Rh3CG234300

Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000387
Physical Location & Seq
Forward (+)
22210834 .. 22211799
966 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG234300.1

Sequence Viewer

Length: 309 bp
ATGGATAGTGGATCTTCTTATTACTTTTCCCATGAGCCTGGAGACCTGGTGGAAATTGATGAAGCAATTGCTCAAATTGAAACAGATAAGGTCACGATCGATGTTGCTAGTCCTGAATCCGGTGTAATTGTGAAGTTTGTAGTCAATAAAGGGGATACTATGGAACCAAGCACCAAGATTGTTGTCATACTAAAGTCCAATGAAGGTGTATCCCATGTGGGTCCATCTGAGAAAACATTGGAGAAAGCTGTTCCACAACCAGCTTCCCCTGTAGAAACAATTGGAAGAATCAAACATCTAAAGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00020 ko00310 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00310 map01100 map01110 map01120 map01130 map01200
Pfam Domains
Protein Families
2-oxoacid_dh Biotin_lipoyl

Protein Analysis

102

Amino Acids

10.96

Weight (kDa)

4.93

Isoelectric Point (pI)

44.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Biotin_lipoyl PF00364 10 - 63 8.1e-12 Biotin-requiring enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000387)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26910 AT4G26910 AT4G26910 AT5G55070 AT5G55070
fragaria_vesca FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960
malus_domestica MD03G1198100.v1.1 MD09G1110700.v1.1 MD17G1098600.v1.1
prunus_persica Prupe.3G215800_v2.0.a1 Prupe.4G216900_v2.0.a1 Prupe.4G216900_v2.0.a1
pyrus_communis pycom03g14960 pycom09g03320 pycom17g09400
rosa_chinensis RchiOBHm_Chr2g0119431 RchiOBHm_Chr2g0119441 RchiOBHm_Chr2g0158941 RchiOBHm_Chr5g0040581 RchiOBHm_Chr5g0052421 RchiOBHm_Chr5g0052431
rosa_laevigata RLG00000002270 RLG00000012296 RLG00000021125 RLG00000031115 RLG00000033989
rosa_multiflora Rmu_co8099772.1_g000001 Rmu_co8181026.1_g000001 Rmu_co8403685.1_g000001 Rmu_sc0001893.1_g000003 Rmu_sc0004787.1_g000003 Rmu_sc0007967.1_g000007 Rmu_sc0010369.1_g000001 Rmu_ssc0000174.1_g000008
rosa_roxburghii Rroxscaffold_1G00040090 Rroxscaffold_1G00040800 Rroxscaffold_1G00049000 Rroxscaffold_2G00090860 Rroxscaffold_2G00122640 Rroxscaffold_2G00127540 Rroxscaffold_2G00128360 Rroxscaffold_3G00249890 Rroxscaffold_4G00314140 Rroxscaffold_5G00345820 Rroxscaffold_5G00345830 Rroxscaffold_5G00371680 Rroxscaffold_7G00164980 Rroxscaffold_7G00209200
rosa_rugosa Rorug01G0153500.1 Rorug02G0473100 Rorug02G0473200 Rorug02G0473200 Rorug03G0343200 Rorug05G0185800
rosa_samantha Rh1AG155300 Rh1AG275400 Rh1BG123600 Rh1CG026200 Rh1CG145600 Rh2AG539600 Rh2BG510900 Rh2BG552500 Rh2CG522900 Rh2DG522600 Rh2DG522700 Rh2DG562200 Rh3CG234300 Rh3CG302000 Rh3CG302100 Rh4DG305100 Rh5AG250900 Rh5AG272600 Rh5AG475300 Rh5BG276800 Rh5BG355700 Rh5CG308700 Rh5DG285400 Rh6BG136500 Rh6BG167900 Rh6BG220000 Rh7AG327600 Rh7AG349200 Rh7AG349300 Rh7AG349400 Rh7AG353200 Rh7CG344900 Rh7CG366500 Rh7CG366600
rosa_wichuraiana Rw1G002110 Rw2G044660 Rw3G008210 Rw4G016310 Rw4G019560 Rw5G025520 Rw5G030020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 19
AfiI CCNNNNNNNGG 1 cut(s) 119
AgsI TTSAA 1 cut(s) 80
AjnI CCWGG 2 cut(s) 37, 45
AluBI AGCT 2 cut(s) 248, 263
AluI AGCT 2 cut(s) 248, 263
Alw26I GTCTC 1 cut(s) 36
AlwI GGATC 1 cut(s) 19
AspS9I GGNCC 1 cut(s) 221
AvaII GGWCC 1 cut(s) 221
BccI CCATC 1 cut(s) 232
BciT130I CCWGG 2 cut(s) 39, 47
BciVI GTATCC 2 cut(s) 148, 220
BcoDI GTCTC 1 cut(s) 36
BfaI CTAG 1 cut(s) 108
BfmI CTRYAG 1 cut(s) 270
BfuI GTATCC 2 cut(s) 148, 220
Bme1390I CCNGG 2 cut(s) 39, 47
Bme18I GGWCC 1 cut(s) 221
BmgT120I GGNCC 1 cut(s) 221
BmiI GGNNCC 2 cut(s) 165, 222
BmrFI CCNGG 2 cut(s) 39, 47
BpmI CTGGAG 1 cut(s) 60
Bsa29I ATCGAT 1 cut(s) 99
BsaI GGTCTC 1 cut(s) 36
BsaWI WCCGGW 1 cut(s) 119
BsaXI ACNNNNNCTCC 2 cut(s) 33, 63
Bsc4I CCNNNNNNNGG 1 cut(s) 119
BseBI CCWGG 2 cut(s) 39, 47
BseCI ATCGAT 1 cut(s) 99
BseLI CCNNNNNNNGG 1 cut(s) 119
BseMII CTCAG 1 cut(s) 219
Bsh1285I CGRYCG 1 cut(s) 99
BshVI ATCGAT 1 cut(s) 99
BsiEI CGRYCG 1 cut(s) 99
BsiSI CCGG 1 cut(s) 120
BslI CCNNNNNNNGG 1 cut(s) 119
BsmAI GTCTC 1 cut(s) 36
Bso31I GGTCTC 1 cut(s) 36
Bsp143I GATC 2 cut(s) 11, 96
BspCNI CTCAG 1 cut(s) 220
BspDI ATCGAT 1 cut(s) 99
BspLI GGNNCC 2 cut(s) 165, 222
BspPI GGATC 1 cut(s) 19
BspTNI GGTCTC 1 cut(s) 36
BssMI GATC 2 cut(s) 11, 96
Bst2UI CCWGG 2 cut(s) 39, 47
BstDEI CTNAG 1 cut(s) 228
BstKTI GATC 2 cut(s) 14, 99
BstMAI GTCTC 1 cut(s) 36
BstMBI GATC 2 cut(s) 11, 96
BstMCI CGRYCG 1 cut(s) 99
BstNI CCWGG 2 cut(s) 39, 47
BstSCI CCNGG 2 cut(s) 37, 45
BstSFI CTRYAG 1 cut(s) 270
BstX2I RGATCY 1 cut(s) 11
BstXI CCANNNNNNTGG 1 cut(s) 38
BstYI RGATCY 1 cut(s) 11
Bsu15I ATCGAT 1 cut(s) 99
BsuI GTATCC 2 cut(s) 148, 220
BsuTUI ATCGAT 1 cut(s) 99
Cfr13I GGNCC 1 cut(s) 221
ClaI ATCGAT 1 cut(s) 99
CsiI ACCWGGT 1 cut(s) 45
CviAII CATG 2 cut(s) 32, 215
CviJI RGCY 3 cut(s) 37, 248, 263
CviKI_1 RGCY 3 cut(s) 37, 248, 263
DdeI CTNAG 1 cut(s) 228
DpnI GATC 2 cut(s) 13, 98
DpnII GATC 2 cut(s) 11, 96
Eco31I GGTCTC 1 cut(s) 36
Eco47I GGWCC 1 cut(s) 221
EcoRII CCWGG 2 cut(s) 37, 45
FaeI CATG 2 cut(s) 35, 218
FaiI YATR 4 cut(s) 33, 161, 188, 216
FatI CATG 2 cut(s) 31, 214
FspBI CTAG 1 cut(s) 108
GsuI CTGGAG 1 cut(s) 60
HapII CCGG 1 cut(s) 120
Hin1II CATG 2 cut(s) 35, 218
HinfI GANTC 2 cut(s) 116, 288
HpaII CCGG 1 cut(s) 120
Hpy188I TCNGA 1 cut(s) 229
Hpy188III TCNNGA 2 cut(s) 94, 113
HpyAV CCTTC 1 cut(s) 197
HpyF3I CTNAG 1 cut(s) 228
Hsp92II CATG 2 cut(s) 35, 218
Kzo9I GATC 2 cut(s) 11, 96
LpnPI CCDG 8 cut(s) 24, 32, 51, 59, 126, 133, 273, 282
MabI ACCWGGT 1 cut(s) 45
MaeI CTAG 1 cut(s) 108
MaeIII GTNAC 1 cut(s) 91
MalI GATC 2 cut(s) 13, 98
MboI GATC 2 cut(s) 11, 96
MboII GAAGA 2 cut(s) 6, 297
MfeI CAATTG 2 cut(s) 66, 279
MflI RGATCY 1 cut(s) 11
MluCI AATT 5 cut(s) 54, 66, 75, 126, 279
MspI CCGG 1 cut(s) 120
MspR9I CCNGG 2 cut(s) 39, 47
MunI CAATTG 2 cut(s) 66, 279
MvaI CCWGG 2 cut(s) 39, 47
NdeII GATC 2 cut(s) 11, 96
NlaIII CATG 2 cut(s) 35, 218
NlaIV GGNNCC 2 cut(s) 165, 222
NmuCI GTSAC 1 cut(s) 91
PfeI GAWTC 2 cut(s) 116, 288
Ple19I CGATCG 1 cut(s) 99
Psp6I CCWGG 2 cut(s) 37, 45
PspGI CCWGG 2 cut(s) 37, 45
PspN4I GGNNCC 2 cut(s) 165, 222
PspPI GGNCC 1 cut(s) 221
PsuI RGATCY 1 cut(s) 11
PvuI CGATCG 1 cut(s) 99
Sau3AI GATC 2 cut(s) 11, 96
Sau96I GGNCC 1 cut(s) 221
ScrFI CCNGG 2 cut(s) 39, 47
SetI ASST 5 cut(s) 48, 93, 208, 250, 265
SexAI ACCWGGT 1 cut(s) 45
SfcI CTRYAG 1 cut(s) 270
SinI GGWCC 1 cut(s) 221
Sse9I AATT 5 cut(s) 54, 66, 75, 126, 279
SspMI CTAG 1 cut(s) 108
StyD4I CCNGG 2 cut(s) 37, 45
TaqI TCGA 1 cut(s) 99
TasI AATT 5 cut(s) 54, 66, 75, 126, 279
TfiI GAWTC 2 cut(s) 116, 288
TseFI GTSAC 1 cut(s) 91
Tsp45I GTSAC 1 cut(s) 91
TspDTI ATGAA 2 cut(s) 75, 216
VpaK11BI GGWCC 1 cut(s) 221
XspI CTAG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.