Rh7AG327600

Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000387
Physical Location & Seq
Reverse (-)
37506499 .. 37510136
3638 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG327600.1

Sequence Viewer

Length: 795 bp
ATGATGGGGATGGATGATGAGCCTCATCATCGGATCGACCTCAATTCCTCTTGGTCGTCTTCGTCGCCGTCGTTGTCGTCCTCTGCTAGGGTTCCGAATGGGAACGGCGATCTTCTGCTGCCGCAGAGTCTACGGGTTCCTAATCAGAACACTCTGATGACTCTAATTCTCAGCTATACGGTTGCCGCCGGTGTTCAGTTCGAGCCTGGAGACCTGGGGGAAGTTGATGAACCAATTGCTCAAATTGAAACAGATAAGGTCACGATCGATGTTGCTAGTTCTGAATCCGGTGTAATTGTGAAGATGCCTATGTTAATGCTTCAGAAATGGATTGCTAAAAGATTGAAAGATTCACAGAATACATATGCAATGCTTACAACATTCAGTGAAGTTGATATAACAAATTTGATGAAGCTTCGTTGTGACTTCAAGGATGCATCTGTTGAGAAGCATGGGGTCAAGTTGGGGCTTATGTCGAGATTCATCAAGGCTGCTTTCAGTGGGCTCCAAAATCAGCCTACTATTAATGCAGTCATTGATGGGGATGATATCATATATAGAGATTACATAGATCCAGCTGTGGGTACTCCAAAGGGCCTTGTTGTGCCAGTTATCCGCAATGATGATAAGATGAATTGTGGTGAGATTGAGAAGGAGATCAATTCGCTTGCAAAGAAGGCAAATGAGGGACGTCTTTCAATTGATGATATGGCTGGAGGTTCATTTACAATATCCAATGGTGGATTTTATGGAAGCCTTATAAGTACCCCCATCATCAACCCTCTTCAGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00020 ko00310 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00310 map01100 map01110 map01120 map01130 map01200
Pfam Domains
Protein Families
2-oxoacid_dh Biotin_lipoyl

Protein Analysis

264

Amino Acids

28.72

Weight (kDa)

4.86

Isoelectric Point (pI)

41.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2-oxoacid_dh PF00198 101 - 264 1.3e-45 2-oxoacid dehydrogenases acyltransferase (catalytic domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000387)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26910 AT4G26910 AT4G26910 AT5G55070 AT5G55070
fragaria_vesca FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960
malus_domestica MD03G1198100.v1.1 MD09G1110700.v1.1 MD17G1098600.v1.1
prunus_persica Prupe.3G215800_v2.0.a1 Prupe.4G216900_v2.0.a1 Prupe.4G216900_v2.0.a1
pyrus_communis pycom03g14960 pycom09g03320 pycom17g09400
rosa_chinensis RchiOBHm_Chr2g0119431 RchiOBHm_Chr2g0119441 RchiOBHm_Chr2g0158941 RchiOBHm_Chr5g0040581 RchiOBHm_Chr5g0052421 RchiOBHm_Chr5g0052431
rosa_laevigata RLG00000002270 RLG00000012296 RLG00000021125 RLG00000031115 RLG00000033989
rosa_multiflora Rmu_co8099772.1_g000001 Rmu_co8181026.1_g000001 Rmu_co8403685.1_g000001 Rmu_sc0001893.1_g000003 Rmu_sc0004787.1_g000003 Rmu_sc0007967.1_g000007 Rmu_sc0010369.1_g000001 Rmu_ssc0000174.1_g000008
rosa_roxburghii Rroxscaffold_1G00040090 Rroxscaffold_1G00040800 Rroxscaffold_1G00049000 Rroxscaffold_2G00090860 Rroxscaffold_2G00122640 Rroxscaffold_2G00127540 Rroxscaffold_2G00128360 Rroxscaffold_3G00249890 Rroxscaffold_4G00314140 Rroxscaffold_5G00345820 Rroxscaffold_5G00345830 Rroxscaffold_5G00371680 Rroxscaffold_7G00164980 Rroxscaffold_7G00209200
rosa_rugosa Rorug01G0153500.1 Rorug02G0473100 Rorug02G0473200 Rorug02G0473200 Rorug03G0343200 Rorug05G0185800
rosa_samantha Rh1AG155300 Rh1AG275400 Rh1BG123600 Rh1CG026200 Rh1CG145600 Rh2AG539600 Rh2BG510900 Rh2BG552500 Rh2CG522900 Rh2DG522600 Rh2DG522700 Rh2DG562200 Rh3CG234300 Rh3CG302000 Rh3CG302100 Rh4DG305100 Rh5AG250900 Rh5AG272600 Rh5AG475300 Rh5BG276800 Rh5BG355700 Rh5CG308700 Rh5DG285400 Rh6BG136500 Rh6BG167900 Rh6BG220000 Rh7AG327600 Rh7AG349200 Rh7AG349300 Rh7AG349400 Rh7AG353200 Rh7CG344900 Rh7CG366500 Rh7CG366600
rosa_wichuraiana Rw1G002110 Rw2G044660 Rw3G008210 Rw4G016310 Rw4G019560 Rw5G025520 Rw5G030020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 761
AatII GACGTC 1 cut(s) 694
AccI GTMKAC 1 cut(s) 130
AciI CCGC 3 cut(s) 122, 186, 616
AclWI GGATC 2 cut(s) 41, 566
AcsI RAATTY 1 cut(s) 403
AcuI CTGAAG 2 cut(s) 305, 770
AcyI GRCGYC 1 cut(s) 691
AfaI GTAC 2 cut(s) 586, 766
AfiI CCNNNNNNNGG 3 cut(s) 87, 581, 787
AgsI TTSAA 4 cut(s) 248, 346, 430, 699
AjnI CCWGG 2 cut(s) 205, 213
AluBI AGCT 3 cut(s) 174, 415, 578
AluI AGCT 3 cut(s) 174, 415, 578
Alw26I GTCTC 1 cut(s) 204
AlwI GGATC 2 cut(s) 41, 566
AoxI GGCC 1 cut(s) 595
ApeKI GCWGC 2 cut(s) 118, 491
ApoI RAATTY 1 cut(s) 403
AseI ATTAAT 1 cut(s) 525
AspS9I GGNCC 1 cut(s) 595
AsuHPI GGTGA 1 cut(s) 653
BanII GRGCYC 1 cut(s) 507
BbsI GAAGAC 1 cut(s) 51
BbvI GCAGC 2 cut(s) 105, 478
BccI CCATC 3 cut(s) 4, 533, 779
BceAI ACGGC 2 cut(s) 52, 121
BciT130I CCWGG 2 cut(s) 207, 215
BcoDI GTCTC 1 cut(s) 204
BfaI CTAG 2 cut(s) 87, 276
BisI GCNGC 4 cut(s) 119, 122, 186, 492
BlsI GCNGC 4 cut(s) 120, 123, 187, 493
Bme1390I CCNGG 2 cut(s) 207, 215
BmgT120I GGNCC 1 cut(s) 595
BmiI GGNNCC 3 cut(s) 93, 138, 506
BmrFI CCNGG 2 cut(s) 207, 215
BmsI GCATC 3 cut(s) 294, 424, 446
BpiI GAAGAC 1 cut(s) 51
BpmI CTGGAG 2 cut(s) 228, 735
Bsa29I ATCGAT 1 cut(s) 267
BsaHI GRCGYC 1 cut(s) 691
BsaI GGTCTC 1 cut(s) 204
BsaJI CCNNGG 1 cut(s) 214
BsaWI WCCGGW 1 cut(s) 287
Bsc4I CCNNNNNNNGG 3 cut(s) 87, 581, 787
Bse118I RCCGGY 1 cut(s) 188
Bse1I ACTGG 1 cut(s) 608
Bse3DI GCAATG 2 cut(s) 375, 625
BseBI CCWGG 2 cut(s) 207, 215
BseCI ATCGAT 1 cut(s) 267
BseDI CCNNGG 1 cut(s) 214
BseGI GGATG 4 cut(s) 15, 19, 439, 550
BseLI CCNNNNNNNGG 3 cut(s) 87, 581, 787
BseMI GCAATG 2 cut(s) 375, 625
BseMII CTCAG 1 cut(s) 184
BseNI ACTGG 1 cut(s) 608
BseXI GCAGC 2 cut(s) 105, 478
Bsh1285I CGRYCG 1 cut(s) 267
BshFI GGCC 1 cut(s) 597
BshVI ATCGAT 1 cut(s) 267
BsiEI CGRYCG 1 cut(s) 267
BsiSI CCGG 2 cut(s) 189, 288
BslFI GGGAC 1 cut(s) 702
BslI CCNNNNNNNGG 3 cut(s) 87, 581, 787
BsmAI GTCTC 1 cut(s) 204
BsmFI GGGAC 1 cut(s) 702
BsnI GGCC 1 cut(s) 597
Bso31I GGTCTC 1 cut(s) 204
Bsp1286I GDGCHC 1 cut(s) 507
Bsp143I GATC 5 cut(s) 33, 109, 264, 571, 657
BspACI CCGC 3 cut(s) 122, 186, 616
BspANI GGCC 1 cut(s) 597
BspCNI CTCAG 1 cut(s) 183
BspDI ATCGAT 1 cut(s) 267
BspLI GGNNCC 3 cut(s) 93, 138, 506
BspPI GGATC 2 cut(s) 41, 566
BspTNI GGTCTC 1 cut(s) 204
BsrDI GCAATG 2 cut(s) 375, 625
BsrFI RCCGGY 1 cut(s) 188
BsrI ACTGG 1 cut(s) 608
BssAI RCCGGY 1 cut(s) 188
BssECI CCNNGG 1 cut(s) 214
BssMI GATC 5 cut(s) 33, 109, 264, 571, 657
BssNI GRCGYC 1 cut(s) 691
Bst2UI CCWGG 2 cut(s) 207, 215
Bst4CI ACNGT 1 cut(s) 181
Bst6I CTCTTC 1 cut(s) 789
BstACI GRCGYC 1 cut(s) 691
BstC8I GCNNGC 1 cut(s) 669
BstDEI CTNAG 1 cut(s) 170
BstENI CCTNNNNNAGG 1 cut(s) 85
BstF5I GGATG 4 cut(s) 15, 19, 439, 550
BstKTI GATC 5 cut(s) 36, 112, 267, 574, 660
BstMAI GTCTC 1 cut(s) 204
BstMBI GATC 5 cut(s) 33, 109, 264, 571, 657
BstMCI CGRYCG 1 cut(s) 267
BstMWI GCNNNNNNNGC 1 cut(s) 677
BstNI CCWGG 2 cut(s) 207, 215
BstSCI CCNGG 2 cut(s) 205, 213
BstV1I GCAGC 2 cut(s) 105, 478
BstV2I GAAGAC 1 cut(s) 51
BstX2I RGATCY 1 cut(s) 571
BstYI RGATCY 1 cut(s) 571
Bsu15I ATCGAT 1 cut(s) 267
BsuRI GGCC 1 cut(s) 597
BsuTUI ATCGAT 1 cut(s) 267
BtsCI GGATG 4 cut(s) 15, 19, 439, 550
BtsIMutI CAGTG 2 cut(s) 391, 505
Cac8I GCNNGC 1 cut(s) 669
Cfr10I RCCGGY 1 cut(s) 188
Cfr13I GGNCC 1 cut(s) 595
ClaI ATCGAT 1 cut(s) 267
Csp6I GTAC 2 cut(s) 585, 765
CviAII CATG 1 cut(s) 452
CviQI GTAC 2 cut(s) 585, 765
DdeI CTNAG 1 cut(s) 170
DpnI GATC 5 cut(s) 35, 111, 266, 573, 659
DpnII GATC 5 cut(s) 33, 109, 264, 571, 657
Eam1104I CTCTTC 1 cut(s) 789
EarI CTCTTC 1 cut(s) 789
Eco24I GRGCYC 1 cut(s) 507
Eco31I GGTCTC 1 cut(s) 204
Eco32I GATATC 1 cut(s) 550
Eco57I CTGAAG 2 cut(s) 305, 770
EcoNI CCTNNNNNAGG 1 cut(s) 85
EcoO109I RGGNCCY 1 cut(s) 595
EcoRII CCWGG 2 cut(s) 205, 213
EcoRV GATATC 1 cut(s) 550
EcoT22I ATGCAT 1 cut(s) 439
EcoT38I GRGCYC 1 cut(s) 507
FaeI CATG 1 cut(s) 455
FaqI GGGAC 1 cut(s) 702
FatI CATG 1 cut(s) 451
FauNDI CATATG 1 cut(s) 364
FblI GTMKAC 1 cut(s) 130
Fnu4HI GCNGC 4 cut(s) 119, 122, 186, 492
FokI GGATG 4 cut(s) 22, 26, 446, 557
FriOI GRGCYC 1 cut(s) 507
Fsp4HI GCNGC 4 cut(s) 119, 122, 186, 492
FspBI CTAG 2 cut(s) 87, 276
GluI GCNGC 4 cut(s) 119, 122, 186, 492
GsuI CTGGAG 2 cut(s) 228, 735
HaeIII GGCC 1 cut(s) 597
HapII CCGG 2 cut(s) 189, 288
Hin1I GRCGYC 1 cut(s) 691
Hin1II CATG 1 cut(s) 455
HindIII AAGCTT 1 cut(s) 413
HinfI GANTC 5 cut(s) 127, 160, 284, 350, 480
HpaII CCGG 2 cut(s) 189, 288
HphI GGTGA 1 cut(s) 653
Hpy166II GTNNAC 1 cut(s) 131
Hpy188I TCNGA 7 cut(s) 33, 96, 147, 156, 283, 324, 794
Hpy188III TCNNGA 2 cut(s) 262, 477
Hpy8I GTNNAC 1 cut(s) 131
Hpy99I CGWCG 2 cut(s) 67, 73
HpyAV CCTTC 2 cut(s) 646, 670
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4IV ACGT 1 cut(s) 691
HpyCH4V TGCA 4 cut(s) 368, 437, 530, 671
HpyF10VI GCNNNNNNNGC 1 cut(s) 677
HpyF3I CTNAG 1 cut(s) 170
HpySE526I ACGT 1 cut(s) 691
Hsp92I GRCGYC 1 cut(s) 691
Hsp92II CATG 1 cut(s) 455
Kzo9I GATC 5 cut(s) 33, 109, 264, 571, 657
LmnI GCTCC 1 cut(s) 510
Lsp1109I GCAGC 2 cut(s) 105, 478
LweI GCATC 3 cut(s) 294, 424, 446
MaeI CTAG 2 cut(s) 87, 276
MaeII ACGT 1 cut(s) 691
MaeIII GTNAC 2 cut(s) 259, 422
MalI GATC 5 cut(s) 35, 111, 266, 573, 659
MboI GATC 5 cut(s) 33, 109, 264, 571, 657
MboII GAAGA 4 cut(s) 51, 104, 313, 776
MfeI CAATTG 2 cut(s) 234, 699
MflI RGATCY 1 cut(s) 571
MhlI GDGCHC 1 cut(s) 507
MluCI AATT 9 cut(s) 43, 165, 234, 243, 294, 403, 634, 661, 699
MlyI GAGTC 2 cut(s) 136, 154
MnlI CCTC 7 cut(s) 33, 50, 58, 91, 679, 710, 792
Mph1103I ATGCAT 1 cut(s) 439
MseI TTAA 2 cut(s) 314, 525
MslI CAYNNNNRTG 1 cut(s) 155
MspA1I CMGCKG 1 cut(s) 578
MspI CCGG 2 cut(s) 189, 288
MspR9I CCNGG 2 cut(s) 207, 215
MunI CAATTG 2 cut(s) 234, 699
MvaI CCWGG 2 cut(s) 207, 215
MwoI GCNNNNNNNGC 1 cut(s) 677
NdeI CATATG 1 cut(s) 364
NdeII GATC 5 cut(s) 33, 109, 264, 571, 657
NlaIII CATG 1 cut(s) 455
NlaIV GGNNCC 3 cut(s) 93, 138, 506
NmuCI GTSAC 2 cut(s) 259, 422
NsiI ATGCAT 1 cut(s) 439
PcsI WCGNNNNNNNCGW 1 cut(s) 68
PfeI GAWTC 3 cut(s) 284, 350, 480
PkrI GCNGC 4 cut(s) 120, 123, 187, 493
Ple19I CGATCG 1 cut(s) 267
PleI GAGTC 2 cut(s) 135, 154
PpsI GAGTC 2 cut(s) 135, 154
PshBI ATTAAT 1 cut(s) 525
PsiI TTATAA 1 cut(s) 761
Psp6I CCWGG 2 cut(s) 205, 213
PspGI CCWGG 2 cut(s) 205, 213
PspN4I GGNNCC 3 cut(s) 93, 138, 506
PspPI GGNCC 1 cut(s) 595
PsuI RGATCY 1 cut(s) 571
PvuI CGATCG 1 cut(s) 267
PvuII CAGCTG 1 cut(s) 578
RsaI GTAC 2 cut(s) 586, 766
RsaNI GTAC 2 cut(s) 585, 765
RseI CAYNNNNRTG 1 cut(s) 155
SaqAI TTAA 2 cut(s) 314, 525
SatI GCNGC 4 cut(s) 119, 122, 186, 492
Sau3AI GATC 5 cut(s) 33, 109, 264, 571, 657
Sau96I GGNCC 1 cut(s) 595
SchI GAGTC 2 cut(s) 136, 154
ScrFI CCNGG 2 cut(s) 207, 215
SduI GDGCHC 1 cut(s) 507
SetI ASST 9 cut(s) 42, 176, 216, 261, 417, 580, 694, 721, 792
SfaNI GCATC 3 cut(s) 294, 424, 446
SgrAI CRCCGGYG 1 cut(s) 188
SmiMI CAYNNNNRTG 1 cut(s) 155
Sse9I AATT 9 cut(s) 43, 165, 234, 243, 294, 403, 634, 661, 699
SsiI CCGC 3 cut(s) 122, 186, 616
SspMI CTAG 2 cut(s) 87, 276
StyD4I CCNGG 2 cut(s) 205, 213
TaaI ACNGT 1 cut(s) 181
TaiI ACGT 1 cut(s) 694
TaqI TCGA 4 cut(s) 36, 201, 267, 476
TasI AATT 9 cut(s) 43, 165, 234, 243, 294, 403, 634, 661, 699
TauI GCSGC 2 cut(s) 124, 188
TfiI GAWTC 3 cut(s) 284, 350, 480
Tru1I TTAA 2 cut(s) 314, 525
Tru9I TTAA 2 cut(s) 314, 525
TscAI CASTG 2 cut(s) 391, 505
TseFI GTSAC 2 cut(s) 259, 422
TseI GCWGC 2 cut(s) 118, 491
Tsp45I GTSAC 2 cut(s) 259, 422
TspDTI ATGAA 5 cut(s) 243, 425, 472, 647, 711
TspRI CASTG 2 cut(s) 391, 505
VspI ATTAAT 1 cut(s) 525
XagI CCTNNNNNAGG 1 cut(s) 85
XapI RAATTY 1 cut(s) 403
XmiI GTMKAC 1 cut(s) 130
XspI CTAG 2 cut(s) 87, 276
ZraI GACGTC 1 cut(s) 692
Zsp2I ATGCAT 1 cut(s) 439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.