Rmu_sc0001893.1_g000003

Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001893.1
OG0000387
Physical Location & Seq
Reverse (-)
9281 .. 9912
632 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001893.1_g000003.1.cds

Sequence Viewer

Length: 327 bp
atgaagcgtaatgcagctgctgtcagtgggctccaaaatcagcctactattcatgcagtcattggtggggatgatatcatatatagagattacatagatataagtgtagctgtgggtactccaaagggccttgttgtgccagttatctgcaatgctgataagatgaattgtggtgagatagagaaggagatcaattcgcttgcaaagaaggcaaatgagggacgtctttcaattgatgatatggctggaggttcatttacaatatccaatggtggattttatggaagccttataagtacccccatcatcaaccctcctcaagtctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00020 ko00310 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00310 map01100 map01110 map01120 map01130 map01200
Pfam Domains
Protein Families
2-oxoacid_dh Biotin_lipoyl

Protein Analysis

108

Amino Acids

11.35

Weight (kDa)

5.17

Isoelectric Point (pI)

35.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000387)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26910 AT4G26910 AT4G26910 AT5G55070 AT5G55070
fragaria_vesca FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960
malus_domestica MD03G1198100.v1.1 MD09G1110700.v1.1 MD17G1098600.v1.1
prunus_persica Prupe.3G215800_v2.0.a1 Prupe.4G216900_v2.0.a1 Prupe.4G216900_v2.0.a1
pyrus_communis pycom03g14960 pycom09g03320 pycom17g09400
rosa_chinensis RchiOBHm_Chr2g0119431 RchiOBHm_Chr2g0119441 RchiOBHm_Chr2g0158941 RchiOBHm_Chr5g0040581 RchiOBHm_Chr5g0052421 RchiOBHm_Chr5g0052431
rosa_laevigata RLG00000002270 RLG00000012296 RLG00000021125 RLG00000031115 RLG00000033989
rosa_multiflora Rmu_co8099772.1_g000001 Rmu_co8181026.1_g000001 Rmu_co8403685.1_g000001 Rmu_sc0001893.1_g000003 Rmu_sc0004787.1_g000003 Rmu_sc0007967.1_g000007 Rmu_sc0010369.1_g000001 Rmu_ssc0000174.1_g000008
rosa_roxburghii Rroxscaffold_1G00040090 Rroxscaffold_1G00040800 Rroxscaffold_1G00049000 Rroxscaffold_2G00090860 Rroxscaffold_2G00122640 Rroxscaffold_2G00127540 Rroxscaffold_2G00128360 Rroxscaffold_3G00249890 Rroxscaffold_4G00314140 Rroxscaffold_5G00345820 Rroxscaffold_5G00345830 Rroxscaffold_5G00371680 Rroxscaffold_7G00164980 Rroxscaffold_7G00209200
rosa_rugosa Rorug01G0153500.1 Rorug02G0473100 Rorug02G0473200 Rorug02G0473200 Rorug03G0343200 Rorug05G0185800
rosa_samantha Rh1AG155300 Rh1AG275400 Rh1BG123600 Rh1CG026200 Rh1CG145600 Rh2AG539600 Rh2BG510900 Rh2BG552500 Rh2CG522900 Rh2DG522600 Rh2DG522700 Rh2DG562200 Rh3CG234300 Rh3CG302000 Rh3CG302100 Rh4DG305100 Rh5AG250900 Rh5AG272600 Rh5AG475300 Rh5BG276800 Rh5BG355700 Rh5CG308700 Rh5DG285400 Rh6BG136500 Rh6BG167900 Rh6BG220000 Rh7AG327600 Rh7AG349200 Rh7AG349300 Rh7AG349400 Rh7AG353200 Rh7CG344900 Rh7CG366500 Rh7CG366600
rosa_wichuraiana Rw1G002110 Rw2G044660 Rw3G008210 Rw4G016310 Rw4G019560 Rw5G025520 Rw5G030020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 293
AatII GACGTC 1 cut(s) 226
AcyI GRCGYC 1 cut(s) 223
AfaI GTAC 2 cut(s) 118, 298
AgsI TTSAA 1 cut(s) 231
AluBI AGCT 2 cut(s) 17, 110
AluI AGCT 2 cut(s) 17, 110
AlwNI CAGNNNCTG 1 cut(s) 20
AoxI GGCC 1 cut(s) 127
ApeKI GCWGC 2 cut(s) 14, 17
AspS9I GGNCC 1 cut(s) 127
AsuHPI GGTGA 1 cut(s) 185
BanII GRGCYC 1 cut(s) 33
BbvI GCAGC 2 cut(s) 4, 26
BccI CCATC 1 cut(s) 311
BisI GCNGC 2 cut(s) 15, 18
BlsI GCNGC 2 cut(s) 16, 19
BmgT120I GGNCC 1 cut(s) 127
BmiI GGNNCC 1 cut(s) 32
BpmI CTGGAG 1 cut(s) 267
BpuEI CTTGAG 1 cut(s) 303
BsaHI GRCGYC 1 cut(s) 223
Bse1I ACTGG 1 cut(s) 140
Bse3DI GCAATG 1 cut(s) 157
BseGI GGATG 1 cut(s) 76
BseMI GCAATG 1 cut(s) 157
BseNI ACTGG 1 cut(s) 140
BseRI GAGGAG 1 cut(s) 306
BseXI GCAGC 2 cut(s) 4, 26
BshFI GGCC 1 cut(s) 129
BslFI GGGAC 1 cut(s) 234
BsmFI GGGAC 1 cut(s) 234
BsnI GGCC 1 cut(s) 129
Bsp1286I GDGCHC 1 cut(s) 33
Bsp143I GATC 1 cut(s) 189
BspANI GGCC 1 cut(s) 129
BspLI GGNNCC 1 cut(s) 32
BsrDI GCAATG 1 cut(s) 157
BsrI ACTGG 1 cut(s) 140
BssMI GATC 1 cut(s) 189
BssNI GRCGYC 1 cut(s) 223
BstACI GRCGYC 1 cut(s) 223
BstC8I GCNNGC 1 cut(s) 201
BstF5I GGATG 1 cut(s) 76
BstKTI GATC 1 cut(s) 192
BstMBI GATC 1 cut(s) 189
BstMWI GCNNNNNNNGC 1 cut(s) 209
BstV1I GCAGC 2 cut(s) 4, 26
BsuRI GGCC 1 cut(s) 129
BtsCI GGATG 1 cut(s) 76
BtsIMutI CAGTG 1 cut(s) 31
Cac8I GCNNGC 1 cut(s) 201
CaiI CAGNNNCTG 1 cut(s) 20
Cfr13I GGNCC 1 cut(s) 127
Csp6I GTAC 2 cut(s) 117, 297
CviAII CATG 1 cut(s) 53
CviJI RGCY 7 cut(s) 17, 31, 43, 110, 129, 245, 288
CviKI_1 RGCY 7 cut(s) 17, 31, 43, 110, 129, 245, 288
CviQI GTAC 2 cut(s) 117, 297
DpnI GATC 1 cut(s) 191
DpnII GATC 1 cut(s) 189
Eco24I GRGCYC 1 cut(s) 33
Eco32I GATATC 1 cut(s) 76
EcoO109I RGGNCCY 1 cut(s) 127
EcoRV GATATC 1 cut(s) 76
EcoT38I GRGCYC 1 cut(s) 33
FaeI CATG 1 cut(s) 56
FaiI YATR 9 cut(s) 54, 80, 82, 84, 95, 101, 242, 282, 293
FaqI GGGAC 1 cut(s) 234
FatI CATG 1 cut(s) 52
Fnu4HI GCNGC 2 cut(s) 15, 18
FokI GGATG 1 cut(s) 83
FriOI GRGCYC 1 cut(s) 33
Fsp4HI GCNGC 2 cut(s) 15, 18
GluI GCNGC 2 cut(s) 15, 18
GsuI CTGGAG 1 cut(s) 267
HaeIII GGCC 1 cut(s) 129
Hin1I GRCGYC 1 cut(s) 223
Hin1II CATG 1 cut(s) 56
HphI GGTGA 1 cut(s) 185
Hpy188I TCNGA 1 cut(s) 326
HpyAV CCTTC 2 cut(s) 178, 202
HpyCH4IV ACGT 1 cut(s) 223
HpyCH4V TGCA 4 cut(s) 14, 56, 150, 203
HpyF10VI GCNNNNNNNGC 1 cut(s) 209
HpySE526I ACGT 1 cut(s) 223
Hsp92I GRCGYC 1 cut(s) 223
Hsp92II CATG 1 cut(s) 56
Kzo9I GATC 1 cut(s) 189
LmnI GCTCC 1 cut(s) 36
LpnPI CCDG 2 cut(s) 153, 231
Lsp1109I GCAGC 2 cut(s) 4, 26
MaeII ACGT 1 cut(s) 223
MalI GATC 1 cut(s) 191
MboI GATC 1 cut(s) 189
MfeI CAATTG 1 cut(s) 231
MhlI GDGCHC 1 cut(s) 33
MluCI AATT 3 cut(s) 166, 193, 231
MnlI CCTC 4 cut(s) 211, 242, 324, 327
MspA1I CMGCKG 1 cut(s) 17
MunI CAATTG 1 cut(s) 231
MwoI GCNNNNNNNGC 1 cut(s) 209
NdeII GATC 1 cut(s) 189
NlaIII CATG 1 cut(s) 56
NlaIV GGNNCC 1 cut(s) 32
PkrI GCNGC 2 cut(s) 16, 19
PsiI TTATAA 1 cut(s) 293
PspN4I GGNNCC 1 cut(s) 32
PspPI GGNCC 1 cut(s) 127
PstNI CAGNNNCTG 1 cut(s) 20
PvuII CAGCTG 1 cut(s) 17
RsaI GTAC 2 cut(s) 118, 298
RsaNI GTAC 2 cut(s) 117, 297
SatI GCNGC 2 cut(s) 15, 18
Sau3AI GATC 1 cut(s) 189
Sau96I GGNCC 1 cut(s) 127
SduI GDGCHC 1 cut(s) 33
SetI ASST 4 cut(s) 19, 112, 226, 253
SgeI CNNG 5 cut(s) 65, 143, 152, 212, 258
SmlI CTYRAG 1 cut(s) 318
SmoI CTYRAG 1 cut(s) 318
Sse9I AATT 3 cut(s) 166, 193, 231
TaiI ACGT 1 cut(s) 226
TasI AATT 3 cut(s) 166, 193, 231
TscAI CASTG 1 cut(s) 31
TseI GCWGC 2 cut(s) 14, 17
TspDTI ATGAA 4 cut(s) 17, 41, 179, 243
TspRI CASTG 1 cut(s) 31
ZraI GACGTC 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.