Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000387

Physical Location & Seq

Genomic Coordinates Reverse (-)

17247779 .. 17250352

Gene Structure 2574 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012296

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGTGGGTAAGACAGACTCGGTGTTGATTCGGGTGTCGTACCGCAACCTGAAGGATACGAAAGTTGAAATGATGGGGATGGATGATGATCCTCATCATCGGATAGACCTCAATTCCTCTAGGTCGTCTCCATCGCCGTCGTCGTCGTCCTCCGCTAGGGTTCTGAACGGGAACGGCGATCTTCTACCGCCGCAGAGTCTACCGGTTCCTAATCAGAACACTCTGATGACTCTAATTCTCAGCTGTACGGTTGCCACCGGTGTTCAGTTCGGTTGGGCTTTGCAGCTTTCGCACTTAACTCTCTATATACAGCTAGAAGGTATTCCTGTGATCAATTGCAGGACAAATTTGATGAAGCTTCGTTGTGACTTCAAGGATGCATCTGTTGAGAAGCATGGGGTCAAGTTGGGGCTTATGTCGAGATTTATCAAGTTATCCACAATGCTGATAAAGATGAATTGCGGTGAGATTGAGAAGGAGATCAATTCGCTTGCAAAAAAGGCAAATGAGGGACGTCTTTCAATTGATGATATGGCTGGAGGTTCATTTACAATATCCAATGGTGGATTTTATGGAAGCCTTATAAGTACCCCCATCATCAACCCTCCTCAGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006950 GO:0008150 GO:0008515 GO:0008643 GO:0009611 GO:0012505 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015770 GO:0015772 GO:0022857 GO:0034219 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0090406 GO:0120025

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 MFS_2

Protein Analysis

206

Amino Acids

22.35

Weight (kDa)

8.69

Isoelectric Point (pI)

42.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2-oxoacid_dh	PF00198	151 - 205	1.4e-15	2-oxoacid dehydrogenases acyltransferase (catalytic domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26910 AT4G26910 AT4G26910 AT5G55070 AT5G55070
fragaria_vesca	FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960
malus_domestica	MD03G1198100.v1.1 MD09G1110700.v1.1 MD17G1098600.v1.1
prunus_persica	Prupe.3G215800_v2.0.a1 Prupe.4G216900_v2.0.a1 Prupe.4G216900_v2.0.a1
pyrus_communis	pycom03g14960 pycom09g03320 pycom17g09400
rosa_chinensis	RchiOBHm_Chr2g0119431 RchiOBHm_Chr2g0119441 RchiOBHm_Chr2g0158941 RchiOBHm_Chr5g0040581 RchiOBHm_Chr5g0052421 RchiOBHm_Chr5g0052431
rosa_laevigata	RLG00000002270 RLG00000012296 RLG00000021125 RLG00000031115 RLG00000033989
rosa_multiflora	Rmu_co8099772.1_g000001 Rmu_co8181026.1_g000001 Rmu_co8403685.1_g000001 Rmu_sc0001893.1_g000003 Rmu_sc0004787.1_g000003 Rmu_sc0007967.1_g000007 Rmu_sc0010369.1_g000001 Rmu_ssc0000174.1_g000008
rosa_roxburghii	Rroxscaffold_1G00040090 Rroxscaffold_1G00040800 Rroxscaffold_1G00049000 Rroxscaffold_2G00090860 Rroxscaffold_2G00122640 Rroxscaffold_2G00127540 Rroxscaffold_2G00128360 Rroxscaffold_3G00249890 Rroxscaffold_4G00314140 Rroxscaffold_5G00345820 Rroxscaffold_5G00345830 Rroxscaffold_5G00371680 Rroxscaffold_7G00164980 Rroxscaffold_7G00209200
rosa_rugosa	Rorug01G0153500.1 Rorug02G0473100 Rorug02G0473200 Rorug02G0473200 Rorug03G0343200 Rorug05G0185800
rosa_samantha	Rh1AG155300 Rh1AG275400 Rh1BG123600 Rh1CG026200 Rh1CG145600 Rh2AG539600 Rh2BG510900 Rh2BG552500 Rh2CG522900 Rh2DG522600 Rh2DG522700 Rh2DG562200 Rh3CG234300 Rh3CG302000 Rh3CG302100 Rh4DG305100 Rh5AG250900 Rh5AG272600 Rh5AG475300 Rh5BG276800 Rh5BG355700 Rh5CG308700 Rh5DG285400 Rh6BG136500 Rh6BG167900 Rh6BG220000 Rh7AG327600 Rh7AG349200 Rh7AG349300 Rh7AG349400 Rh7AG353200 Rh7CG344900 Rh7CG366500 Rh7CG366600
rosa_wichuraiana	Rw1G002110 Rw2G044660 Rw3G008210 Rw4G016310 Rw4G019560 Rw5G025520 Rw5G030020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	584
AatII	GACGTC	1 cut(s)	517
AccI	GTMKAC	1 cut(s)	199
AciI	CCGC	5 cut(s)	43, 153, 188, 191, 462
AclWI	GGATC	1 cut(s)	83
AcsI	RAATTY	1 cut(s)	346
AcuI	CTGAAG	1 cut(s)	71
AcyI	GRCGYC	1 cut(s)	514
AfaI	GTAC	3 cut(s)	41, 247, 589
AfiI	CCNNNNNNNGG	2 cut(s)	156, 610
AgeI	ACCGGT	2 cut(s)	202, 257
AgsI	TTSAA	3 cut(s)	68, 373, 522
AluBI	AGCT	4 cut(s)	243, 286, 313, 358
AluI	AGCT	4 cut(s)	243, 286, 313, 358
Alw26I	GTCTC	1 cut(s)	132
AlwI	GGATC	1 cut(s)	83
ApeKI	GCWGC	1 cut(s)	283
ApoI	RAATTY	1 cut(s)	346
AsiGI	ACCGGT	2 cut(s)	202, 257
Asp700I	GAANNNNTTC	1 cut(s)	321
AsuHPI	GGTGA	1 cut(s)	476
AxyI	CCTNAGG	1 cut(s)	609
BaeI	ACNNNNGTAYC	2 cut(s)	48, 81
BbvI	GCAGC	1 cut(s)	295
BccI	CCATC	4 cut(s)	67, 73, 139, 602
BceAI	ACGGC	2 cut(s)	121, 190
BciVI	GTATCC	1 cut(s)	49
BclI	TGATCA	1 cut(s)	330
BcoDI	GTCTC	1 cut(s)	132
BfaI	CTAG	3 cut(s)	120, 156, 314
BfuI	GTATCC	1 cut(s)	49
BisI	GCNGC	2 cut(s)	191, 284
BlsI	GCNGC	2 cut(s)	192, 285
BmiI	GGNNCC	1 cut(s)	207
BmsI	GCATC	2 cut(s)	367, 389
BpmI	CTGGAG	1 cut(s)	558
BsaBI	GATNNNNATC	2 cut(s)	87, 93
BsaHI	GRCGYC	1 cut(s)	514
BsaWI	WCCGGW	2 cut(s)	202, 257
Bsc4I	CCNNNNNNNGG	2 cut(s)	156, 610
Bse118I	RCCGGY	2 cut(s)	202, 257
Bse21I	CCTNAGG	1 cut(s)	609
Bse8I	GATNNNNATC	2 cut(s)	87, 93
BseGI	GGATG	3 cut(s)	84, 88, 382
BseJI	GATNNNNATC	2 cut(s)	87, 93
BseLI	CCNNNNNNNGG	2 cut(s)	156, 610
BseMII	CTCAG	1 cut(s)	253
BseRI	GAGGAG	1 cut(s)	597
BseXI	GCAGC	1 cut(s)	295
BshTI	ACCGGT	2 cut(s)	202, 257
BsiSI	CCGG	2 cut(s)	203, 258
BslFI	GGGAC	1 cut(s)	525
BslI	CCNNNNNNNGG	2 cut(s)	156, 610
BsmAI	GTCTC	1 cut(s)	132
BsmBI	CGTCTC	1 cut(s)	132
BsmFI	GGGAC	1 cut(s)	525
Bsp143I	GATC	4 cut(s)	88, 178, 330, 480
BspACI	CCGC	5 cut(s)	43, 153, 188, 191, 462
BspCNI	CTCAG	1 cut(s)	252
BspLI	GGNNCC	1 cut(s)	207
BspPI	GGATC	1 cut(s)	83
BsrFI	RCCGGY	2 cut(s)	202, 257
BssAI	RCCGGY	2 cut(s)	202, 257
BssMI	GATC	4 cut(s)	88, 178, 330, 480
BssNI	GRCGYC	1 cut(s)	514
Bst4CI	ACNGT	1 cut(s)	250
BstACI	GRCGYC	1 cut(s)	514
BstC8I	GCNNGC	1 cut(s)	492
BstDEI	CTNAG	2 cut(s)	239, 609
BstENI	CCTNNNNNAGG	1 cut(s)	154
BstF5I	GGATG	3 cut(s)	84, 88, 382
BstKTI	GATC	4 cut(s)	91, 181, 333, 483
BstMAI	GTCTC	1 cut(s)	132
BstMBI	GATC	4 cut(s)	88, 178, 330, 480
BstMWI	GCNNNNNNNGC	2 cut(s)	289, 500
BstV1I	GCAGC	1 cut(s)	295
Bsu36I	CCTNAGG	1 cut(s)	609
BsuI	GTATCC	1 cut(s)	49
BtgZI	GCGATG	1 cut(s)	117
BtsCI	GGATG	3 cut(s)	84, 88, 382
Cac8I	GCNNGC	1 cut(s)	492
Cfr10I	RCCGGY	2 cut(s)	202, 257
Csp6I	GTAC	3 cut(s)	40, 246, 588
CspAI	ACCGGT	2 cut(s)	202, 257
CviAII	CATG	1 cut(s)	395
CviJI	RGCY	8 cut(s)	243, 278, 286, 313, 358, 412, 536, 579
CviKI_1	RGCY	8 cut(s)	243, 278, 286, 313, 358, 412, 536, 579
CviQI	GTAC	3 cut(s)	40, 246, 588
DdeI	CTNAG	2 cut(s)	239, 609
DpnI	GATC	4 cut(s)	90, 180, 332, 482
DpnII	GATC	4 cut(s)	88, 178, 330, 480
Eco57I	CTGAAG	1 cut(s)	71
Eco81I	CCTNAGG	1 cut(s)	609
EcoNI	CCTNNNNNAGG	1 cut(s)	154
EcoT22I	ATGCAT	1 cut(s)	382
Esp3I	CGTCTC	1 cut(s)	132
FaeI	CATG	1 cut(s)	398
FaiI	YATR	7 cut(s)	306, 308, 396, 416, 533, 573, 584
FaqI	GGGAC	1 cut(s)	525
FatI	CATG	1 cut(s)	394
FbaI	TGATCA	1 cut(s)	330
FblI	GTMKAC	1 cut(s)	199
Fnu4HI	GCNGC	2 cut(s)	191, 284
FokI	GGATG	3 cut(s)	91, 95, 389
Fsp4HI	GCNGC	2 cut(s)	191, 284
FspBI	CTAG	3 cut(s)	120, 156, 314
GluI	GCNGC	2 cut(s)	191, 284
GsuI	CTGGAG	1 cut(s)	558
HapII	CCGG	2 cut(s)	203, 258
Hin1I	GRCGYC	1 cut(s)	514
Hin1II	CATG	1 cut(s)	398
HindIII	AAGCTT	1 cut(s)	356
HinfI	GANTC	4 cut(s)	17, 28, 196, 229
HpaII	CCGG	2 cut(s)	203, 258
HphI	GGTGA	1 cut(s)	476
Hpy166II	GTNNAC	1 cut(s)	200
Hpy188I	TCNGA	5 cut(s)	102, 165, 216, 225, 617
Hpy188III	TCNNGA	1 cut(s)	420
Hpy8I	GTNNAC	1 cut(s)	200
Hpy99I	CGWCG	3 cut(s)	142, 145, 148
HpyAV	CCTTC	3 cut(s)	46, 311, 469
HpyCH4III	ACNGT	1 cut(s)	250
HpyCH4IV	ACGT	1 cut(s)	514
HpyCH4V	TGCA	4 cut(s)	283, 339, 380, 494
HpyF10VI	GCNNNNNNNGC	2 cut(s)	289, 500
HpyF3I	CTNAG	2 cut(s)	239, 609
HpySE526I	ACGT	1 cut(s)	514
Hsp92I	GRCGYC	1 cut(s)	514
Hsp92II	CATG	1 cut(s)	398
Ksp22I	TGATCA	1 cut(s)	330
Kzo9I	GATC	4 cut(s)	88, 178, 330, 480
LpnPI	CCDG	7 cut(s)	62, 216, 271, 325, 339, 522, 596
Lsp1109I	GCAGC	1 cut(s)	295
LweI	GCATC	2 cut(s)	367, 389
MaeI	CTAG	3 cut(s)	120, 156, 314
MaeII	ACGT	1 cut(s)	514
MaeIII	GTNAC	1 cut(s)	365
MalI	GATC	4 cut(s)	90, 180, 332, 482
MboI	GATC	4 cut(s)	88, 178, 330, 480
MboII	GAAGA	1 cut(s)	173
MfeI	CAATTG	2 cut(s)	334, 522
MluCI	AATT	7 cut(s)	112, 234, 334, 346, 457, 484, 522
MlyI	GAGTC	3 cut(s)	11, 205, 223
MnlI	CCTC	8 cut(s)	102, 119, 127, 160, 502, 533, 615, 618
Mph1103I	ATGCAT	1 cut(s)	382
MroXI	GAANNNNTTC	1 cut(s)	321
MseI	TTAA	1 cut(s)	296
MslI	CAYNNNNRTG	1 cut(s)	224
MspA1I	CMGCKG	1 cut(s)	243
MspI	CCGG	2 cut(s)	203, 258
MunI	CAATTG	2 cut(s)	334, 522
MwoI	GCNNNNNNNGC	2 cut(s)	289, 500
NdeII	GATC	4 cut(s)	88, 178, 330, 480
NlaIII	CATG	1 cut(s)	398
NlaIV	GGNNCC	1 cut(s)	207
NmuCI	GTSAC	1 cut(s)	365
NsiI	ATGCAT	1 cut(s)	382
PcsI	WCGNNNNNNNCGW	2 cut(s)	140, 174
PdmI	GAANNNNTTC	1 cut(s)	321
PfeI	GAWTC	1 cut(s)	28
PinAI	ACCGGT	2 cut(s)	202, 257
PkrI	GCNGC	2 cut(s)	192, 285
PleI	GAGTC	3 cut(s)	11, 204, 223
PpsI	GAGTC	3 cut(s)	11, 204, 223
PsiI	TTATAA	1 cut(s)	584
PspN4I	GGNNCC	1 cut(s)	207
PvuII	CAGCTG	1 cut(s)	243
RsaI	GTAC	3 cut(s)	41, 247, 589
RsaNI	GTAC	3 cut(s)	40, 246, 588
RseI	CAYNNNNRTG	1 cut(s)	224
SaqAI	TTAA	1 cut(s)	296
SatI	GCNGC	2 cut(s)	191, 284
Sau3AI	GATC	4 cut(s)	88, 178, 330, 480
SchI	GAGTC	3 cut(s)	11, 205, 223
SfaNI	GCATC	2 cut(s)	367, 389
SgrAI	CRCCGGYG	1 cut(s)	257
SmiMI	CAYNNNNRTG	1 cut(s)	224
Sse9I	AATT	7 cut(s)	112, 234, 334, 346, 457, 484, 522
SsiI	CCGC	5 cut(s)	43, 153, 188, 191, 462
SspMI	CTAG	3 cut(s)	120, 156, 314
TaaI	ACNGT	1 cut(s)	250
TaiI	ACGT	1 cut(s)	517
TaqI	TCGA	1 cut(s)	419
TasI	AATT	7 cut(s)	112, 234, 334, 346, 457, 484, 522
TauI	GCSGC	1 cut(s)	193
TfiI	GAWTC	1 cut(s)	28
Tru1I	TTAA	1 cut(s)	296
Tru9I	TTAA	1 cut(s)	296
TseFI	GTSAC	1 cut(s)	365
TseI	GCWGC	1 cut(s)	283
Tsp45I	GTSAC	1 cut(s)	365
TspDTI	ATGAA	3 cut(s)	368, 470, 534
XagI	CCTNNNNNAGG	1 cut(s)	154
XapI	RAATTY	1 cut(s)	346
XmiI	GTMKAC	1 cut(s)	199
XmnI	GAANNNNTTC	1 cut(s)	321
XspI	CTAG	3 cut(s)	120, 156, 314
ZraI	GACGTC	1 cut(s)	515
Zsp2I	ATGCAT	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.