Rh7CG366600

Transcription initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000387
Physical Location & Seq
Reverse (-)
45769787 .. 45770769
983 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG366600.1

Sequence Viewer

Length: 171 bp
ATGCTTAGCGCATTAATTGTATCTCATCCTGAGATGCTTGCCAAGCTATATGAGGAGATGACTGATCAAAAACCTCTCAGATTTAGGACTCCAGATGCAGTTGCAGCTCCTTCCGTCTTCATTGCCTGTAGACATGAAAATAAGCCACGTAGTGTGAAAGAGATGTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko03022 ko05169 ko05203 map03022 map05169 map05203
Pfam Domains
Protein Families
TFIIB TF_Zn_Ribbon

Protein Analysis

56

Amino Acids

6.39

Weight (kDa)

7.83

Isoelectric Point (pI)

41.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TFIIB PF00382 15 - 56 2.9e-06 Transcription factor TFIIB repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000387)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26910 AT4G26910 AT4G26910 AT5G55070 AT5G55070
fragaria_vesca FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960
malus_domestica MD03G1198100.v1.1 MD09G1110700.v1.1 MD17G1098600.v1.1
prunus_persica Prupe.3G215800_v2.0.a1 Prupe.4G216900_v2.0.a1 Prupe.4G216900_v2.0.a1
pyrus_communis pycom03g14960 pycom09g03320 pycom17g09400
rosa_chinensis RchiOBHm_Chr2g0119431 RchiOBHm_Chr2g0119441 RchiOBHm_Chr2g0158941 RchiOBHm_Chr5g0040581 RchiOBHm_Chr5g0052421 RchiOBHm_Chr5g0052431
rosa_laevigata RLG00000002270 RLG00000012296 RLG00000021125 RLG00000031115 RLG00000033989
rosa_multiflora Rmu_co8099772.1_g000001 Rmu_co8181026.1_g000001 Rmu_co8403685.1_g000001 Rmu_sc0001893.1_g000003 Rmu_sc0004787.1_g000003 Rmu_sc0007967.1_g000007 Rmu_sc0010369.1_g000001 Rmu_ssc0000174.1_g000008
rosa_roxburghii Rroxscaffold_1G00040090 Rroxscaffold_1G00040800 Rroxscaffold_1G00049000 Rroxscaffold_2G00090860 Rroxscaffold_2G00122640 Rroxscaffold_2G00127540 Rroxscaffold_2G00128360 Rroxscaffold_3G00249890 Rroxscaffold_4G00314140 Rroxscaffold_5G00345820 Rroxscaffold_5G00345830 Rroxscaffold_5G00371680 Rroxscaffold_7G00164980 Rroxscaffold_7G00209200
rosa_rugosa Rorug01G0153500.1 Rorug02G0473100 Rorug02G0473200 Rorug02G0473200 Rorug03G0343200 Rorug05G0185800
rosa_samantha Rh1AG155300 Rh1AG275400 Rh1BG123600 Rh1CG026200 Rh1CG145600 Rh2AG539600 Rh2BG510900 Rh2BG552500 Rh2CG522900 Rh2DG522600 Rh2DG522700 Rh2DG562200 Rh3CG234300 Rh3CG302000 Rh3CG302100 Rh4DG305100 Rh5AG250900 Rh5AG272600 Rh5AG475300 Rh5BG276800 Rh5BG355700 Rh5CG308700 Rh5DG285400 Rh6BG136500 Rh6BG167900 Rh6BG220000 Rh7AG327600 Rh7AG349200 Rh7AG349300 Rh7AG349400 Rh7AG353200 Rh7CG344900 Rh7CG366500 Rh7CG366600
rosa_wichuraiana Rw1G002110 Rw2G044660 Rw3G008210 Rw4G016310 Rw4G019560 Rw5G025520 Rw5G030020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 130
AdeI CACNNNGTG 1 cut(s) 152
AluBI AGCT 2 cut(s) 46, 107
AluI AGCT 2 cut(s) 46, 107
ApeKI GCWGC 1 cut(s) 104
AseI ATTAAT 1 cut(s) 14
AspLEI GCGC 1 cut(s) 11
BbsI GAAGAC 1 cut(s) 109
BbvI GCAGC 1 cut(s) 116
BclI TGATCA 1 cut(s) 64
BfmI CTRYAG 1 cut(s) 127
BisI GCNGC 1 cut(s) 105
BlpI GCTNAGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 106
BmsI GCATC 2 cut(s) 24, 85
BpiI GAAGAC 1 cut(s) 109
BpmI CTGGAG 1 cut(s) 75
Bpu1102I GCTNAGC 1 cut(s) 5
BsaAI YACGTR 1 cut(s) 149
Bse3DI GCAATG 1 cut(s) 120
BseGI GGATG 1 cut(s) 25
BseMI GCAATG 1 cut(s) 120
BseMII CTCAG 2 cut(s) 21, 91
BseRI GAGGAG 1 cut(s) 68
BseXI GCAGC 1 cut(s) 116
Bsp143I GATC 1 cut(s) 64
Bsp1720I GCTNAGC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 22, 90
BsrDI GCAATG 1 cut(s) 120
BssMI GATC 1 cut(s) 64
BstBAI YACGTR 1 cut(s) 149
BstC8I GCNNGC 1 cut(s) 39
BstDEI CTNAG 3 cut(s) 5, 30, 77
BstF5I GGATG 1 cut(s) 25
BstHHI GCGC 1 cut(s) 11
BstKTI GATC 1 cut(s) 67
BstMBI GATC 1 cut(s) 64
BstMWI GCNNNNNNNGC 2 cut(s) 43, 104
BstSFI CTRYAG 1 cut(s) 127
BstV1I GCAGC 1 cut(s) 116
BstV2I GAAGAC 1 cut(s) 109
BtsCI GGATG 1 cut(s) 25
Cac8I GCNNGC 1 cut(s) 39
CfoI GCGC 1 cut(s) 11
CviAII CATG 1 cut(s) 134
CviJI RGCY 3 cut(s) 46, 107, 145
CviKI_1 RGCY 3 cut(s) 46, 107, 145
DdeI CTNAG 3 cut(s) 5, 30, 77
DpnI GATC 1 cut(s) 66
DpnII GATC 1 cut(s) 64
DraIII CACNNNGTG 1 cut(s) 152
FaeI CATG 1 cut(s) 137
FaiI YATR 3 cut(s) 49, 51, 135
FatI CATG 1 cut(s) 133
FbaI TGATCA 1 cut(s) 64
FblI GTMKAC 1 cut(s) 130
Fnu4HI GCNGC 1 cut(s) 105
FokI GGATG 1 cut(s) 12
Fsp4HI GCNGC 1 cut(s) 105
GlaI GCGC 1 cut(s) 10
GluI GCNGC 1 cut(s) 105
GsuI CTGGAG 1 cut(s) 75
HhaI GCGC 1 cut(s) 11
Hin1II CATG 1 cut(s) 137
Hin6I GCGC 1 cut(s) 9
HinP1I GCGC 1 cut(s) 9
HinfI GANTC 1 cut(s) 88
Hpy166II GTNNAC 1 cut(s) 131
Hpy188I TCNGA 1 cut(s) 80
Hpy188III TCNNGA 2 cut(s) 29, 92
Hpy8I GTNNAC 1 cut(s) 131
HpyAV CCTTC 1 cut(s) 120
HpyCH4IV ACGT 1 cut(s) 148
HpyCH4V TGCA 2 cut(s) 98, 104
HpyF10VI GCNNNNNNNGC 2 cut(s) 43, 104
HpyF3I CTNAG 3 cut(s) 5, 30, 77
HpySE526I ACGT 1 cut(s) 148
Hsp92II CATG 1 cut(s) 137
HspAI GCGC 1 cut(s) 9
Ksp22I TGATCA 1 cut(s) 64
Kzo9I GATC 1 cut(s) 64
LmnI GCTCC 1 cut(s) 112
LpnPI CCDG 3 cut(s) 42, 105, 139
Lsp1109I GCAGC 1 cut(s) 116
LweI GCATC 2 cut(s) 24, 85
MaeII ACGT 1 cut(s) 148
MalI GATC 1 cut(s) 66
MboI GATC 1 cut(s) 64
MboII GAAGA 1 cut(s) 109
MluCI AATT 1 cut(s) 15
MlyI GAGTC 1 cut(s) 82
MnlI CCTC 2 cut(s) 46, 84
MseI TTAA 1 cut(s) 14
MwoI GCNNNNNNNGC 2 cut(s) 43, 104
NdeII GATC 1 cut(s) 64
NlaIII CATG 1 cut(s) 137
PkrI GCNGC 1 cut(s) 106
PleI GAGTC 1 cut(s) 82
PpsI GAGTC 1 cut(s) 82
Ppu21I YACGTR 1 cut(s) 149
PshBI ATTAAT 1 cut(s) 14
SaqAI TTAA 1 cut(s) 14
SatI GCNGC 1 cut(s) 105
Sau3AI GATC 1 cut(s) 64
SchI GAGTC 1 cut(s) 82
SetI ASST 4 cut(s) 48, 76, 109, 151
SfaNI GCATC 2 cut(s) 24, 85
SfcI CTRYAG 1 cut(s) 127
SgeI CNNG 7 cut(s) 41, 50, 55, 104, 138, 146, 159
Sse9I AATT 1 cut(s) 15
TaiI ACGT 1 cut(s) 151
TasI AATT 1 cut(s) 15
Tru1I TTAA 1 cut(s) 14
Tru9I TTAA 1 cut(s) 14
TseI GCWGC 1 cut(s) 104
TspDTI ATGAA 2 cut(s) 109, 150
TspGWI ACGGA 1 cut(s) 103
VspI ATTAAT 1 cut(s) 14
XmiI GTMKAC 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.