Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8181026.1

Orthogroup ID

OG0000387

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 513

Gene Structure 513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8181026.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 175 bp

atgatttgggggactatacgccggaaagtctcttcgtctcaggtgttgggacaagcgtggaaggttaggcctgcagcctccacgccaaactcttaccggactgtgccaaaagaggctttattcaatgggagaggatttgagtgtattcagaggtcaagctaccacattgccttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008270 GO:0016020 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914

KEGG Pathways

Metabolic & Signaling

ko00020 ko00310 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00310 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

2-oxoacid_dh Biotin_lipoyl

Protein Analysis

58

Amino Acids

6.55

Weight (kDa)

10.96

Isoelectric Point (pI)

53.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26910 AT4G26910 AT4G26910 AT5G55070 AT5G55070
fragaria_vesca	FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960
malus_domestica	MD03G1198100.v1.1 MD09G1110700.v1.1 MD17G1098600.v1.1
prunus_persica	Prupe.3G215800_v2.0.a1 Prupe.4G216900_v2.0.a1 Prupe.4G216900_v2.0.a1
pyrus_communis	pycom03g14960 pycom09g03320 pycom17g09400
rosa_chinensis	RchiOBHm_Chr2g0119431 RchiOBHm_Chr2g0119441 RchiOBHm_Chr2g0158941 RchiOBHm_Chr5g0040581 RchiOBHm_Chr5g0052421 RchiOBHm_Chr5g0052431
rosa_laevigata	RLG00000002270 RLG00000012296 RLG00000021125 RLG00000031115 RLG00000033989
rosa_multiflora	Rmu_co8099772.1_g000001 Rmu_co8181026.1_g000001 Rmu_co8403685.1_g000001 Rmu_sc0001893.1_g000003 Rmu_sc0004787.1_g000003 Rmu_sc0007967.1_g000007 Rmu_sc0010369.1_g000001 Rmu_ssc0000174.1_g000008
rosa_roxburghii	Rroxscaffold_1G00040090 Rroxscaffold_1G00040800 Rroxscaffold_1G00049000 Rroxscaffold_2G00090860 Rroxscaffold_2G00122640 Rroxscaffold_2G00127540 Rroxscaffold_2G00128360 Rroxscaffold_3G00249890 Rroxscaffold_4G00314140 Rroxscaffold_5G00345820 Rroxscaffold_5G00345830 Rroxscaffold_5G00371680 Rroxscaffold_7G00164980 Rroxscaffold_7G00209200
rosa_rugosa	Rorug01G0153500.1 Rorug02G0473100 Rorug02G0473200 Rorug02G0473200 Rorug03G0343200 Rorug05G0185800
rosa_samantha	Rh1AG155300 Rh1AG275400 Rh1BG123600 Rh1CG026200 Rh1CG145600 Rh2AG539600 Rh2BG510900 Rh2BG552500 Rh2CG522900 Rh2DG522600 Rh2DG522700 Rh2DG562200 Rh3CG234300 Rh3CG302000 Rh3CG302100 Rh4DG305100 Rh5AG250900 Rh5AG272600 Rh5AG475300 Rh5BG276800 Rh5BG355700 Rh5CG308700 Rh5DG285400 Rh6BG136500 Rh6BG167900 Rh6BG220000 Rh7AG327600 Rh7AG349200 Rh7AG349300 Rh7AG349400 Rh7AG353200 Rh7CG344900 Rh7CG366500 Rh7CG366600
rosa_wichuraiana	Rw1G002110 Rw2G044660 Rw3G008210 Rw4G016310 Rw4G019560 Rw5G025520 Rw5G030020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	124
AluBI	AGCT	1 cut(s)	159
AluI	AGCT	1 cut(s)	159
Alw26I	GTCTC	2 cut(s)	34, 42
AoxI	GGCC	1 cut(s)	68
ApeKI	GCWGC	1 cut(s)	74
BbvI	GCAGC	1 cut(s)	86
BcoDI	GTCTC	2 cut(s)	34, 42
BfmI	CTRYAG	1 cut(s)	72
BisI	GCNGC	1 cut(s)	75
BlsI	GCNGC	1 cut(s)	76
BsaWI	WCCGGW	1 cut(s)	96
Bse3DI	GCAATG	1 cut(s)	165
BseMI	GCAATG	1 cut(s)	165
BseMII	CTCAG	1 cut(s)	53
BseXI	GCAGC	1 cut(s)	86
BshFI	GGCC	1 cut(s)	70
BsiSI	CCGG	2 cut(s)	22, 97
BslFI	GGGAC	2 cut(s)	25, 63
BsmAI	GTCTC	2 cut(s)	34, 42
BsmBI	CGTCTC	1 cut(s)	42
BsmFI	GGGAC	2 cut(s)	25, 63
BsnI	GGCC	1 cut(s)	70
BspANI	GGCC	1 cut(s)	70
BspCNI	CTCAG	1 cut(s)	52
BspMAI	CTGCAG	1 cut(s)	76
BsrDI	GCAATG	1 cut(s)	165
Bst4CI	ACNGT	1 cut(s)	103
Bst6I	CTCTTC	1 cut(s)	37
BstC8I	GCNNGC	1 cut(s)	72
BstDEI	CTNAG	2 cut(s)	39, 172
BstMAI	GTCTC	2 cut(s)	34, 42
BstSFI	CTRYAG	1 cut(s)	72
BstV1I	GCAGC	1 cut(s)	86
BsuRI	GGCC	1 cut(s)	70
Cac8I	GCNNGC	1 cut(s)	72
CviJI	RGCY	4 cut(s)	70, 77, 116, 159
CviKI_1	RGCY	4 cut(s)	70, 77, 116, 159
DdeI	CTNAG	2 cut(s)	39, 172
Eam1104I	CTCTTC	1 cut(s)	37
EarI	CTCTTC	1 cut(s)	37
Eco147I	AGGCCT	1 cut(s)	70
Esp3I	CGTCTC	1 cut(s)	42
FaiI	YATR	1 cut(s)	17
FaqI	GGGAC	2 cut(s)	25, 63
Fnu4HI	GCNGC	1 cut(s)	75
Fsp4HI	GCNGC	1 cut(s)	75
GluI	GCNGC	1 cut(s)	75
HaeIII	GGCC	1 cut(s)	70
HapII	CCGG	2 cut(s)	22, 97
HpaII	CCGG	2 cut(s)	22, 97
Hpy188I	TCNGA	1 cut(s)	150
HpyAV	CCTTC	1 cut(s)	55
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4V	TGCA	1 cut(s)	74
HpyF3I	CTNAG	2 cut(s)	39, 172
LpnPI	CCDG	4 cut(s)	26, 35, 84, 110
Lsp1109I	GCAGC	1 cut(s)	86
MboII	GAAGA	1 cut(s)	24
MnlI	CCTC	4 cut(s)	88, 106, 125, 144
MspI	CCGG	2 cut(s)	22, 97
PceI	AGGCCT	1 cut(s)	70
PkrI	GCNGC	1 cut(s)	76
PstI	CTGCAG	1 cut(s)	76
SatI	GCNGC	1 cut(s)	75
SetI	ASST	4 cut(s)	45, 66, 155, 161
SfcI	CTRYAG	1 cut(s)	72
SgeI	CNNG	8 cut(s)	34, 53, 65, 69, 83, 94, 109, 168
SseBI	AGGCCT	1 cut(s)	70
StuI	AGGCCT	1 cut(s)	70
TaaI	ACNGT	1 cut(s)	103
TseI	GCWGC	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.