Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000387

Physical Location & Seq

Genomic Coordinates Forward (+)

54283512 .. 54284770

Gene Structure 1259 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32982

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGCGGGTAAGACCGACTCGGTGTCGTACTGTAACCTGAAGGATACGAAAGTTGAAATGATGGGGATGGATGCTGAGCCTCATCATCGGATCGACCTCAATTCCTCTAGGCTGTCTCCATCGCAGTCGTCGTCGTCCTTTGCTAGGGTTCCGAACGGGAACTACGATCTTCGGCCGCCGCAGAGTCTACCGGTTCCTAATCAGAACACTCTGCTGACTCTAATTCTCAGCTGTACGGTTGCCGCCGGTGTTCAGTTCGGTTGGGCTTTGCGGCTTTCGCTCTTAACTCCCTATATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006950 GO:0008150 GO:0008515 GO:0008643 GO:0009611 GO:0012505 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015770 GO:0015772 GO:0022857 GO:0034219 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0090406 GO:0120025

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 MFS_2

Protein Analysis

99

Amino Acids

10.82

Weight (kDa)

7.82

Isoelectric Point (pI)

60.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26910 AT4G26910 AT4G26910 AT5G55070 AT5G55070
fragaria_vesca	FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960
malus_domestica	MD03G1198100.v1.1 MD09G1110700.v1.1 MD17G1098600.v1.1
prunus_persica	Prupe.3G215800_v2.0.a1 Prupe.4G216900_v2.0.a1 Prupe.4G216900_v2.0.a1
pyrus_communis	pycom03g14960 pycom09g03320 pycom17g09400
rosa_chinensis	RchiOBHm_Chr2g0119431 RchiOBHm_Chr2g0119441 RchiOBHm_Chr2g0158941 RchiOBHm_Chr5g0040581 RchiOBHm_Chr5g0052421 RchiOBHm_Chr5g0052431
rosa_laevigata	RLG00000002270 RLG00000012296 RLG00000021125 RLG00000031115 RLG00000033989
rosa_multiflora	Rmu_co8099772.1_g000001 Rmu_co8181026.1_g000001 Rmu_co8403685.1_g000001 Rmu_sc0001893.1_g000003 Rmu_sc0004787.1_g000003 Rmu_sc0007967.1_g000007 Rmu_sc0010369.1_g000001 Rmu_ssc0000174.1_g000008
rosa_roxburghii	Rroxscaffold_1G00040090 Rroxscaffold_1G00040800 Rroxscaffold_1G00049000 Rroxscaffold_2G00090860 Rroxscaffold_2G00122640 Rroxscaffold_2G00127540 Rroxscaffold_2G00128360 Rroxscaffold_3G00249890 Rroxscaffold_4G00314140 Rroxscaffold_5G00345820 Rroxscaffold_5G00345830 Rroxscaffold_5G00371680 Rroxscaffold_7G00164980 Rroxscaffold_7G00209200
rosa_rugosa	Rorug01G0153500.1 Rorug02G0473100 Rorug02G0473200 Rorug02G0473200 Rorug03G0343200 Rorug05G0185800
rosa_samantha	Rh1AG155300 Rh1AG275400 Rh1BG123600 Rh1CG026200 Rh1CG145600 Rh2AG539600 Rh2BG510900 Rh2BG552500 Rh2CG522900 Rh2DG522600 Rh2DG522700 Rh2DG562200 Rh3CG234300 Rh3CG302000 Rh3CG302100 Rh4DG305100 Rh5AG250900 Rh5AG272600 Rh5AG475300 Rh5BG276800 Rh5BG355700 Rh5CG308700 Rh5DG285400 Rh6BG136500 Rh6BG167900 Rh6BG220000 Rh7AG327600 Rh7AG349200 Rh7AG349300 Rh7AG349400 Rh7AG353200 Rh7CG344900 Rh7CG366500 Rh7CG366600
rosa_wichuraiana	Rw1G002110 Rw2G044660 Rw3G008210 Rw4G016310 Rw4G019560 Rw5G025520 Rw5G030020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	187
AciI	CCGC	5 cut(s)	5, 176, 179, 243, 271
AclWI	GGATC	1 cut(s)	98
AcoI	YGGCCR	1 cut(s)	173
AcuI	CTGAAG	1 cut(s)	59
AfaI	GTAC	2 cut(s)	29, 235
AfiI	CCNNNNNNNGG	1 cut(s)	144
AgeI	ACCGGT	1 cut(s)	190
AgsI	TTSAA	1 cut(s)	56
AhdI	GACNNNNNGTC	1 cut(s)	22
AluBI	AGCT	1 cut(s)	231
AluI	AGCT	1 cut(s)	231
Alw26I	GTCTC	1 cut(s)	120
AlwI	GGATC	1 cut(s)	98
AoxI	GGCC	1 cut(s)	173
AsiGI	ACCGGT	1 cut(s)	190
BaeI	ACNNNNGTAYC	2 cut(s)	36, 69
BccI	CCATC	3 cut(s)	55, 61, 127
BciVI	GTATCC	1 cut(s)	37
BcoDI	GTCTC	1 cut(s)	120
BfaI	CTAG	2 cut(s)	108, 144
BfuI	GTATCC	1 cut(s)	37
BisI	GCNGC	4 cut(s)	176, 179, 243, 272
BlpI	GCTNAGC	1 cut(s)	75
BlsI	GCNGC	4 cut(s)	177, 180, 244, 273
BmeRI	GACNNNNNGTC	1 cut(s)	22
BmiI	GGNNCC	2 cut(s)	150, 195
BmsI	GCATC	1 cut(s)	61
Bpu1102I	GCTNAGC	1 cut(s)	75
BsaWI	WCCGGW	1 cut(s)	190
Bsc4I	CCNNNNNNNGG	1 cut(s)	144
Bse118I	RCCGGY	2 cut(s)	190, 245
BseGI	GGATG	2 cut(s)	72, 76
BseLI	CCNNNNNNNGG	1 cut(s)	144
BseMII	CTCAG	2 cut(s)	66, 241
BseX3I	CGGCCG	1 cut(s)	173
Bsh1285I	CGRYCG	1 cut(s)	176
BshFI	GGCC	1 cut(s)	175
BshTI	ACCGGT	1 cut(s)	190
BsiEI	CGRYCG	1 cut(s)	176
BsiSI	CCGG	2 cut(s)	191, 246
BslI	CCNNNNNNNGG	1 cut(s)	144
BsmAI	GTCTC	1 cut(s)	120
BsnI	GGCC	1 cut(s)	175
Bsp143I	GATC	2 cut(s)	90, 166
Bsp1720I	GCTNAGC	1 cut(s)	75
BspACI	CCGC	5 cut(s)	5, 176, 179, 243, 271
BspANI	GGCC	1 cut(s)	175
BspCNI	CTCAG	2 cut(s)	67, 240
BspLI	GGNNCC	2 cut(s)	150, 195
BspPI	GGATC	1 cut(s)	98
BsrFI	RCCGGY	2 cut(s)	190, 245
BssAI	RCCGGY	2 cut(s)	190, 245
BssMI	GATC	2 cut(s)	90, 166
Bst4CI	ACNGT	2 cut(s)	32, 238
BstDEI	CTNAG	2 cut(s)	75, 227
BstENI	CCTNNNNNAGG	1 cut(s)	142
BstF5I	GGATG	2 cut(s)	72, 76
BstKTI	GATC	2 cut(s)	93, 169
BstMAI	GTCTC	1 cut(s)	120
BstMBI	GATC	2 cut(s)	90, 166
BstMCI	CGRYCG	1 cut(s)	176
BstMWI	GCNNNNNNNGC	1 cut(s)	277
BstZI	CGGCCG	1 cut(s)	173
BsuI	GTATCC	1 cut(s)	37
BsuRI	GGCC	1 cut(s)	175
BtgZI	GCGATG	1 cut(s)	105
BtsCI	GGATG	2 cut(s)	72, 76
Cfr10I	RCCGGY	2 cut(s)	190, 245
Csp6I	GTAC	2 cut(s)	28, 234
CspAI	ACCGGT	1 cut(s)	190
CviJI	RGCY	6 cut(s)	79, 112, 175, 231, 266, 274
CviKI_1	RGCY	6 cut(s)	79, 112, 175, 231, 266, 274
CviQI	GTAC	2 cut(s)	28, 234
DdeI	CTNAG	2 cut(s)	75, 227
DpnI	GATC	2 cut(s)	92, 168
DpnII	GATC	2 cut(s)	90, 166
DriI	GACNNNNNGTC	1 cut(s)	22
EaeI	YGGCCR	1 cut(s)	173
EagI	CGGCCG	1 cut(s)	173
Eam1105I	GACNNNNNGTC	1 cut(s)	22
EclXI	CGGCCG	1 cut(s)	173
Eco52I	CGGCCG	1 cut(s)	173
Eco57I	CTGAAG	1 cut(s)	59
EcoNI	CCTNNNNNAGG	1 cut(s)	142
FaiI	YATR	3 cut(s)	294, 296, 298
FblI	GTMKAC	1 cut(s)	187
Fnu4HI	GCNGC	4 cut(s)	176, 179, 243, 272
FokI	GGATG	2 cut(s)	79, 83
Fsp4HI	GCNGC	4 cut(s)	176, 179, 243, 272
FspBI	CTAG	2 cut(s)	108, 144
GluI	GCNGC	4 cut(s)	176, 179, 243, 272
HaeIII	GGCC	1 cut(s)	175
HapII	CCGG	2 cut(s)	191, 246
HinfI	GANTC	3 cut(s)	17, 184, 217
HpaII	CCGG	2 cut(s)	191, 246
Hpy166II	GTNNAC	1 cut(s)	188
Hpy188I	TCNGA	3 cut(s)	90, 153, 204
Hpy8I	GTNNAC	1 cut(s)	188
Hpy99I	CGWCG	2 cut(s)	133, 136
HpyAV	CCTTC	1 cut(s)	34
HpyCH4III	ACNGT	2 cut(s)	32, 238
HpyF10VI	GCNNNNNNNGC	1 cut(s)	277
HpyF3I	CTNAG	2 cut(s)	75, 227
Kzo9I	GATC	2 cut(s)	90, 166
LpnPI	CCDG	3 cut(s)	50, 204, 259
LweI	GCATC	1 cut(s)	61
MaeI	CTAG	2 cut(s)	108, 144
MaeIII	GTNAC	1 cut(s)	32
MalI	GATC	2 cut(s)	92, 168
MboI	GATC	2 cut(s)	90, 166
MboII	GAAGA	1 cut(s)	161
MluCI	AATT	2 cut(s)	100, 222
MlyI	GAGTC	3 cut(s)	11, 193, 211
MnlI	CCTC	3 cut(s)	90, 107, 115
MseI	TTAA	1 cut(s)	284
MspA1I	CMGCKG	1 cut(s)	231
MspI	CCGG	2 cut(s)	191, 246
MwoI	GCNNNNNNNGC	1 cut(s)	277
NdeII	GATC	2 cut(s)	90, 166
NlaIV	GGNNCC	2 cut(s)	150, 195
PcsI	WCGNNNNNNNCGW	2 cut(s)	128, 162
PinAI	ACCGGT	1 cut(s)	190
PkrI	GCNGC	4 cut(s)	177, 180, 244, 273
PleI	GAGTC	3 cut(s)	11, 192, 211
PpsI	GAGTC	3 cut(s)	11, 192, 211
PspN4I	GGNNCC	2 cut(s)	150, 195
PsrI	GAACNNNNNNTAC	2 cut(s)	146, 178
PvuII	CAGCTG	1 cut(s)	231
RsaI	GTAC	2 cut(s)	29, 235
RsaNI	GTAC	2 cut(s)	28, 234
SaqAI	TTAA	1 cut(s)	284
SatI	GCNGC	4 cut(s)	176, 179, 243, 272
Sau3AI	GATC	2 cut(s)	90, 166
SchI	GAGTC	3 cut(s)	11, 193, 211
SetI	ASST	3 cut(s)	39, 99, 233
SfaNI	GCATC	1 cut(s)	61
SgeI	CNNG	8 cut(s)	18, 31, 49, 120, 156, 169, 203, 258
SgrAI	CRCCGGYG	1 cut(s)	245
Sse9I	AATT	2 cut(s)	100, 222
SsiI	CCGC	5 cut(s)	5, 176, 179, 243, 271
SspMI	CTAG	2 cut(s)	108, 144
TaaI	ACNGT	2 cut(s)	32, 238
TaqI	TCGA	1 cut(s)	93
TaqII	GACCGA	1 cut(s)	29
TasI	AATT	2 cut(s)	100, 222
TauI	GCSGC	4 cut(s)	178, 181, 245, 274
Tru1I	TTAA	1 cut(s)	284
Tru9I	TTAA	1 cut(s)	284
XagI	CCTNNNNNAGG	1 cut(s)	142
XmiI	GTMKAC	1 cut(s)	187
XspI	CTAG	2 cut(s)	108, 144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.