Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000387

Physical Location & Seq

Genomic Coordinates Reverse (-)

16385778 .. 16389020

Gene Structure 3243 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00345820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGGCTGGAGGTTCATTTACAATATCCAATGGTGGATTTTATGGAAGCCTTATGAGTACCCCCATCATCAACCCTCCTCGGAATTCATCCGACAGCCACAACTACTTGAATTTAAGCTCAGTCCCCGAGAATGGACATGATGATGATGATGATGATGATGGAAATCGACCGGTTAAATGGCACGGCAGCCAACTGGAGACTTTGCATCAGCCATATACAAGGCTGTTTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008270 GO:0016020 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914

KEGG Pathways

Metabolic & Signaling

ko00020 ko00310 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00310 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

2-oxoacid_dh Biotin_lipoyl

Protein Analysis

77

Amino Acids

8.47

Weight (kDa)

4.71

Isoelectric Point (pI)

46.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2-oxoacid_dh	PF00198	1 - 27	4.4e-06	2-oxoacid dehydrogenases acyltransferase (catalytic domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26910 AT4G26910 AT4G26910 AT5G55070 AT5G55070
fragaria_vesca	FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960
malus_domestica	MD03G1198100.v1.1 MD09G1110700.v1.1 MD17G1098600.v1.1
prunus_persica	Prupe.3G215800_v2.0.a1 Prupe.4G216900_v2.0.a1 Prupe.4G216900_v2.0.a1
pyrus_communis	pycom03g14960 pycom09g03320 pycom17g09400
rosa_chinensis	RchiOBHm_Chr2g0119431 RchiOBHm_Chr2g0119441 RchiOBHm_Chr2g0158941 RchiOBHm_Chr5g0040581 RchiOBHm_Chr5g0052421 RchiOBHm_Chr5g0052431
rosa_laevigata	RLG00000002270 RLG00000012296 RLG00000021125 RLG00000031115 RLG00000033989
rosa_multiflora	Rmu_co8099772.1_g000001 Rmu_co8181026.1_g000001 Rmu_co8403685.1_g000001 Rmu_sc0001893.1_g000003 Rmu_sc0004787.1_g000003 Rmu_sc0007967.1_g000007 Rmu_sc0010369.1_g000001 Rmu_ssc0000174.1_g000008
rosa_roxburghii	Rroxscaffold_1G00040090 Rroxscaffold_1G00040800 Rroxscaffold_1G00049000 Rroxscaffold_2G00090860 Rroxscaffold_2G00122640 Rroxscaffold_2G00127540 Rroxscaffold_2G00128360 Rroxscaffold_3G00249890 Rroxscaffold_4G00314140 Rroxscaffold_5G00345820 Rroxscaffold_5G00345830 Rroxscaffold_5G00371680 Rroxscaffold_7G00164980 Rroxscaffold_7G00209200
rosa_rugosa	Rorug01G0153500.1 Rorug02G0473100 Rorug02G0473200 Rorug02G0473200 Rorug03G0343200 Rorug05G0185800
rosa_samantha	Rh1AG155300 Rh1AG275400 Rh1BG123600 Rh1CG026200 Rh1CG145600 Rh2AG539600 Rh2BG510900 Rh2BG552500 Rh2CG522900 Rh2DG522600 Rh2DG522700 Rh2DG562200 Rh3CG234300 Rh3CG302000 Rh3CG302100 Rh4DG305100 Rh5AG250900 Rh5AG272600 Rh5AG475300 Rh5BG276800 Rh5BG355700 Rh5CG308700 Rh5DG285400 Rh6BG136500 Rh6BG167900 Rh6BG220000 Rh7AG327600 Rh7AG349200 Rh7AG349300 Rh7AG349400 Rh7AG353200 Rh7CG344900 Rh7CG366500 Rh7CG366600
rosa_wichuraiana	Rw1G002110 Rw2G044660 Rw3G008210 Rw4G016310 Rw4G019560 Rw5G025520 Rw5G030020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	82, 109
AfaI	GTAC	1 cut(s)	58
AfiI	CCNNNNNNNGG	1 cut(s)	131
AgeI	ACCGGT	1 cut(s)	169
AgsI	TTSAA	1 cut(s)	109
AluBI	AGCT	1 cut(s)	117
AluI	AGCT	1 cut(s)	117
Alw26I	GTCTC	1 cut(s)	191
Ama87I	CYCGRG	1 cut(s)	125
ApeKI	GCWGC	1 cut(s)	186
ApoI	RAATTY	2 cut(s)	82, 109
AsiGI	ACCGGT	1 cut(s)	169
AvaI	CYCGRG	1 cut(s)	125
BbvI	GCAGC	1 cut(s)	198
BccI	CCATC	2 cut(s)	71, 152
BceAI	ACGGC	1 cut(s)	199
BcoDI	GTCTC	1 cut(s)	191
BisI	GCNGC	1 cut(s)	187
BlsI	GCNGC	1 cut(s)	188
BmeT110I	CYCGRG	1 cut(s)	125
BmsI	GCATC	1 cut(s)	214
BpmI	CTGGAG	2 cut(s)	27, 215
BsaBI	GATNNNNATC	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	77
BsaWI	WCCGGW	1 cut(s)	169
Bsc4I	CCNNNNNNNGG	1 cut(s)	131
Bse118I	RCCGGY	1 cut(s)	169
Bse1I	ACTGG	1 cut(s)	198
Bse8I	GATNNNNATC	1 cut(s)	162
BseDI	CCNNGG	1 cut(s)	77
BseGI	GGATG	1 cut(s)	86
BseJI	GATNNNNATC	1 cut(s)	162
BseLI	CCNNNNNNNGG	1 cut(s)	131
BseMII	CTCAG	1 cut(s)	132
BseNI	ACTGG	1 cut(s)	198
BseRI	GAGGAG	1 cut(s)	66
BseXI	GCAGC	1 cut(s)	198
Bsh1285I	CGRYCG	1 cut(s)	170
BshTI	ACCGGT	1 cut(s)	169
BsiEI	CGRYCG	1 cut(s)	170
BsiHKCI	CYCGRG	1 cut(s)	125
BsiSI	CCGG	1 cut(s)	170
BslFI	GGGAC	1 cut(s)	107
BslI	CCNNNNNNNGG	1 cut(s)	131
BsmAI	GTCTC	1 cut(s)	191
BsmFI	GGGAC	1 cut(s)	107
BsoBI	CYCGRG	1 cut(s)	125
BspCNI	CTCAG	1 cut(s)	131
BspHI	TCATGA	1 cut(s)	230
BsrFI	RCCGGY	1 cut(s)	169
BsrI	ACTGG	1 cut(s)	198
BssAI	RCCGGY	1 cut(s)	169
BssECI	CCNNGG	1 cut(s)	77
BstDEI	CTNAG	1 cut(s)	118
BstF5I	GGATG	1 cut(s)	86
BstMAI	GTCTC	1 cut(s)	191
BstMCI	CGRYCG	1 cut(s)	170
BstV1I	GCAGC	1 cut(s)	198
BtsCI	GGATG	1 cut(s)	86
CciI	TCATGA	1 cut(s)	230
Cfr10I	RCCGGY	1 cut(s)	169
Csp6I	GTAC	1 cut(s)	57
CspAI	ACCGGT	1 cut(s)	169
CviAII	CATG	2 cut(s)	137, 231
CviJI	RGCY	7 cut(s)	5, 48, 96, 117, 189, 211, 223
CviKI_1	RGCY	7 cut(s)	5, 48, 96, 117, 189, 211, 223
CviQI	GTAC	1 cut(s)	57
DdeI	CTNAG	1 cut(s)	118
Eco88I	CYCGRG	1 cut(s)	125
EcoRI	GAATTC	1 cut(s)	82
FaeI	CATG	2 cut(s)	140, 234
FaiI	YATR	6 cut(s)	42, 53, 138, 214, 216, 232
FaqI	GGGAC	1 cut(s)	107
FatI	CATG	2 cut(s)	136, 230
Fnu4HI	GCNGC	1 cut(s)	187
FokI	GGATG	1 cut(s)	73
Fsp4HI	GCNGC	1 cut(s)	187
GluI	GCNGC	1 cut(s)	187
GsuI	CTGGAG	2 cut(s)	27, 215
HapII	CCGG	1 cut(s)	170
Hin1II	CATG	2 cut(s)	140, 234
HpaII	CCGG	1 cut(s)	170
Hpy188I	TCNGA	2 cut(s)	81, 91
Hpy188III	TCNNGA	1 cut(s)	231
HpyCH4V	TGCA	1 cut(s)	205
HpyF3I	CTNAG	1 cut(s)	118
Hsp92II	CATG	2 cut(s)	140, 234
LpnPI	CCDG	2 cut(s)	179, 183
Lsp1109I	GCAGC	1 cut(s)	198
LweI	GCATC	1 cut(s)	214
MluCI	AATT	2 cut(s)	82, 109
MmeI	TCCRAC	1 cut(s)	114
MnlI	CCTC	2 cut(s)	84, 87
MseI	TTAA	2 cut(s)	113, 174
MslI	CAYNNNNRTG	1 cut(s)	141
MspI	CCGG	1 cut(s)	170
NlaIII	CATG	2 cut(s)	140, 234
PagI	TCATGA	1 cut(s)	230
PinAI	ACCGGT	1 cut(s)	169
PkrI	GCNGC	1 cut(s)	188
RsaI	GTAC	1 cut(s)	58
RsaNI	GTAC	1 cut(s)	57
RseI	CAYNNNNRTG	1 cut(s)	141
SaqAI	TTAA	2 cut(s)	113, 174
SatI	GCNGC	1 cut(s)	187
SetI	ASST	2 cut(s)	13, 119
SfaNI	GCATC	1 cut(s)	214
SgeI	CNNG	9 cut(s)	18, 90, 118, 137, 139, 149, 182, 194, 206
SmiMI	CAYNNNNRTG	1 cut(s)	141
Sse9I	AATT	2 cut(s)	82, 109
TaqI	TCGA	1 cut(s)	166
TasI	AATT	2 cut(s)	82, 109
Tru1I	TTAA	2 cut(s)	113, 174
Tru9I	TTAA	2 cut(s)	113, 174
TseI	GCWGC	1 cut(s)	186
TspDTI	ATGAA	2 cut(s)	75, 219
XapI	RAATTY	2 cut(s)	82, 109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.