Prupe.3G215800_v2.0.a1

Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
21838056 .. 21842376
4321 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G215800.1

Sequence Viewer

Length: 1404 bp
ATGATTTGGGGGACTATTCGCCGTAAAGTAGCTTCGTCTCAGGTGTTGGGACAAGCGTGGAAGGTTAGGCATGGAGCGTCCACACCGAGCTGTTATCGGACTGTACCAAAAGAGGCTTTGTTTATTGGGAAAGGATTTGAGTGTGTTCAGAGCTCAAGCTACCACATTCTTTTAGGCGATCATGTTTCAAAGACAAGCAGGGAAGCTACTTCACTATATCAAACAGAATCTTTTATCCGATTGAGAAATAGATCATTTTCCTCAGACAGTGGAGACTTGGTAGAAGCTGTTGTTCCTTTCATGGGTGAATCTATTACCGATGGCACTTTGGCAACATTCCTAAAGAAACCCGGCGACAAAGTTGCAATTGACGAGCCTATAGCCCAAATTGAAACTGATAAGGTGACAATTGATGTAGTTAGTCCTCAAGCTGGTGTCATTCAAAAGTTTGTGGCTAAGGAAGGTGAGACCGTTGAGCCAGGCGTCAAGATTGCAATCATTTCAAAATCCGGTGAAGGTATAGAACAAGTTGCCCCGTCTGATGCTCAGCCAGAACCTCCTAAAGAGAAGGAAAGTGCAGAAAAGCAAGTTCCCAAAGCAGAACCTGCCCCTGTCAAGGGGACAACAGCACAACCCAAAGCTAGAGCACCTTCTCCACCACCATCACCTAAACGTGTGGCTTCAGAACCCCAGCTTCCTCCTAAGGACAGGGAAAGACGAGTTCCTATGACAAGACTTAGGAAGCGGGTGGCAACACGCTTGAAAGATTCTCAGAATACATTTGCTTTGTTAACCACATTTAACGAGGTTGACATGACTAATTTGATGAAGCTCCGTTCAGACTACAAGGACGCTTTTGTTGAAAAACATGGTGTGAAATTGGGATTTATGTCTGGCTTTGTGAAAGCTGCTGTCAGTGCACTTGAGCACTTGCCCATTGTCAATGCTGTCATTGATGGGGATGATATCATATACAGAGATTACATTGATATCAGCATTGCTGTTGGGACACCAAAGGGCCTTGTTGTTCCAGTCGTCCGCAATGCTGGTGGTATGAACTTTGCTGAGATAGAGAAGGAGATCAATACTCTGGCTAAGAAGGCAGCTGATGGTTCCATATCAATTGATGAAATGGCTGGAGGCACATTCACAATATCAAATGGTGGTGTATATGGAAGCCTTTTGAGCACACCAATCATCAACCCTCCACAGTCGGCAATTTTGGGTATGCACTCAATAGTGAACCGTCCCATGGTCGTTGGGGGTAATGTCGTACCAAGGCCAATGATGTACATTGCATTGACATACGATCACCGTCTCATTGATGGAAGAGAGGCTGTTCTTTTCTTGCGCCGTATAAAAGATGTCGTGGAAGACCCTCGCAGACTCCTCCTTGATGTGTAA

Protein Analysis

468

Amino Acids

50.83

Weight (kDa)

9.02

Isoelectric Point (pI)

48.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000387)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26910 AT4G26910 AT4G26910 AT5G55070 AT5G55070
fragaria_vesca FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960
malus_domestica MD03G1198100.v1.1 MD09G1110700.v1.1 MD17G1098600.v1.1
prunus_persica Prupe.3G215800_v2.0.a1 Prupe.4G216900_v2.0.a1 Prupe.4G216900_v2.0.a1
pyrus_communis pycom03g14960 pycom09g03320 pycom17g09400
rosa_chinensis RchiOBHm_Chr2g0119431 RchiOBHm_Chr2g0119441 RchiOBHm_Chr2g0158941 RchiOBHm_Chr5g0040581 RchiOBHm_Chr5g0052421 RchiOBHm_Chr5g0052431
rosa_laevigata RLG00000002270 RLG00000012296 RLG00000021125 RLG00000031115 RLG00000033989
rosa_multiflora Rmu_co8099772.1_g000001 Rmu_co8181026.1_g000001 Rmu_co8403685.1_g000001 Rmu_sc0001893.1_g000003 Rmu_sc0004787.1_g000003 Rmu_sc0007967.1_g000007 Rmu_sc0010369.1_g000001 Rmu_ssc0000174.1_g000008
rosa_roxburghii Rroxscaffold_1G00040090 Rroxscaffold_1G00040800 Rroxscaffold_1G00049000 Rroxscaffold_2G00090860 Rroxscaffold_2G00122640 Rroxscaffold_2G00127540 Rroxscaffold_2G00128360 Rroxscaffold_3G00249890 Rroxscaffold_4G00314140 Rroxscaffold_5G00345820 Rroxscaffold_5G00345830 Rroxscaffold_5G00371680 Rroxscaffold_7G00164980 Rroxscaffold_7G00209200
rosa_rugosa Rorug01G0153500.1 Rorug02G0473100 Rorug02G0473200 Rorug02G0473200 Rorug03G0343200 Rorug05G0185800
rosa_samantha Rh1AG155300 Rh1AG275400 Rh1BG123600 Rh1CG026200 Rh1CG145600 Rh2AG539600 Rh2BG510900 Rh2BG552500 Rh2CG522900 Rh2DG522600 Rh2DG522700 Rh2DG562200 Rh3CG234300 Rh3CG302000 Rh3CG302100 Rh4DG305100 Rh5AG250900 Rh5AG272600 Rh5AG475300 Rh5BG276800 Rh5BG355700 Rh5CG308700 Rh5DG285400 Rh6BG136500 Rh6BG167900 Rh6BG220000 Rh7AG327600 Rh7AG349200 Rh7AG349300 Rh7AG349400 Rh7AG353200 Rh7CG344900 Rh7CG366500 Rh7CG366600
rosa_wichuraiana Rw1G002110 Rw2G044660 Rw3G008210 Rw4G016310 Rw4G019560 Rw5G025520 Rw5G030020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 613
AciI CCGC 2 cut(s) 745, 1039
AcuI CTGAAG 1 cut(s) 666
AcyI GRCGYC 1 cut(s) 483
AfaI GTAC 3 cut(s) 105, 1275, 1292
AfiI CCNNNNNNNGG 5 cut(s) 302, 431, 616, 617, 1252
AflIII ACRYGT 1 cut(s) 673
AgsI TTSAA 6 cut(s) 189, 392, 443, 504, 763, 863
AjnI CCWGG 1 cut(s) 478
Alw21I GWGCWC 5 cut(s) 155, 649, 922, 930, 1190
Alw26I GTCTC 4 cut(s) 42, 267, 461, 1322
Alw44I GTGCAC 1 cut(s) 918
AlwNI CAGNNNCTG 1 cut(s) 605
AoxI GGCC 2 cut(s) 1018, 1280
ApaLI GTGCAC 1 cut(s) 918
ApeKI GCWGC 2 cut(s) 908, 1103
AspLEI GCGC 1 cut(s) 1353
AspS9I GGNCC 1 cut(s) 1018
AsuC2I CCSGG 1 cut(s) 351
AsuHPI GGTGA 6 cut(s) 317, 415, 476, 524, 657, 1304
AxyI CCTNAGG 1 cut(s) 702
BaeGI GKGCMC 1 cut(s) 922
BanII GRGCYC 1 cut(s) 155
BarI GAAGNNNNNNTAC 2 cut(s) 16, 48
BbsI GAAGAC 1 cut(s) 1380
Bbv12I GWGCWC 5 cut(s) 155, 649, 922, 930, 1190
BbvI GCAGC 2 cut(s) 895, 1115
BccI CCATC 5 cut(s) 314, 670, 950, 1103, 1319
BceAI ACGGC 2 cut(s) 6, 1338
BcgI CGANNNNNNTGC 2 cut(s) 344, 378
BciT130I CCWGG 1 cut(s) 480
BcnI CCSGG 1 cut(s) 351
BcoDI GTCTC 4 cut(s) 42, 267, 461, 1322
BfaI CTAG 1 cut(s) 642
BfmI CTRYAG 1 cut(s) 378
BfuAI ACCTGC 1 cut(s) 613
BisI GCNGC 2 cut(s) 909, 1104
BlpI GCTNAGC 1 cut(s) 546
BlsI GCNGC 2 cut(s) 910, 1105
Bme1390I CCNGG 2 cut(s) 351, 480
BmgT120I GGNCC 1 cut(s) 1018
BmiI GGNNCC 1 cut(s) 1114
BmrFI CCNGG 2 cut(s) 351, 480
BmsI GCATC 1 cut(s) 532
BpiI GAAGAC 1 cut(s) 1380
BpmI CTGGAG 1 cut(s) 1158
Bpu10I CCTNAGC 1 cut(s) 456
Bpu1102I GCTNAGC 1 cut(s) 546
BpuEI CTTGAG 3 cut(s) 139, 411, 944
BpuMI CCSGG 1 cut(s) 351
BsaBI GATNNNNATC 1 cut(s) 494
BsaHI GRCGYC 1 cut(s) 483
BsaI GGTCTC 1 cut(s) 461
BsaJI CCNNGG 2 cut(s) 1251, 1277
BsaWI WCCGGW 1 cut(s) 509
BsaXI ACNNNNNCTCC 2 cut(s) 264, 294
Bsc4I CCNNNNNNNGG 5 cut(s) 302, 431, 616, 617, 1252
Bse1I ACTGG 1 cut(s) 1031
Bse21I CCTNAGG 1 cut(s) 702
Bse3DI GCAATG 3 cut(s) 996, 1048, 1293
Bse8I GATNNNNATC 1 cut(s) 494
BseBI CCWGG 1 cut(s) 480
BseDI CCNNGG 2 cut(s) 1251, 1277
BseGI GGATG 1 cut(s) 967
BseJI GATNNNNATC 1 cut(s) 494
BseLI CCNNNNNNNGG 5 cut(s) 302, 431, 616, 617, 1252
BseMI GCAATG 3 cut(s) 996, 1048, 1293
BseMII CTCAG 5 cut(s) 53, 276, 560, 785, 1056
BseNI ACTGG 1 cut(s) 1031
BseRI GAGGAG 1 cut(s) 1379
BseSI GKGCMC 1 cut(s) 922
BseXI GCAGC 2 cut(s) 895, 1115
BseYI CCCAGC 1 cut(s) 690
BsgI GTGCAG 1 cut(s) 597
BshFI GGCC 2 cut(s) 1020, 1282
BsiHKAI GWGCWC 5 cut(s) 155, 649, 922, 930, 1190
BsiSI CCGG 2 cut(s) 351, 510
BslFI GGGAC 5 cut(s) 25, 63, 634, 1021, 1233
BslI CCNNNNNNNGG 5 cut(s) 302, 431, 616, 617, 1252
BsmAI GTCTC 4 cut(s) 42, 267, 461, 1322
BsmBI CGTCTC 2 cut(s) 42, 1322
BsmFI GGGAC 5 cut(s) 25, 63, 634, 1021, 1233
BsnI GGCC 2 cut(s) 1020, 1282
Bso31I GGTCTC 1 cut(s) 461
Bsp1286I GDGCHC 5 cut(s) 155, 649, 922, 930, 1190
Bsp1407I TGTACA 1 cut(s) 1290
Bsp143I GATC 4 cut(s) 178, 251, 1080, 1309
Bsp1720I GCTNAGC 1 cut(s) 546
Bsp19I CCATGG 1 cut(s) 1251
BspACI CCGC 2 cut(s) 745, 1039
BspANI GGCC 2 cut(s) 1020, 1282
BspCNI CTCAG 5 cut(s) 52, 275, 559, 784, 1057
BspLI GGNNCC 1 cut(s) 1114
BspMI ACCTGC 1 cut(s) 613
BspTNI GGTCTC 1 cut(s) 461
BsrDI GCAATG 3 cut(s) 996, 1048, 1293
BsrGI TGTACA 1 cut(s) 1290
BsrI ACTGG 1 cut(s) 1031
BssECI CCNNGG 2 cut(s) 1251, 1277
BssMI GATC 4 cut(s) 178, 251, 1080, 1309
BssNI GRCGYC 1 cut(s) 483
BssT1I CCWWGG 2 cut(s) 1251, 1277
Bst2UI CCWGG 1 cut(s) 480
Bst4CI ACNGT 6 cut(s) 103, 269, 472, 1212, 1247, 1316
Bst6I CTCTTC 1 cut(s) 1324
BstACI GRCGYC 1 cut(s) 483
BstAPI GCANNNNNTGC 1 cut(s) 605
BstAUI TGTACA 1 cut(s) 1290
BstDEI CTNAG 9 cut(s) 39, 262, 456, 546, 702, 737, 771, 1065, 1095
BstDSI CCRYGG 1 cut(s) 1251
BstF5I GGATG 1 cut(s) 967
BstHHI GCGC 1 cut(s) 1353
BstKTI GATC 4 cut(s) 181, 254, 1083, 1312
BstMAI GTCTC 4 cut(s) 42, 267, 461, 1322
BstMBI GATC 4 cut(s) 178, 251, 1080, 1309
BstMWI GCNNNNNNNGC 4 cut(s) 605, 917, 1100, 1185
BstNI CCWGG 1 cut(s) 480
BstSCI CCNGG 2 cut(s) 349, 478
BstSFI CTRYAG 1 cut(s) 378
BstSLI GKGCMC 1 cut(s) 922
BstV1I GCAGC 2 cut(s) 895, 1115
BstV2I GAAGAC 1 cut(s) 1380
Bsu36I CCTNAGG 1 cut(s) 702
BsuRI GGCC 2 cut(s) 1020, 1282
BtgI CCRYGG 1 cut(s) 1251
BtsCI GGATG 1 cut(s) 967
BtsIMutI CAGTG 2 cut(s) 274, 922
BveI ACCTGC 1 cut(s) 613
CaiI CAGNNNCTG 1 cut(s) 605
CfoI GCGC 1 cut(s) 1353
Cfr13I GGNCC 1 cut(s) 1018
CseI GACGC 3 cut(s) 66, 472, 860
Csp6I GTAC 3 cut(s) 104, 1274, 1291
CspCI CAANNNNNGTGG 2 cut(s) 1030, 1065
CviAII CATG 6 cut(s) 71, 182, 301, 814, 869, 1252
CviQI GTAC 3 cut(s) 104, 1274, 1291
DdeI CTNAG 9 cut(s) 39, 262, 456, 546, 702, 737, 771, 1065, 1095
DpnI GATC 4 cut(s) 180, 253, 1082, 1311
DpnII GATC 4 cut(s) 178, 251, 1080, 1309
Eam1104I CTCTTC 1 cut(s) 1324
EarI CTCTTC 1 cut(s) 1324
Ecl136II GAGCTC 1 cut(s) 153
Eco130I CCWWGG 2 cut(s) 1251, 1277
Eco24I GRGCYC 1 cut(s) 155
Eco31I GGTCTC 1 cut(s) 461
Eco32I GATATC 2 cut(s) 967, 991
Eco53kI GAGCTC 1 cut(s) 153
Eco57I CTGAAG 1 cut(s) 666
Eco81I CCTNAGG 1 cut(s) 702
EcoICRI GAGCTC 1 cut(s) 153
EcoO109I RGGNCCY 1 cut(s) 1018
EcoRII CCWGG 1 cut(s) 478
EcoRV GATATC 2 cut(s) 967, 991
EcoT14I CCWWGG 2 cut(s) 1251, 1277
EcoT38I GRGCYC 1 cut(s) 155
ErhI CCWWGG 2 cut(s) 1251, 1277
Esp3I CGTCTC 2 cut(s) 42, 1322
FaeI CATG 6 cut(s) 74, 185, 304, 817, 872, 1255
FaqI GGGAC 5 cut(s) 25, 63, 634, 1021, 1233
FatI CATG 6 cut(s) 70, 181, 300, 813, 868, 1251
FauI CCCGC 1 cut(s) 738
Fnu4HI GCNGC 2 cut(s) 909, 1104
FokI GGATG 1 cut(s) 974
FriOI GRGCYC 1 cut(s) 155
Fsp4HI GCNGC 2 cut(s) 909, 1104
FspBI CTAG 1 cut(s) 642
GlaI GCGC 1 cut(s) 1352
GluI GCNGC 2 cut(s) 909, 1104
GsaI CCCAGC 1 cut(s) 694
GsuI CTGGAG 1 cut(s) 1158
HaeIII GGCC 2 cut(s) 1020, 1282
HapII CCGG 2 cut(s) 351, 510
HgaI GACGC 3 cut(s) 66, 472, 860
HhaI GCGC 1 cut(s) 1353
Hin1I GRCGYC 1 cut(s) 483
Hin1II CATG 6 cut(s) 74, 185, 304, 817, 872, 1255
Hin6I GCGC 1 cut(s) 1351
HinP1I GCGC 1 cut(s) 1351
HincII GTYRAC 2 cut(s) 792, 811
HindII GTYRAC 2 cut(s) 792, 811
HinfI GANTC 4 cut(s) 227, 308, 767, 1386
HpaI GTTAAC 1 cut(s) 792
HpaII CCGG 2 cut(s) 351, 510
HphI GGTGA 6 cut(s) 317, 415, 476, 524, 657, 1304
Hpy166II GTNNAC 5 cut(s) 81, 792, 811, 920, 1243
Hpy188I TCNGA 8 cut(s) 99, 150, 239, 265, 541, 685, 774, 841
Hpy188III TCNNGA 1 cut(s) 487
Hpy8I GTNNAC 5 cut(s) 81, 792, 811, 920, 1243
HpyAV CCTTC 7 cut(s) 55, 455, 509, 562, 660, 1069, 1093
HpyCH4III ACNGT 6 cut(s) 103, 269, 472, 1212, 1247, 1316
HpyCH4IV ACGT 1 cut(s) 673
HpyCH4V TGCA 6 cut(s) 365, 494, 578, 920, 1231, 1298
HpyF10VI GCNNNNNNNGC 4 cut(s) 605, 917, 1100, 1185
HpyF3I CTNAG 9 cut(s) 39, 262, 456, 546, 702, 737, 771, 1065, 1095
HpySE526I ACGT 1 cut(s) 673
Hsp92I GRCGYC 1 cut(s) 483
Hsp92II CATG 6 cut(s) 74, 185, 304, 817, 872, 1255
HspAI GCGC 1 cut(s) 1351
KspAI GTTAAC 1 cut(s) 792
Kzo9I GATC 4 cut(s) 178, 251, 1080, 1309
LmnI GCTCC 2 cut(s) 74, 837
Lsp1109I GCAGC 2 cut(s) 895, 1115
LweI GCATC 1 cut(s) 532
MaeI CTAG 1 cut(s) 642
MaeII ACGT 1 cut(s) 673
MaeIII GTNAC 1 cut(s) 403
MalI GATC 4 cut(s) 180, 253, 1082, 1311
MboI GATC 4 cut(s) 178, 251, 1080, 1309
MboII GAAGA 2 cut(s) 1341, 1385
MfeI CAATTG 3 cut(s) 366, 408, 1122
MhlI GDGCHC 5 cut(s) 155, 649, 922, 930, 1190
MluCI AATT 7 cut(s) 366, 387, 408, 820, 878, 1122, 1218
MlyI GAGTC 1 cut(s) 1380
MseI TTAA 2 cut(s) 791, 801
MspA1I CMGCKG 1 cut(s) 1106
MspI CCGG 2 cut(s) 351, 510
MspR9I CCNGG 2 cut(s) 351, 480
MunI CAATTG 3 cut(s) 366, 408, 1122
MvaI CCWGG 1 cut(s) 480
MwoI GCNNNNNNNGC 4 cut(s) 605, 917, 1100, 1185
NciI CCSGG 1 cut(s) 351
NcoI CCATGG 1 cut(s) 1251
NdeII GATC 4 cut(s) 178, 251, 1080, 1309
NlaIII CATG 6 cut(s) 74, 185, 304, 817, 872, 1255
NlaIV GGNNCC 1 cut(s) 1114
NmuCI GTSAC 1 cut(s) 403
PfeI GAWTC 3 cut(s) 227, 308, 767
PkrI GCNGC 2 cut(s) 910, 1105
PleI GAGTC 1 cut(s) 1380
PpsI GAGTC 1 cut(s) 1380
Psp124BI GAGCTC 1 cut(s) 155
Psp6I CCWGG 1 cut(s) 478
PspFI CCCAGC 1 cut(s) 690
PspGI CCWGG 1 cut(s) 478
PspN4I GGNNCC 1 cut(s) 1114
PspPI GGNCC 1 cut(s) 1018
PstNI CAGNNNCTG 1 cut(s) 605
PvuII CAGCTG 1 cut(s) 1106
RsaI GTAC 3 cut(s) 105, 1275, 1292
RsaNI GTAC 3 cut(s) 104, 1274, 1291
SacI GAGCTC 1 cut(s) 155
SaqAI TTAA 2 cut(s) 791, 801
SatI GCNGC 2 cut(s) 909, 1104
Sau3AI GATC 4 cut(s) 178, 251, 1080, 1309
Sau96I GGNCC 1 cut(s) 1018
SchI GAGTC 1 cut(s) 1380
ScrFI CCNGG 2 cut(s) 351, 480
SduI GDGCHC 5 cut(s) 155, 649, 922, 930, 1190
SfaNI GCATC 1 cut(s) 532
SfcI CTRYAG 1 cut(s) 378
SmlI CTYRAG 3 cut(s) 154, 426, 923
SmoI CTYRAG 3 cut(s) 154, 426, 923
Sse9I AATT 7 cut(s) 366, 387, 408, 820, 878, 1122, 1218
SsiI CCGC 2 cut(s) 745, 1039
SspMI CTAG 1 cut(s) 642
SstI GAGCTC 1 cut(s) 155
StyD4I CCNGG 2 cut(s) 349, 478
StyI CCWWGG 2 cut(s) 1251, 1277
TaaI ACNGT 6 cut(s) 103, 269, 472, 1212, 1247, 1316
TaiI ACGT 1 cut(s) 676
TasI AATT 7 cut(s) 366, 387, 408, 820, 878, 1122, 1218
TatI WGTACW 1 cut(s) 1290
TfiI GAWTC 3 cut(s) 227, 308, 767
Tru1I TTAA 2 cut(s) 791, 801
Tru9I TTAA 2 cut(s) 791, 801
TscAI CASTG 2 cut(s) 274, 922
TseFI GTSAC 1 cut(s) 403
TseI GCWGC 2 cut(s) 908, 1103
Tsp45I GTSAC 1 cut(s) 403
TspDTI ATGAA 4 cut(s) 289, 842, 1070, 1143
TspGWI ACGGA 1 cut(s) 824
TspRI CASTG 2 cut(s) 274, 922
VneI GTGCAC 1 cut(s) 918
XspI CTAG 1 cut(s) 642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.