Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0000387

Physical Location & Seq

Genomic Coordinates Forward (+)

31451471 .. 31452931

Gene Structure 1461 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG302000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGCGGGTAAGACCGACTCAGTGTTGATTCGGGTGTTGTACCGCAACCTGAAGGATACGAAAGTTGAAATGATGGGGATGGATGATGAGCCTCATCATCGGATCGATCTCAATTCCTCTAGGCCGTCTCCATCGCCGTCGTCGTTGTCCTCCGCTTGGGTTCCGAACCGGAATGGTGATCTTCCGCCGCCGCAAAGTCTACCGGTTCCTAATCAGAACACTCTGATGACTCTAATTCTCAACTGTACGGTTGCTGCCGGTGTTCAGTTCGGTTGGGCTTTGCAGCTTTCGCTCTTAACTCCCTATATACAGGGGCGACGTGGGAGACTGGGAGGTGACCAGATTCGATTTAAGCAAAGGGAGAAAGGCAGAAAACCAACGCATAAGCAAATCCATACCTGTTCCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006950 GO:0008150 GO:0008515 GO:0008643 GO:0009611 GO:0012505 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015770 GO:0015772 GO:0022857 GO:0034219 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0090406 GO:0120025

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 MFS_2

Protein Analysis

136

Amino Acids

15.18

Weight (kDa)

10.1

Isoelectric Point (pI)

53.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26910 AT4G26910 AT4G26910 AT5G55070 AT5G55070
fragaria_vesca	FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960
malus_domestica	MD03G1198100.v1.1 MD09G1110700.v1.1 MD17G1098600.v1.1
prunus_persica	Prupe.3G215800_v2.0.a1 Prupe.4G216900_v2.0.a1 Prupe.4G216900_v2.0.a1
pyrus_communis	pycom03g14960 pycom09g03320 pycom17g09400
rosa_chinensis	RchiOBHm_Chr2g0119431 RchiOBHm_Chr2g0119441 RchiOBHm_Chr2g0158941 RchiOBHm_Chr5g0040581 RchiOBHm_Chr5g0052421 RchiOBHm_Chr5g0052431
rosa_laevigata	RLG00000002270 RLG00000012296 RLG00000021125 RLG00000031115 RLG00000033989
rosa_multiflora	Rmu_co8099772.1_g000001 Rmu_co8181026.1_g000001 Rmu_co8403685.1_g000001 Rmu_sc0001893.1_g000003 Rmu_sc0004787.1_g000003 Rmu_sc0007967.1_g000007 Rmu_sc0010369.1_g000001 Rmu_ssc0000174.1_g000008
rosa_roxburghii	Rroxscaffold_1G00040090 Rroxscaffold_1G00040800 Rroxscaffold_1G00049000 Rroxscaffold_2G00090860 Rroxscaffold_2G00122640 Rroxscaffold_2G00127540 Rroxscaffold_2G00128360 Rroxscaffold_3G00249890 Rroxscaffold_4G00314140 Rroxscaffold_5G00345820 Rroxscaffold_5G00345830 Rroxscaffold_5G00371680 Rroxscaffold_7G00164980 Rroxscaffold_7G00209200
rosa_rugosa	Rorug01G0153500.1 Rorug02G0473100 Rorug02G0473200 Rorug02G0473200 Rorug03G0343200 Rorug05G0185800
rosa_samantha	Rh1AG155300 Rh1AG275400 Rh1BG123600 Rh1CG026200 Rh1CG145600 Rh2AG539600 Rh2BG510900 Rh2BG552500 Rh2CG522900 Rh2DG522600 Rh2DG522700 Rh2DG562200 Rh3CG234300 Rh3CG302000 Rh3CG302100 Rh4DG305100 Rh5AG250900 Rh5AG272600 Rh5AG475300 Rh5BG276800 Rh5BG355700 Rh5CG308700 Rh5DG285400 Rh6BG136500 Rh6BG167900 Rh6BG220000 Rh7AG327600 Rh7AG349200 Rh7AG349300 Rh7AG349400 Rh7AG353200 Rh7CG344900 Rh7CG366500 Rh7CG366600
rosa_wichuraiana	Rw1G002110 Rw2G044660 Rw3G008210 Rw4G016310 Rw4G019560 Rw5G025520 Rw5G030020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	199
AciI	CCGC	6 cut(s)	5, 43, 153, 185, 188, 191
AclWI	GGATC	1 cut(s)	110
AcuI	CTGAAG	1 cut(s)	71
AfaI	GTAC	2 cut(s)	41, 247
AfiI	CCNNNNNNNGG	1 cut(s)	156
AgeI	ACCGGT	1 cut(s)	202
AgsI	TTSAA	1 cut(s)	68
AjiI	CACGTC	1 cut(s)	320
AluBI	AGCT	1 cut(s)	286
AluI	AGCT	1 cut(s)	286
Alw26I	GTCTC	2 cut(s)	132, 319
AlwI	GGATC	1 cut(s)	110
AoxI	GGCC	1 cut(s)	122
ApeKI	GCWGC	2 cut(s)	254, 283
AsiGI	ACCGGT	1 cut(s)	202
AsuHPI	GGTGA	2 cut(s)	188, 347
BaeI	ACNNNNGTAYC	2 cut(s)	48, 81
BbvI	GCAGC	2 cut(s)	241, 295
BccI	CCATC	3 cut(s)	67, 73, 139
BceAI	ACGGC	2 cut(s)	109, 121
BciVI	GTATCC	1 cut(s)	49
BcoDI	GTCTC	2 cut(s)	132, 319
BfaI	CTAG	1 cut(s)	120
BfuI	GTATCC	1 cut(s)	49
BisI	GCNGC	4 cut(s)	188, 191, 255, 284
BlsI	GCNGC	4 cut(s)	189, 192, 256, 285
BmgBI	CACGTC	1 cut(s)	320
BmiI	GGNNCC	2 cut(s)	162, 207
BmrI	ACTGGG	1 cut(s)	338
BmuI	ACTGGG	1 cut(s)	338
Bsa29I	ATCGAT	1 cut(s)	105
BsaWI	WCCGGW	2 cut(s)	168, 202
Bsc4I	CCNNNNNNNGG	1 cut(s)	156
Bse118I	RCCGGY	2 cut(s)	202, 257
Bse1I	ACTGG	1 cut(s)	333
BseCI	ATCGAT	1 cut(s)	105
BseGI	GGATG	2 cut(s)	84, 88
BseLI	CCNNNNNNNGG	1 cut(s)	156
BseMII	CTCAG	1 cut(s)	33
BseNI	ACTGG	1 cut(s)	333
BseXI	GCAGC	2 cut(s)	241, 295
BshFI	GGCC	1 cut(s)	124
BshTI	ACCGGT	1 cut(s)	202
BshVI	ATCGAT	1 cut(s)	105
BsiSI	CCGG	3 cut(s)	169, 203, 258
BslI	CCNNNNNNNGG	1 cut(s)	156
BsmAI	GTCTC	2 cut(s)	132, 319
BsmBI	CGTCTC	1 cut(s)	132
BsnI	GGCC	1 cut(s)	124
Bsp143I	GATC	3 cut(s)	102, 106, 178
BspACI	CCGC	6 cut(s)	5, 43, 153, 185, 188, 191
BspANI	GGCC	1 cut(s)	124
BspCNI	CTCAG	1 cut(s)	32
BspDI	ATCGAT	1 cut(s)	105
BspLI	GGNNCC	2 cut(s)	162, 207
BspPI	GGATC	1 cut(s)	110
BsrFI	RCCGGY	2 cut(s)	202, 257
BsrI	ACTGG	1 cut(s)	333
BssAI	RCCGGY	2 cut(s)	202, 257
BssMI	GATC	3 cut(s)	102, 106, 178
Bst4CI	ACNGT	2 cut(s)	245, 250
BstDEI	CTNAG	1 cut(s)	19
BstEII	GGTNACC	1 cut(s)	335
BstF5I	GGATG	2 cut(s)	84, 88
BstKTI	GATC	3 cut(s)	105, 109, 181
BstMAI	GTCTC	2 cut(s)	132, 319
BstMBI	GATC	3 cut(s)	102, 106, 178
BstMWI	GCNNNNNNNGC	1 cut(s)	289
BstPI	GGTNACC	1 cut(s)	335
BstV1I	GCAGC	2 cut(s)	241, 295
Bsu15I	ATCGAT	1 cut(s)	105
BsuI	GTATCC	1 cut(s)	49
BsuRI	GGCC	1 cut(s)	124
BsuTUI	ATCGAT	1 cut(s)	105
BtgZI	GCGATG	1 cut(s)	117
BtrI	CACGTC	1 cut(s)	320
BtsCI	GGATG	2 cut(s)	84, 88
BtsIMutI	CAGTG	1 cut(s)	27
Cfr10I	RCCGGY	2 cut(s)	202, 257
ClaI	ATCGAT	1 cut(s)	105
Csp6I	GTAC	2 cut(s)	40, 246
CspAI	ACCGGT	1 cut(s)	202
CviJI	RGCY	4 cut(s)	91, 124, 278, 286
CviKI_1	RGCY	4 cut(s)	91, 124, 278, 286
CviQI	GTAC	2 cut(s)	40, 246
DdeI	CTNAG	1 cut(s)	19
DpnI	GATC	3 cut(s)	104, 108, 180
DpnII	GATC	3 cut(s)	102, 106, 178
EciI	GGCGGA	1 cut(s)	174
Eco57I	CTGAAG	1 cut(s)	71
Eco91I	GGTNACC	1 cut(s)	335
EcoO65I	GGTNACC	1 cut(s)	335
Esp3I	CGTCTC	1 cut(s)	132
FaiI	YATR	4 cut(s)	306, 308, 384, 396
FblI	GTMKAC	1 cut(s)	199
Fnu4HI	GCNGC	4 cut(s)	188, 191, 255, 284
FokI	GGATG	2 cut(s)	91, 95
Fsp4HI	GCNGC	4 cut(s)	188, 191, 255, 284
FspBI	CTAG	1 cut(s)	120
GluI	GCNGC	4 cut(s)	188, 191, 255, 284
HaeIII	GGCC	1 cut(s)	124
HapII	CCGG	3 cut(s)	169, 203, 258
HinfI	GANTC	4 cut(s)	17, 28, 229, 343
HpaII	CCGG	3 cut(s)	169, 203, 258
HphI	GGTGA	2 cut(s)	188, 347
Hpy166II	GTNNAC	1 cut(s)	200
Hpy188I	TCNGA	5 cut(s)	102, 165, 216, 225, 410
Hpy8I	GTNNAC	1 cut(s)	200
Hpy99I	CGWCG	3 cut(s)	142, 145, 321
HpyAV	CCTTC	1 cut(s)	46
HpyCH4III	ACNGT	2 cut(s)	245, 250
HpyCH4IV	ACGT	1 cut(s)	319
HpyCH4V	TGCA	1 cut(s)	283
HpyF10VI	GCNNNNNNNGC	1 cut(s)	289
HpyF3I	CTNAG	1 cut(s)	19
HpySE526I	ACGT	1 cut(s)	319
Kzo9I	GATC	3 cut(s)	102, 106, 178
LpnPI	CCDG	7 cut(s)	62, 182, 216, 271, 296, 314, 353
Lsp1109I	GCAGC	2 cut(s)	241, 295
MaeI	CTAG	1 cut(s)	120
MaeII	ACGT	1 cut(s)	319
MaeIII	GTNAC	1 cut(s)	335
MalI	GATC	3 cut(s)	104, 108, 180
MboI	GATC	3 cut(s)	102, 106, 178
MboII	GAAGA	1 cut(s)	173
MluCI	AATT	2 cut(s)	112, 234
MlyI	GAGTC	2 cut(s)	11, 223
MnlI	CCTC	4 cut(s)	102, 127, 160, 326
MseI	TTAA	2 cut(s)	296, 351
MslI	CAYNNNNRTG	1 cut(s)	224
MspI	CCGG	3 cut(s)	169, 203, 258
MwoI	GCNNNNNNNGC	1 cut(s)	289
NdeII	GATC	3 cut(s)	102, 106, 178
NlaIV	GGNNCC	2 cut(s)	162, 207
NmuCI	GTSAC	1 cut(s)	335
PcsI	WCGNNNNNNNCGW	1 cut(s)	140
PfeI	GAWTC	2 cut(s)	28, 343
PinAI	ACCGGT	1 cut(s)	202
PkrI	GCNGC	4 cut(s)	189, 192, 256, 285
PleI	GAGTC	2 cut(s)	11, 223
PpsI	GAGTC	2 cut(s)	11, 223
PspEI	GGTNACC	1 cut(s)	335
PspN4I	GGNNCC	2 cut(s)	162, 207
RsaI	GTAC	2 cut(s)	41, 247
RsaNI	GTAC	2 cut(s)	40, 246
RseI	CAYNNNNRTG	1 cut(s)	224
SaqAI	TTAA	2 cut(s)	296, 351
SatI	GCNGC	4 cut(s)	188, 191, 255, 284
Sau3AI	GATC	3 cut(s)	102, 106, 178
SchI	GAGTC	2 cut(s)	11, 223
SetI	ASST	5 cut(s)	51, 288, 322, 337, 401
SmiMI	CAYNNNNRTG	1 cut(s)	224
Sse9I	AATT	2 cut(s)	112, 234
SsiI	CCGC	6 cut(s)	5, 43, 153, 185, 188, 191
SspMI	CTAG	1 cut(s)	120
TaaI	ACNGT	2 cut(s)	245, 250
TaiI	ACGT	1 cut(s)	322
TaqI	TCGA	2 cut(s)	105, 346
TaqII	GACCGA	1 cut(s)	29
TasI	AATT	2 cut(s)	112, 234
TauI	GCSGC	2 cut(s)	190, 193
TfiI	GAWTC	2 cut(s)	28, 343
Tru1I	TTAA	2 cut(s)	296, 351
Tru9I	TTAA	2 cut(s)	296, 351
TscAI	CASTG	1 cut(s)	27
TseFI	GTSAC	1 cut(s)	335
TseI	GCWGC	2 cut(s)	254, 283
Tsp45I	GTSAC	1 cut(s)	335
TspRI	CASTG	1 cut(s)	27
XmiI	GTMKAC	1 cut(s)	199
XspI	CTAG	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.