Rw4G016310

2-oxoacid dehydrogenases acyltransferase (catalytic domain)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000387
Physical Location & Seq
Reverse (-)
37340812 .. 37342861
2050 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G016310.1

Sequence Viewer

Length: 288 bp
ATGACTCTAATTCTCAACTGTATGGTTGCCGCCGGTGTTCAGTTCGGTTGGGCTTTGCAGCTTTCGCTCTTAACTCCCTATATACAGCTAGAAGGTATTCCTGTAATCAATTGCAGGACAAATTTGATGAAGCTTCGTTGTGACTTGAAGGATGCATCTGTTGAGAAGCATGGGGTCAAGTTGGGGCTTATGTCGAGATTCATCAAGGCTGTTGTCAGTGGGGTCCAAAATCAGCCTACTATTAATGCAGTCATTGATGGGATGATATCATATATAGAGATTACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00020 ko00310 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00310 map01100 map01110 map01120 map01130 map01200
Pfam Domains
Protein Families
2-oxoacid_dh Biotin_lipoyl

Protein Analysis

95

Amino Acids

10.42

Weight (kDa)

8.55

Isoelectric Point (pI)

29.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000387)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26910 AT4G26910 AT4G26910 AT5G55070 AT5G55070
fragaria_vesca FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960
malus_domestica MD03G1198100.v1.1 MD09G1110700.v1.1 MD17G1098600.v1.1
prunus_persica Prupe.3G215800_v2.0.a1 Prupe.4G216900_v2.0.a1 Prupe.4G216900_v2.0.a1
pyrus_communis pycom03g14960 pycom09g03320 pycom17g09400
rosa_chinensis RchiOBHm_Chr2g0119431 RchiOBHm_Chr2g0119441 RchiOBHm_Chr2g0158941 RchiOBHm_Chr5g0040581 RchiOBHm_Chr5g0052421 RchiOBHm_Chr5g0052431
rosa_laevigata RLG00000002270 RLG00000012296 RLG00000021125 RLG00000031115 RLG00000033989
rosa_multiflora Rmu_co8099772.1_g000001 Rmu_co8181026.1_g000001 Rmu_co8403685.1_g000001 Rmu_sc0001893.1_g000003 Rmu_sc0004787.1_g000003 Rmu_sc0007967.1_g000007 Rmu_sc0010369.1_g000001 Rmu_ssc0000174.1_g000008
rosa_roxburghii Rroxscaffold_1G00040090 Rroxscaffold_1G00040800 Rroxscaffold_1G00049000 Rroxscaffold_2G00090860 Rroxscaffold_2G00122640 Rroxscaffold_2G00127540 Rroxscaffold_2G00128360 Rroxscaffold_3G00249890 Rroxscaffold_4G00314140 Rroxscaffold_5G00345820 Rroxscaffold_5G00345830 Rroxscaffold_5G00371680 Rroxscaffold_7G00164980 Rroxscaffold_7G00209200
rosa_rugosa Rorug01G0153500.1 Rorug02G0473100 Rorug02G0473200 Rorug02G0473200 Rorug03G0343200 Rorug05G0185800
rosa_samantha Rh1AG155300 Rh1AG275400 Rh1BG123600 Rh1CG026200 Rh1CG145600 Rh2AG539600 Rh2BG510900 Rh2BG552500 Rh2CG522900 Rh2DG522600 Rh2DG522700 Rh2DG562200 Rh3CG234300 Rh3CG302000 Rh3CG302100 Rh4DG305100 Rh5AG250900 Rh5AG272600 Rh5AG475300 Rh5BG276800 Rh5BG355700 Rh5CG308700 Rh5DG285400 Rh6BG136500 Rh6BG167900 Rh6BG220000 Rh7AG327600 Rh7AG349200 Rh7AG349300 Rh7AG349400 Rh7AG353200 Rh7CG344900 Rh7CG366500 Rh7CG366600
rosa_wichuraiana Rw1G002110 Rw2G044660 Rw3G008210 Rw4G016310 Rw4G019560 Rw5G025520 Rw5G030020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 30
AcsI RAATTY 1 cut(s) 121
AgsI TTSAA 1 cut(s) 148
AluBI AGCT 3 cut(s) 61, 88, 133
AluI AGCT 3 cut(s) 61, 88, 133
ApeKI GCWGC 1 cut(s) 58
ApoI RAATTY 1 cut(s) 121
AseI ATTAAT 1 cut(s) 243
Asp700I GAANNNNTTC 1 cut(s) 96
AspS9I GGNCC 1 cut(s) 223
AvaII GGWCC 1 cut(s) 223
BbvI GCAGC 1 cut(s) 70
BccI CCATC 1 cut(s) 251
BfaI CTAG 1 cut(s) 89
BisI GCNGC 2 cut(s) 30, 59
BlsI GCNGC 2 cut(s) 31, 60
Bme18I GGWCC 1 cut(s) 223
BmgT120I GGNCC 1 cut(s) 223
BmiI GGNNCC 1 cut(s) 224
BmsI GCATC 2 cut(s) 142, 164
Bse118I RCCGGY 1 cut(s) 32
BseGI GGATG 2 cut(s) 157, 267
BseXI GCAGC 1 cut(s) 70
BsiSI CCGG 1 cut(s) 33
BspACI CCGC 1 cut(s) 30
BspLI GGNNCC 1 cut(s) 224
BsrFI RCCGGY 1 cut(s) 32
BssAI RCCGGY 1 cut(s) 32
Bst4CI ACNGT 1 cut(s) 20
BstF5I GGATG 2 cut(s) 157, 267
BstMWI GCNNNNNNNGC 1 cut(s) 64
BstV1I GCAGC 1 cut(s) 70
BtsCI GGATG 2 cut(s) 157, 267
BtsIMutI CAGTG 1 cut(s) 223
Cfr10I RCCGGY 1 cut(s) 32
Cfr13I GGNCC 1 cut(s) 223
CviAII CATG 1 cut(s) 170
CviJI RGCY 7 cut(s) 53, 61, 88, 133, 187, 209, 235
CviKI_1 RGCY 7 cut(s) 53, 61, 88, 133, 187, 209, 235
Eco32I GATATC 1 cut(s) 267
Eco47I GGWCC 1 cut(s) 223
EcoRV GATATC 1 cut(s) 267
EcoT22I ATGCAT 1 cut(s) 157
FaeI CATG 1 cut(s) 173
FaiI YATR 9 cut(s) 23, 81, 83, 171, 191, 271, 273, 275, 286
FatI CATG 1 cut(s) 169
Fnu4HI GCNGC 2 cut(s) 30, 59
FokI GGATG 2 cut(s) 164, 274
Fsp4HI GCNGC 2 cut(s) 30, 59
FspBI CTAG 1 cut(s) 89
GluI GCNGC 2 cut(s) 30, 59
HapII CCGG 1 cut(s) 33
Hin1II CATG 1 cut(s) 173
HindIII AAGCTT 1 cut(s) 131
HinfI GANTC 2 cut(s) 4, 198
HpaII CCGG 1 cut(s) 33
Hpy188III TCNNGA 1 cut(s) 195
HpyAV CCTTC 2 cut(s) 86, 142
HpyCH4III ACNGT 1 cut(s) 20
HpyCH4V TGCA 4 cut(s) 58, 114, 155, 248
HpyF10VI GCNNNNNNNGC 1 cut(s) 64
Hsp92II CATG 1 cut(s) 173
LpnPI CCDG 3 cut(s) 46, 100, 114
Lsp1109I GCAGC 1 cut(s) 70
LweI GCATC 2 cut(s) 142, 164
MaeI CTAG 1 cut(s) 89
MaeIII GTNAC 1 cut(s) 140
MfeI CAATTG 1 cut(s) 109
MluCI AATT 3 cut(s) 9, 109, 121
Mph1103I ATGCAT 1 cut(s) 157
MroXI GAANNNNTTC 1 cut(s) 96
MseI TTAA 2 cut(s) 71, 243
MspI CCGG 1 cut(s) 33
MunI CAATTG 1 cut(s) 109
MwoI GCNNNNNNNGC 1 cut(s) 64
NlaIII CATG 1 cut(s) 173
NlaIV GGNNCC 1 cut(s) 224
NmuCI GTSAC 1 cut(s) 140
NsiI ATGCAT 1 cut(s) 157
PdmI GAANNNNTTC 1 cut(s) 96
PfeI GAWTC 1 cut(s) 198
PkrI GCNGC 2 cut(s) 31, 60
PshBI ATTAAT 1 cut(s) 243
PspN4I GGNNCC 1 cut(s) 224
PspPI GGNCC 1 cut(s) 223
SaqAI TTAA 2 cut(s) 71, 243
SatI GCNGC 2 cut(s) 30, 59
Sau96I GGNCC 1 cut(s) 223
SetI ASST 4 cut(s) 63, 90, 97, 135
SfaNI GCATC 2 cut(s) 142, 164
SgeI CNNG 9 cut(s) 45, 101, 113, 127, 157, 182, 190, 207, 217
SgrAI CRCCGGYG 1 cut(s) 32
SinI GGWCC 1 cut(s) 223
Sse9I AATT 3 cut(s) 9, 109, 121
SsiI CCGC 1 cut(s) 30
SspMI CTAG 1 cut(s) 89
TaaI ACNGT 1 cut(s) 20
TaqI TCGA 1 cut(s) 194
TasI AATT 3 cut(s) 9, 109, 121
TauI GCSGC 1 cut(s) 32
TfiI GAWTC 1 cut(s) 198
Tru1I TTAA 2 cut(s) 71, 243
Tru9I TTAA 2 cut(s) 71, 243
TscAI CASTG 1 cut(s) 223
TseFI GTSAC 1 cut(s) 140
TseI GCWGC 1 cut(s) 58
Tsp45I GTSAC 1 cut(s) 140
TspDTI ATGAA 2 cut(s) 143, 190
TspRI CASTG 1 cut(s) 223
VpaK11BI GGWCC 1 cut(s) 223
VspI ATTAAT 1 cut(s) 243
XapI RAATTY 1 cut(s) 121
XmnI GAANNNNTTC 1 cut(s) 96
XspI CTAG 1 cut(s) 89
Zsp2I ATGCAT 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.