 cut(s)	332, 460, 730, 783, 882
HpyAV	CCTTC	3 cut(s)	46, 200, 609
HpyCH4III	ACNGT	4 cut(s)	9, 703, 752, 787
HpyCH4IV	ACGT	1 cut(s)	938
HpyCH4V	TGCA	2 cut(s)	460, 771
HpyF10VI	GCNNNNNNNGC	3 cut(s)	151, 457, 640
HpyF3I	CTNAG	3 cut(s)	277, 311, 605
HpySE526I	ACGT	1 cut(s)	938
Hsp92II	CATG	3 cut(s)	217, 771, 795
HspAI	GCGC	1 cut(s)	891
Ksp22I	TGATCA	1 cut(s)	849
KspAI	GTTAAC	1 cut(s)	332
Kzo9I	GATC	2 cut(s)	620, 849
LmnI	GCTCC	2 cut(s)	75, 377
Lsp1109I	GCAGC	4 cut(s)	54, 435, 458, 480
LweI	GCATC	1 cut(s)	381
MaeI	CTAG	1 cut(s)	89
MaeII	ACGT	1 cut(s)	938
MalI	GATC	2 cut(s)	622, 851
MboI	GATC	2 cut(s)	620, 849
MboII	GAAGA	3 cut(s)	185, 881, 925
MhlI	GDGCHC	2 cut(s)	189, 462
MluCI	AATT	1 cut(s)	418
MnlI	CCTC	8 cut(s)	113, 159, 248, 339, 673, 755, 867, 929
MseI	TTAA	3 cut(s)	23, 331, 341
MspA1I	CMGCKG	1 cut(s)	471
MspR9I	CCNGG	2 cut(s)	17, 819
MvaI	CCWGG	2 cut(s)	17, 819
MwoI	GCNNNNNNNGC	3 cut(s)	151, 457, 640
NcoI	CCATGG	1 cut(s)	791
NdeI	CATATG	1 cut(s)	846
NdeII	GATC	2 cut(s)	620, 849
NlaIII	CATG	3 cut(s)	217, 771, 795
NlaIV	GGNNCC	2 cut(s)	227, 654
NspI	RCATGY	2 cut(s)	217, 771
PaeI	GCATGC	1 cut(s)	771
PaeR7I	CTCGAG	1 cut(s)	463
PciI	ACATGT	1 cut(s)	213
PfeI	GAWTC	1 cut(s)	307
PkrI	GCNGC	6 cut(s)	69, 450, 470, 473, 645, 805
PscI	ACATGT	1 cut(s)	213
Psp6I	CCWGG	2 cut(s)	15, 817
PspGI	CCWGG	2 cut(s)	15, 817
PspN4I	GGNNCC	2 cut(s)	227, 654
PspXI	VCTCGAGB	1 cut(s)	463
PstNI	CAGNNNCTG	1 cut(s)	151
PvuII	CAGCTG	1 cut(s)	471
RsaI	GTAC	3 cut(s)	233, 729, 832
RsaNI	GTAC	3 cut(s)	232, 728, 831
SaqAI	TTAA	3 cut(s)	23, 331, 341
SatI	GCNGC	6 cut(s)	68, 449, 469, 472, 644, 804
Sau3AI	GATC	2 cut(s)	620, 849
ScaI	AGTACT	1 cut(s)	233
ScrFI	CCNGG	2 cut(s)	17, 819
SduI	GDGCHC	2 cut(s)	189, 462
SfaNI	GCATC	1 cut(s)	381
Sfr274I	CTCGAG	1 cut(s)	463
SlaI	CTCGAG	1 cut(s)	463
SmlI	CTYRAG	1 cut(s)	463
SmoI	CTYRAG	1 cut(s)	463
SphI	GCATGC	1 cut(s)	771
Sse9I	AATT	1 cut(s)	418
SsiI	CCGC	4 cut(s)	285, 579, 643, 803
SspI	AATATT	1 cut(s)	810
SspMI	CTAG	1 cut(s)	89
StyD4I	CCNGG	2 cut(s)	15, 817
StyI	CCWWGG	1 cut(s)	791
TaaI	ACNGT	4 cut(s)	9, 703, 752, 787
TaiI	ACGT	1 cut(s)	941
TaqI	TCGA	2 cut(s)	11, 464
TasI	AATT	1 cut(s)	418
TatI	WGTACW	3 cut(s)	231, 727, 830
TauI	GCSGC	2 cut(s)	646, 806
TfiI	GAWTC	1 cut(s)	307
Tru1I	TTAA	3 cut(s)	23, 331, 341
Tru9I	TTAA	3 cut(s)	23, 331, 341
TseI	GCWGC	4 cut(s)	67, 448, 468, 471
TspDTI	ATGAA	2 cut(s)	382, 610
TspGWI	ACGGA	2 cut(s)	364, 425
VneI	GTGCAC	1 cut(s)	458
XceI	RCATGY	2 cut(s)	217, 771
XcmI	CCANNNNNNNNNTGG	1 cut(s)	669
XhoI	CTCGAG	1 cut(s)	463
XspI	CTAG	1 cut(s)	89
ZrmI	AGTACT	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.