Rh2AG539600

Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Forward (+)
76746162 .. 76751966
5805 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG539600.1

Sequence Viewer

Length: 1041 bp
ATGATTTGGGGGACTATACGCCGGAAAGTCTCTTCGTCTCAGGTGTTGGGACAAGCGTGGAAGGTTAGGCCTGCAGCCTCCACGCCAAACTCTTACCGGACTGTGCCAAAAGAGGCTTTATTCAATGGGAGAGGATTTGAGTGTATTCAGAGGTCAAGCTACCACATTGCCTTAGGGAGTTATGCTTCAAAGCCAAGCAGGGTAGCTACTTCACTAATGCAAACAGAATCTTTTATCGGATTGCAGAAGAGATCATTTTCTTCAGATGGAGACTTGGTTGAAGCTGTTGTTCCTTTCATGGGTGAATCTATTACTGATGGCACTCTGGCAACATTCCTAAAGAAACCTGGTGACAAAGTTGCGATTGATGAGCCTATAGCACAGATTGAAACTGATAAGGTGACAATCGATGTAGTTAGTCCTGAAGCTGGTGTTATTCAAAAGTTTGTGGCTAAGGAAGGTGAGACTGTTGAGCCAGGTGTTAAGATTGCCATCATCTCAAAATCAGGTGAAGGTGTAGAGCAAGCTGCTCCATCAGAAAAGGCTTCTAGTCAGCCAGAACCTCCTAAAGAAAAGGAAACTGCCGAAAAACAAGTTCCCAAAGCAGAACCTGCCCCTGTCAAGGAGGTATTACCCAAAAGTAGAGCACCTTCTTCACAACCACCACCTAAACATGTGGCTTCGGAACCAGTACTTCCTCCCAAAGACAGGGAAAGACGAGTTCCTATGACAAGACTGAGGAAGCGGGTGGCAATACGCTTGAAAGATTCTCAGAATACATTTGCTTTGTTAACCACATTTAACGAGGTTGATATGACTAACTTGATGAAGCTCCGTTCAGACTATAAGGATGCCTTTGTTGAAAAGCACGGAGTGAAATTGGGATTTATGTCGGGCTTTGTGAAAGCTGCTGTTAGTGCACTCGAGCAGCTGCCAGTTGTCAATGCTGTCATTGATGGCGATGATATCATATACAGGGATTACATTGATATCAGTATTGCAGTTGGGACACCTAAGTTGTCCGCAATGCTGGTGGTATGA

Protein Analysis

346

Amino Acids

37.69

Weight (kDa)

9.14

Isoelectric Point (pI)

49.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Biotin_lipoyl PF00364 97 - 166 1.1e-15 Biotin-requiring enzyme
2-oxoacid_dh PF00198 237 - 339 2.3e-26 2-oxoacid dehydrogenases acyltransferase (catalytic domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000387)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26910 AT4G26910 AT4G26910 AT5G55070 AT5G55070
fragaria_vesca FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960
malus_domestica MD03G1198100.v1.1 MD09G1110700.v1.1 MD17G1098600.v1.1
prunus_persica Prupe.3G215800_v2.0.a1 Prupe.4G216900_v2.0.a1 Prupe.4G216900_v2.0.a1
pyrus_communis pycom03g14960 pycom09g03320 pycom17g09400
rosa_chinensis RchiOBHm_Chr2g0119431 RchiOBHm_Chr2g0119441 RchiOBHm_Chr2g0158941 RchiOBHm_Chr5g0040581 RchiOBHm_Chr5g0052421 RchiOBHm_Chr5g0052431
rosa_laevigata RLG00000002270 RLG00000012296 RLG00000021125 RLG00000031115 RLG00000033989
rosa_multiflora Rmu_co8099772.1_g000001 Rmu_co8181026.1_g000001 Rmu_co8403685.1_g000001 Rmu_sc0001893.1_g000003 Rmu_sc0004787.1_g000003 Rmu_sc0007967.1_g000007 Rmu_sc0010369.1_g000001 Rmu_ssc0000174.1_g000008
rosa_roxburghii Rroxscaffold_1G00040090 Rroxscaffold_1G00040800 Rroxscaffold_1G00049000 Rroxscaffold_2G00090860 Rroxscaffold_2G00122640 Rroxscaffold_2G00127540 Rroxscaffold_2G00128360 Rroxscaffold_3G00249890 Rroxscaffold_4G00314140 Rroxscaffold_5G00345820 Rroxscaffold_5G00345830 Rroxscaffold_5G00371680 Rroxscaffold_7G00164980 Rroxscaffold_7G00209200
rosa_rugosa Rorug01G0153500.1 Rorug02G0473100 Rorug02G0473200 Rorug02G0473200 Rorug03G0343200 Rorug05G0185800
rosa_samantha Rh1AG155300 Rh1AG275400 Rh1BG123600 Rh1CG026200 Rh1CG145600 Rh2AG539600 Rh2BG510900 Rh2BG552500 Rh2CG522900 Rh2DG522600 Rh2DG522700 Rh2DG562200 Rh3CG234300 Rh3CG302000 Rh3CG302100 Rh4DG305100 Rh5AG250900 Rh5AG272600 Rh5AG475300 Rh5BG276800 Rh5BG355700 Rh5CG308700 Rh5DG285400 Rh6BG136500 Rh6BG167900 Rh6BG220000 Rh7AG327600 Rh7AG349200 Rh7AG349300 Rh7AG349400 Rh7AG353200 Rh7CG344900 Rh7CG366500 Rh7CG366600
rosa_wichuraiana Rw1G002110 Rw2G044660 Rw3G008210 Rw4G016310 Rw4G019560 Rw5G025520 Rw5G030020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 619
AciI CCGC 2 cut(s) 745, 1023
AcuI CTGAAG 2 cut(s) 246, 444
AdeI CACNNNGTG 1 cut(s) 874
AfaI GTAC 1 cut(s) 693
AfiI CCNNNNNNNGG 4 cut(s) 299, 428, 622, 708
AflIII ACRYGT 1 cut(s) 673
AgsI TTSAA 7 cut(s) 124, 189, 281, 389, 440, 763, 863
AjnI CCWGG 2 cut(s) 346, 475
AluBI AGCT 8 cut(s) 159, 206, 284, 428, 527, 832, 908, 931
AluI AGCT 8 cut(s) 159, 206, 284, 428, 527, 832, 908, 931
Alw21I GWGCWC 2 cut(s) 649, 922
Alw26I GTCTC 4 cut(s) 34, 42, 264, 458
Alw44I GTGCAC 1 cut(s) 918
AlwNI CAGNNNCTG 1 cut(s) 611
Ama87I CYCGRG 1 cut(s) 923
AoxI GGCC 1 cut(s) 68
ApaLI GTGCAC 1 cut(s) 918
ApeKI GCWGC 5 cut(s) 74, 527, 908, 928, 931
AsuHPI GGTGA 5 cut(s) 314, 362, 412, 473, 521
AvaI CYCGRG 1 cut(s) 923
AxyI CCTNAGG 1 cut(s) 172
BaeGI GKGCMC 1 cut(s) 922
BarI GAAGNNNNNNTAC 2 cut(s) 634, 666
Bbv12I GWGCWC 2 cut(s) 649, 922
BbvI GCAGC 5 cut(s) 86, 514, 895, 918, 940
BccI CCATC 5 cut(s) 260, 311, 500, 541, 950
BciT130I CCWGG 2 cut(s) 348, 477
BcoDI GTCTC 4 cut(s) 34, 42, 264, 458
BfaI CTAG 1 cut(s) 549
BfmI CTRYAG 2 cut(s) 72, 375
BfuAI ACCTGC 1 cut(s) 619
BisI GCNGC 5 cut(s) 75, 528, 909, 929, 932
BlsI GCNGC 5 cut(s) 76, 529, 910, 930, 933
BmcAI AGTACT 1 cut(s) 693
Bme1390I CCNGG 2 cut(s) 348, 477
BmeT110I CYCGRG 1 cut(s) 923
BmiI GGNNCC 1 cut(s) 687
BmrFI CCNGG 2 cut(s) 348, 477
BmsI GCATC 1 cut(s) 841
Bpu10I CCTNAGC 1 cut(s) 453
Bsa29I ATCGAT 1 cut(s) 408
BsaBI GATNNNNATC 1 cut(s) 491
BsaWI WCCGGW 1 cut(s) 96
BsaXI ACNNNNNCTCC 2 cut(s) 261, 291
Bsc4I CCNNNNNNNGG 4 cut(s) 299, 428, 622, 708
Bse1I ACTGG 2 cut(s) 689, 935
Bse21I CCTNAGG 1 cut(s) 172
Bse3DI GCAATG 2 cut(s) 165, 1032
Bse8I GATNNNNATC 1 cut(s) 491
BseBI CCWGG 2 cut(s) 348, 477
BseCI ATCGAT 1 cut(s) 408
BseGI GGATG 1 cut(s) 856
BseJI GATNNNNATC 1 cut(s) 491
BseLI CCNNNNNNNGG 4 cut(s) 299, 428, 622, 708
BseMI GCAATG 2 cut(s) 165, 1032
BseMII CTCAG 3 cut(s) 53, 728, 785
BseNI ACTGG 2 cut(s) 689, 935
BseSI GKGCMC 1 cut(s) 922
BseXI GCAGC 5 cut(s) 86, 514, 895, 918, 940
BshFI GGCC 1 cut(s) 70
BshVI ATCGAT 1 cut(s) 408
BsiHKAI GWGCWC 2 cut(s) 649, 922
BsiHKCI CYCGRG 1 cut(s) 923
BsiSI CCGG 2 cut(s) 22, 97
BslFI GGGAC 3 cut(s) 25, 63, 1021
BslI CCNNNNNNNGG 4 cut(s) 299, 428, 622, 708
BsmAI GTCTC 4 cut(s) 34, 42, 264, 458
BsmBI CGTCTC 1 cut(s) 42
BsmFI GGGAC 3 cut(s) 25, 63, 1021
BsnI GGCC 1 cut(s) 70
BsoBI CYCGRG 1 cut(s) 923
Bsp1286I GDGCHC 2 cut(s) 649, 922
Bsp143I GATC 1 cut(s) 251
BspACI CCGC 2 cut(s) 745, 1023
BspANI GGCC 1 cut(s) 70
BspCNI CTCAG 3 cut(s) 52, 729, 784
BspDI ATCGAT 1 cut(s) 408
BspLI GGNNCC 1 cut(s) 687
BspMAI CTGCAG 1 cut(s) 76
BspMI ACCTGC 1 cut(s) 619
BsrDI GCAATG 2 cut(s) 165, 1032
BsrI ACTGG 2 cut(s) 689, 935
BssMI GATC 1 cut(s) 251
Bst2UI CCWGG 2 cut(s) 348, 477
Bst4CI ACNGT 2 cut(s) 103, 469
Bst6I CTCTTC 2 cut(s) 37, 242
BstAPI GCANNNNNTGC 1 cut(s) 611
BstC8I GCNNGC 2 cut(s) 72, 525
BstDEI CTNAG 6 cut(s) 39, 172, 453, 737, 771, 1014
BstF5I GGATG 1 cut(s) 856
BstKTI GATC 1 cut(s) 254
BstMAI GTCTC 4 cut(s) 34, 42, 264, 458
BstMBI GATC 1 cut(s) 251
BstMWI GCNNNNNNNGC 2 cut(s) 611, 917
BstNI CCWGG 2 cut(s) 348, 477
BstNSI RCATGY 1 cut(s) 677
BstSCI CCNGG 2 cut(s) 346, 475
BstSFI CTRYAG 2 cut(s) 72, 375
BstSLI GKGCMC 1 cut(s) 922
BstV1I GCAGC 5 cut(s) 86, 514, 895, 918, 940
Bsu15I ATCGAT 1 cut(s) 408
Bsu36I CCTNAGG 1 cut(s) 172
BsuRI GGCC 1 cut(s) 70
BsuTUI ATCGAT 1 cut(s) 408
BtgZI GCGATG 1 cut(s) 975
BtsCI GGATG 1 cut(s) 856
BveI ACCTGC 1 cut(s) 619
Cac8I GCNNGC 2 cut(s) 72, 525
CaiI CAGNNNCTG 1 cut(s) 611
ClaI ATCGAT 1 cut(s) 408
CsiI ACCWGGT 1 cut(s) 346
Csp6I GTAC 1 cut(s) 692
CspCI CAANNNNNGTGG 1 cut(s) 1014
CviAII CATG 2 cut(s) 298, 674
CviQI GTAC 1 cut(s) 692
DdeI CTNAG 6 cut(s) 39, 172, 453, 737, 771, 1014
DpnI GATC 1 cut(s) 253
DpnII GATC 1 cut(s) 251
DraIII CACNNNGTG 1 cut(s) 874
Eam1104I CTCTTC 2 cut(s) 37, 242
EarI CTCTTC 2 cut(s) 37, 242
Eco147I AGGCCT 1 cut(s) 70
Eco32I GATATC 2 cut(s) 967, 991
Eco57I CTGAAG 2 cut(s) 246, 444
Eco81I CCTNAGG 1 cut(s) 172
Eco88I CYCGRG 1 cut(s) 923
EcoRII CCWGG 2 cut(s) 346, 475
EcoRV GATATC 2 cut(s) 967, 991
Esp3I CGTCTC 1 cut(s) 42
FaeI CATG 2 cut(s) 301, 677
FalI AAGNNNNNCTT 2 cut(s) 839, 871
FaqI GGGAC 3 cut(s) 25, 63, 1021
FatI CATG 2 cut(s) 297, 673
FauI CCCGC 1 cut(s) 738
Fnu4HI GCNGC 5 cut(s) 75, 528, 909, 929, 932
FokI GGATG 1 cut(s) 863
Fsp4HI GCNGC 5 cut(s) 75, 528, 909, 929, 932
FspBI CTAG 1 cut(s) 549
GluI GCNGC 5 cut(s) 75, 528, 909, 929, 932
HaeIII GGCC 1 cut(s) 70
HapII CCGG 2 cut(s) 22, 97
Hin1II CATG 2 cut(s) 301, 677
HincII GTYRAC 1 cut(s) 792
HindII GTYRAC 1 cut(s) 792
HinfI GANTC 3 cut(s) 227, 305, 767
HpaI GTTAAC 1 cut(s) 792
HpaII CCGG 2 cut(s) 22, 97
HphI GGTGA 5 cut(s) 314, 362, 412, 473, 521
Hpy166II GTNNAC 2 cut(s) 792, 920
Hpy188I TCNGA 7 cut(s) 150, 239, 265, 538, 685, 774, 841
Hpy188III TCNNGA 1 cut(s) 422
Hpy8I GTNNAC 2 cut(s) 792, 920
HpyAV CCTTC 4 cut(s) 55, 452, 506, 660
HpyCH4III ACNGT 2 cut(s) 103, 469
HpyCH4V TGCA 5 cut(s) 74, 220, 244, 920, 1001
HpyF10VI GCNNNNNNNGC 2 cut(s) 611, 917
HpyF3I CTNAG 6 cut(s) 39, 172, 453, 737, 771, 1014
Hsp92II CATG 2 cut(s) 301, 677
KspAI GTTAAC 1 cut(s) 792
Kzo9I GATC 1 cut(s) 251
LmnI GCTCC 2 cut(s) 535, 837
Lsp1109I GCAGC 5 cut(s) 86, 514, 895, 918, 940
LweI GCATC 1 cut(s) 841
MabI ACCWGGT 1 cut(s) 346
MaeI CTAG 1 cut(s) 549
MaeIII GTNAC 2 cut(s) 350, 400
MalI GATC 1 cut(s) 253
MboI GATC 1 cut(s) 251
MboII GAAGA 4 cut(s) 24, 252, 259, 645
MhlI GDGCHC 2 cut(s) 649, 922
MluCI AATT 1 cut(s) 878
MnlI CCTC 9 cut(s) 88, 106, 125, 144, 573, 619, 708, 732, 799
MseI TTAA 3 cut(s) 483, 791, 801
MspA1I CMGCKG 1 cut(s) 931
MspI CCGG 2 cut(s) 22, 97
MspR9I CCNGG 2 cut(s) 348, 477
MvaI CCWGG 2 cut(s) 348, 477
MwoI GCNNNNNNNGC 2 cut(s) 611, 917
NdeII GATC 1 cut(s) 251
NlaIII CATG 2 cut(s) 301, 677
NlaIV GGNNCC 1 cut(s) 687
NmuCI GTSAC 2 cut(s) 350, 400
NspI RCATGY 1 cut(s) 677
PaeR7I CTCGAG 1 cut(s) 923
PceI AGGCCT 1 cut(s) 70
PciI ACATGT 1 cut(s) 673
PfeI GAWTC 3 cut(s) 227, 305, 767
PkrI GCNGC 5 cut(s) 76, 529, 910, 930, 933
PscI ACATGT 1 cut(s) 673
Psp6I CCWGG 2 cut(s) 346, 475
PspGI CCWGG 2 cut(s) 346, 475
PspN4I GGNNCC 1 cut(s) 687
PspXI VCTCGAGB 1 cut(s) 923
PstI CTGCAG 1 cut(s) 76
PstNI CAGNNNCTG 1 cut(s) 611
PvuII CAGCTG 1 cut(s) 931
RsaI GTAC 1 cut(s) 693
RsaNI GTAC 1 cut(s) 692
SaqAI TTAA 3 cut(s) 483, 791, 801
SatI GCNGC 5 cut(s) 75, 528, 909, 929, 932
Sau3AI GATC 1 cut(s) 251
ScaI AGTACT 1 cut(s) 693
ScrFI CCNGG 2 cut(s) 348, 477
SduI GDGCHC 2 cut(s) 649, 922
SexAI ACCWGGT 1 cut(s) 346
SfaNI GCATC 1 cut(s) 841
SfcI CTRYAG 2 cut(s) 72, 375
Sfr274I CTCGAG 1 cut(s) 923
SlaI CTCGAG 1 cut(s) 923
SmlI CTYRAG 1 cut(s) 923
SmoI CTYRAG 1 cut(s) 923
Sse9I AATT 1 cut(s) 878
SseBI AGGCCT 1 cut(s) 70
SsiI CCGC 2 cut(s) 745, 1023
SspMI CTAG 1 cut(s) 549
StuI AGGCCT 1 cut(s) 70
StyD4I CCNGG 2 cut(s) 346, 475
TaaI ACNGT 2 cut(s) 103, 469
TaqI TCGA 2 cut(s) 408, 924
TasI AATT 1 cut(s) 878
TatI WGTACW 1 cut(s) 691
TfiI GAWTC 3 cut(s) 227, 305, 767
Tru1I TTAA 3 cut(s) 483, 791, 801
Tru9I TTAA 3 cut(s) 483, 791, 801
TseFI GTSAC 2 cut(s) 350, 400
TseI GCWGC 5 cut(s) 74, 527, 908, 928, 931
Tsp45I GTSAC 2 cut(s) 350, 400
TspDTI ATGAA 2 cut(s) 286, 842
TspGWI ACGGA 2 cut(s) 824, 885
VneI GTGCAC 1 cut(s) 918
XceI RCATGY 1 cut(s) 677
XhoI CTCGAG 1 cut(s) 923
XspI CTAG 1 cut(s) 549
ZrmI AGTACT 1 cut(s) 693
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.