Rmu_sc0004787.1_g000003

Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004787.1
OG0000387
Physical Location & Seq
Reverse (-)
7621 .. 11700
4080 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004787.1_g000003.1.cds

Sequence Viewer

Length: 1020 bp
atggcggggaagaccgactcggtgtcgattcgggtaccgtaccggaacctgaaggatacggaagttgaaatgatggggatggatgatgagcctcatcatcggatcgacctcaattcctcttggtcgtctccgtcgccgtcgtcgccgtcctctgttagggttccgaatgggaacagcgatcttcagccgccgcagagtctacgggttcctaatcagaacactctgatgactctaattctcagctatacgtttgtagccaatgaaggggatactgtggaaccaggcaccaagattgctatcatactaaagtccggtgaaggtgtatcccatgtgggtccatctgagaaaacactggaggaagctattccacaaccagcttccccggtagaaacaattagcaagaatgaaacatctaaagttgaaataactccagttaccgataagcctaaaggaccctccccaccatctcccaaaccctcagctcaagaacctcagctcccccctaaggaacgagaaagacgaattcctatgacaacgcttcggaaacgaattgctaaaagattgaaagattcacagaatacatatgcaatgcttacaacattcaatgaagttgatatgacaaatttgatgaagcttcgttgtgacttcaaggatgcatctgttgagaagcatggggtcaagttggggcttatgtcgagattcatcaaggctgctgtcagtgagctccaaaatcagcctactattaatgcagtcattgatggggatgatatcatatatagagattacatagatataagtgcagctgtgggtacttcaaagggccttgttgtgccagttgtcagcaatgttgataagatgaattgtggtgagattgagaaggagatcaattcgcttgcaaagaaggcaaatgagggacgtctttcaattaatgatatggctggaggttcgtttacaatatccaattgtggattttatggaagccttataagtacccccatcatcaaccttcctcaggtctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00020 ko00310 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00310 map01100 map01110 map01120 map01130 map01200
Pfam Domains
Protein Families
2-oxoacid_dh Biotin_lipoyl

Protein Analysis

339

Amino Acids

36.94

Weight (kDa)

6.17

Isoelectric Point (pI)

48.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000387)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26910 AT4G26910 AT4G26910 AT5G55070 AT5G55070
fragaria_vesca FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960
malus_domestica MD03G1198100.v1.1 MD09G1110700.v1.1 MD17G1098600.v1.1
prunus_persica Prupe.3G215800_v2.0.a1 Prupe.4G216900_v2.0.a1 Prupe.4G216900_v2.0.a1
pyrus_communis pycom03g14960 pycom09g03320 pycom17g09400
rosa_chinensis RchiOBHm_Chr2g0119431 RchiOBHm_Chr2g0119441 RchiOBHm_Chr2g0158941 RchiOBHm_Chr5g0040581 RchiOBHm_Chr5g0052421 RchiOBHm_Chr5g0052431
rosa_laevigata RLG00000002270 RLG00000012296 RLG00000021125 RLG00000031115 RLG00000033989
rosa_multiflora Rmu_co8099772.1_g000001 Rmu_co8181026.1_g000001 Rmu_co8403685.1_g000001 Rmu_sc0001893.1_g000003 Rmu_sc0004787.1_g000003 Rmu_sc0007967.1_g000007 Rmu_sc0010369.1_g000001 Rmu_ssc0000174.1_g000008
rosa_roxburghii Rroxscaffold_1G00040090 Rroxscaffold_1G00040800 Rroxscaffold_1G00049000 Rroxscaffold_2G00090860 Rroxscaffold_2G00122640 Rroxscaffold_2G00127540 Rroxscaffold_2G00128360 Rroxscaffold_3G00249890 Rroxscaffold_4G00314140 Rroxscaffold_5G00345820 Rroxscaffold_5G00345830 Rroxscaffold_5G00371680 Rroxscaffold_7G00164980 Rroxscaffold_7G00209200
rosa_rugosa Rorug01G0153500.1 Rorug02G0473100 Rorug02G0473200 Rorug02G0473200 Rorug03G0343200 Rorug05G0185800
rosa_samantha Rh1AG155300 Rh1AG275400 Rh1BG123600 Rh1CG026200 Rh1CG145600 Rh2AG539600 Rh2BG510900 Rh2BG552500 Rh2CG522900 Rh2DG522600 Rh2DG522700 Rh2DG562200 Rh3CG234300 Rh3CG302000 Rh3CG302100 Rh4DG305100 Rh5AG250900 Rh5AG272600 Rh5AG475300 Rh5BG276800 Rh5BG355700 Rh5CG308700 Rh5DG285400 Rh6BG136500 Rh6BG167900 Rh6BG220000 Rh7AG327600 Rh7AG349200 Rh7AG349300 Rh7AG349400 Rh7AG353200 Rh7CG344900 Rh7CG366500 Rh7CG366600
rosa_wichuraiana Rw1G002110 Rw2G044660 Rw3G008210 Rw4G016310 Rw4G019560 Rw5G025520 Rw5G030020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 986
AatII GACGTC 1 cut(s) 919
Acc65I GGTACC 1 cut(s) 34
AccB1I GGYRCC 2 cut(s) 34, 284
AccI GTMKAC 1 cut(s) 199
AciI CCGC 3 cut(s) 5, 188, 191
AclWI GGATC 1 cut(s) 110
AcsI RAATTY 2 cut(s) 522, 622
AcuI CTGAAG 2 cut(s) 71, 167
AcyI GRCGYC 1 cut(s) 916
AfaI GTAC 4 cut(s) 36, 41, 811, 991
AfiI CCNNNNNNNGG 4 cut(s) 156, 264, 505, 1012
AgsI TTSAA 7 cut(s) 68, 422, 565, 604, 649, 816, 924
AhdI GACNNNNNGTC 1 cut(s) 22
AjnI CCWGG 1 cut(s) 280
AloI GAACNNNNNNTCC 2 cut(s) 480, 512
AluBI AGCT 8 cut(s) 243, 362, 377, 482, 496, 634, 724, 803
AluI AGCT 8 cut(s) 243, 362, 377, 482, 496, 634, 724, 803
Alw21I GWGCWC 1 cut(s) 726
Alw26I GTCTC 1 cut(s) 132
AlwI GGATC 1 cut(s) 110
AoxI GGCC 1 cut(s) 820
ApeKI GCWGC 2 cut(s) 710, 800
ApoI RAATTY 2 cut(s) 522, 622
AseI ATTAAT 2 cut(s) 744, 927
Asp700I GAANNNNTTC 1 cut(s) 363
Asp718I GGTACC 1 cut(s) 34
AspS9I GGNCC 3 cut(s) 335, 452, 820
AsuC2I CCSGG 1 cut(s) 383
AsuHPI GGTGA 2 cut(s) 326, 878
AvaII GGWCC 2 cut(s) 335, 452
AxyI CCTNAGG 2 cut(s) 504, 1011
BaeI ACNNNNGTAYC 2 cut(s) 48, 81
BanI GGYRCC 2 cut(s) 34, 284
BanII GRGCYC 1 cut(s) 726
BbsI GAAGAC 1 cut(s) 17
Bbv12I GWGCWC 1 cut(s) 726
BbvCI CCTCAGC 2 cut(s) 478, 492
BbvI GCAGC 2 cut(s) 697, 812
BccI CCATC 6 cut(s) 67, 73, 346, 472, 752, 1004
BceAI ACGGC 2 cut(s) 121, 130
BciT130I CCWGG 1 cut(s) 282
BciVI GTATCC 3 cut(s) 49, 262, 334
BcnI CCSGG 1 cut(s) 383
BcoDI GTCTC 1 cut(s) 132
BfuI GTATCC 3 cut(s) 49, 262, 334
BisI GCNGC 4 cut(s) 188, 191, 711, 801
BlsI GCNGC 4 cut(s) 189, 192, 712, 802
Bme1390I CCNGG 2 cut(s) 282, 383
Bme18I GGWCC 2 cut(s) 335, 452
BmeRI GACNNNNNGTC 1 cut(s) 22
BmgT120I GGNCC 3 cut(s) 335, 452, 820
BmiI GGNNCC 8 cut(s) 36, 47, 162, 207, 279, 286, 336, 454
BmrFI CCNGG 2 cut(s) 282, 383
BmsI GCATC 2 cut(s) 643, 665
BpiI GAAGAC 1 cut(s) 17
BpmI CTGGAG 3 cut(s) 374, 414, 960
Bpu10I CCTNAGC 2 cut(s) 478, 492
BpuEI CTTGAG 1 cut(s) 468
BpuMI CCSGG 1 cut(s) 383
BsaBI GATNNNNATC 1 cut(s) 296
BsaHI GRCGYC 1 cut(s) 916
BsaJI CCNNGG 1 cut(s) 381
BsaWI WCCGGW 2 cut(s) 42, 311
BsaXI ACNNNNNCTCC 2 cut(s) 480, 510
Bsc4I CCNNNNNNNGG 4 cut(s) 156, 264, 505, 1012
Bse1I ACTGG 3 cut(s) 357, 431, 833
Bse21I CCTNAGG 2 cut(s) 504, 1011
Bse3DI GCAATG 2 cut(s) 594, 850
Bse8I GATNNNNATC 1 cut(s) 296
BseBI CCWGG 1 cut(s) 282
BseDI CCNNGG 1 cut(s) 381
BseGI GGATG 4 cut(s) 84, 88, 658, 769
BseJI GATNNNNATC 1 cut(s) 296
BseLI CCNNNNNNNGG 4 cut(s) 156, 264, 505, 1012
BseMI GCAATG 2 cut(s) 594, 850
BseMII CTCAG 4 cut(s) 253, 333, 492, 506
BseNI ACTGG 3 cut(s) 357, 431, 833
BseXI GCAGC 2 cut(s) 697, 812
BsgI GTGCAG 1 cut(s) 819
BshFI GGCC 1 cut(s) 822
BshNI GGYRCC 2 cut(s) 34, 284
BsiHKAI GWGCWC 1 cut(s) 726
BsiSI CCGG 3 cut(s) 43, 312, 383
BslFI GGGAC 1 cut(s) 927
BslI CCNNNNNNNGG 4 cut(s) 156, 264, 505, 1012
BsmAI GTCTC 1 cut(s) 132
BsmBI CGTCTC 1 cut(s) 132
BsmFI GGGAC 1 cut(s) 927
BsnI GGCC 1 cut(s) 822
Bsp1286I GDGCHC 1 cut(s) 726
Bsp143I GATC 3 cut(s) 102, 178, 882
BspACI CCGC 3 cut(s) 5, 188, 191
BspANI GGCC 1 cut(s) 822
BspCNI CTCAG 4 cut(s) 252, 334, 491, 505
BspLI GGNNCC 8 cut(s) 36, 47, 162, 207, 279, 286, 336, 454
BspPI GGATC 1 cut(s) 110
BspT107I GGYRCC 2 cut(s) 34, 284
BsrDI GCAATG 2 cut(s) 594, 850
BsrI ACTGG 3 cut(s) 357, 431, 833
BssECI CCNNGG 1 cut(s) 381
BssMI GATC 3 cut(s) 102, 178, 882
BssNI GRCGYC 1 cut(s) 916
Bst2UI CCWGG 1 cut(s) 282
Bst4CI ACNGT 2 cut(s) 39, 274
BstACI GRCGYC 1 cut(s) 916
BstC8I GCNNGC 1 cut(s) 894
BstDEI CTNAG 6 cut(s) 239, 342, 478, 492, 504, 1011
BstENI CCTNNNNNAGG 2 cut(s) 154, 1010
BstF5I GGATG 4 cut(s) 84, 88, 658, 769
BstKTI GATC 3 cut(s) 105, 181, 885
BstMAI GTCTC 1 cut(s) 132
BstMBI GATC 3 cut(s) 102, 178, 882
BstMWI GCNNNNNNNGC 2 cut(s) 142, 902
BstNI CCWGG 1 cut(s) 282
BstSCI CCNGG 2 cut(s) 280, 381
BstV1I GCAGC 2 cut(s) 697, 812
BstV2I GAAGAC 1 cut(s) 17
Bsu36I CCTNAGG 2 cut(s) 504, 1011
BsuI GTATCC 3 cut(s) 49, 262, 334
BsuRI GGCC 1 cut(s) 822
BtsCI GGATG 4 cut(s) 84, 88, 658, 769
BtsIMutI CAGTG 2 cut(s) 350, 724
Cac8I GCNNGC 1 cut(s) 894
Cfr13I GGNCC 3 cut(s) 335, 452, 820
Csp6I GTAC 4 cut(s) 35, 40, 810, 990
CviAII CATG 2 cut(s) 329, 671
CviQI GTAC 4 cut(s) 35, 40, 810, 990
DdeI CTNAG 6 cut(s) 239, 342, 478, 492, 504, 1011
DpnI GATC 3 cut(s) 104, 180, 884
DpnII GATC 3 cut(s) 102, 178, 882
DriI GACNNNNNGTC 1 cut(s) 22
Eam1105I GACNNNNNGTC 1 cut(s) 22
Ecl136II GAGCTC 1 cut(s) 724
Eco24I GRGCYC 1 cut(s) 726
Eco32I GATATC 1 cut(s) 769
Eco47I GGWCC 2 cut(s) 335, 452
Eco53kI GAGCTC 1 cut(s) 724
Eco57I CTGAAG 2 cut(s) 71, 167
Eco81I CCTNAGG 2 cut(s) 504, 1011
EcoICRI GAGCTC 1 cut(s) 724
EcoNI CCTNNNNNAGG 2 cut(s) 154, 1010
EcoO109I RGGNCCY 2 cut(s) 452, 820
EcoRI GAATTC 1 cut(s) 522
EcoRII CCWGG 1 cut(s) 280
EcoRV GATATC 1 cut(s) 769
EcoT22I ATGCAT 1 cut(s) 658
EcoT38I GRGCYC 1 cut(s) 726
Esp3I CGTCTC 1 cut(s) 132
FaeI CATG 2 cut(s) 332, 674
FaqI GGGAC 1 cut(s) 927
FatI CATG 2 cut(s) 328, 670
FauNDI CATATG 1 cut(s) 583
FblI GTMKAC 1 cut(s) 199
Fnu4HI GCNGC 4 cut(s) 188, 191, 711, 801
FokI GGATG 4 cut(s) 91, 95, 665, 776
FriOI GRGCYC 1 cut(s) 726
Fsp4HI GCNGC 4 cut(s) 188, 191, 711, 801
GluI GCNGC 4 cut(s) 188, 191, 711, 801
GsuI CTGGAG 3 cut(s) 374, 414, 960
HaeIII GGCC 1 cut(s) 822
HapII CCGG 3 cut(s) 43, 312, 383
Hin1I GRCGYC 1 cut(s) 916
Hin1II CATG 2 cut(s) 332, 674
HindIII AAGCTT 1 cut(s) 632
HinfI GANTC 6 cut(s) 17, 28, 196, 229, 569, 699
HpaII CCGG 3 cut(s) 43, 312, 383
HphI GGTGA 2 cut(s) 326, 878
Hpy166II GTNNAC 2 cut(s) 200, 951
Hpy188I TCNGA 7 cut(s) 102, 165, 216, 225, 343, 543, 1019
Hpy188III TCNNGA 2 cut(s) 485, 696
Hpy8I GTNNAC 2 cut(s) 200, 951
Hpy99I CGWCG 3 cut(s) 136, 142, 145
HpyAV CCTTC 6 cut(s) 46, 257, 311, 871, 895, 1016
HpyCH4III ACNGT 2 cut(s) 39, 274
HpyCH4IV ACGT 2 cut(s) 248, 916
HpyCH4V TGCA 5 cut(s) 587, 656, 749, 800, 896
HpyF10VI GCNNNNNNNGC 2 cut(s) 142, 902
HpyF3I CTNAG 6 cut(s) 239, 342, 478, 492, 504, 1011
HpySE526I ACGT 2 cut(s) 248, 916
Hsp92I GRCGYC 1 cut(s) 916
Hsp92II CATG 2 cut(s) 332, 674
KpnI GGTACC 1 cut(s) 38
Kzo9I GATC 3 cut(s) 102, 178, 882
LmnI GCTCC 2 cut(s) 501, 729
Lsp1109I GCAGC 2 cut(s) 697, 812
LweI GCATC 2 cut(s) 643, 665
MaeII ACGT 2 cut(s) 248, 916
MaeIII GTNAC 2 cut(s) 433, 641
MalI GATC 3 cut(s) 104, 180, 884
MboI GATC 3 cut(s) 102, 178, 882
MboII GAAGA 2 cut(s) 22, 173
MfeI CAATTG 1 cut(s) 961
MhlI GDGCHC 1 cut(s) 726
MlyI GAGTC 3 cut(s) 11, 205, 223
Mph1103I ATGCAT 1 cut(s) 658
MroXI GAANNNNTTC 1 cut(s) 363
MseI TTAA 2 cut(s) 744, 927
MslI CAYNNNNRTG 1 cut(s) 224
MspA1I CMGCKG 1 cut(s) 803
MspI CCGG 3 cut(s) 43, 312, 383
MspR9I CCNGG 2 cut(s) 282, 383
MunI CAATTG 1 cut(s) 961
MvaI CCWGG 1 cut(s) 282
MwoI GCNNNNNNNGC 2 cut(s) 142, 902
NciI CCSGG 1 cut(s) 383
NdeI CATATG 1 cut(s) 583
NdeII GATC 3 cut(s) 102, 178, 882
NlaIII CATG 2 cut(s) 332, 674
NlaIV GGNNCC 8 cut(s) 36, 47, 162, 207, 279, 286, 336, 454
NmuCI GTSAC 1 cut(s) 641
NsiI ATGCAT 1 cut(s) 658
PcsI WCGNNNNNNNCGW 1 cut(s) 517
PdmI GAANNNNTTC 1 cut(s) 363
PfeI GAWTC 3 cut(s) 28, 569, 699
PkrI GCNGC 4 cut(s) 189, 192, 712, 802
PleI GAGTC 3 cut(s) 11, 204, 223
PpsI GAGTC 3 cut(s) 11, 204, 223
PpuMI RGGWCCY 1 cut(s) 452
PshBI ATTAAT 2 cut(s) 744, 927
PsiI TTATAA 1 cut(s) 986
Psp124BI GAGCTC 1 cut(s) 726
Psp5II RGGWCCY 1 cut(s) 452
Psp6I CCWGG 1 cut(s) 280
PspGI CCWGG 1 cut(s) 280
PspN4I GGNNCC 8 cut(s) 36, 47, 162, 207, 279, 286, 336, 454
PspPI GGNCC 3 cut(s) 335, 452, 820
PspPPI RGGWCCY 1 cut(s) 452
PvuII CAGCTG 1 cut(s) 803
RsaI GTAC 4 cut(s) 36, 41, 811, 991
RsaNI GTAC 4 cut(s) 35, 40, 810, 990
RseI CAYNNNNRTG 1 cut(s) 224
SacI GAGCTC 1 cut(s) 726
SaqAI TTAA 2 cut(s) 744, 927
SatI GCNGC 4 cut(s) 188, 191, 711, 801
Sau3AI GATC 3 cut(s) 102, 178, 882
Sau96I GGNCC 3 cut(s) 335, 452, 820
SchI GAGTC 3 cut(s) 11, 205, 223
ScrFI CCNGG 2 cut(s) 282, 383
SduI GDGCHC 1 cut(s) 726
SfaNI GCATC 2 cut(s) 643, 665
SinI GGWCC 2 cut(s) 335, 452
SmiMI CAYNNNNRTG 1 cut(s) 224
SmlI CTYRAG 1 cut(s) 483
SmoI CTYRAG 1 cut(s) 483
SsiI CCGC 3 cut(s) 5, 188, 191
SstI GAGCTC 1 cut(s) 726
StyD4I CCNGG 2 cut(s) 280, 381
TaaI ACNGT 2 cut(s) 39, 274
TaiI ACGT 2 cut(s) 251, 919
TaqI TCGA 3 cut(s) 26, 105, 695
TaqII GACCGA 1 cut(s) 29
TauI GCSGC 2 cut(s) 190, 193
TfiI GAWTC 3 cut(s) 28, 569, 699
Tru1I TTAA 2 cut(s) 744, 927
Tru9I TTAA 2 cut(s) 744, 927
TscAI CASTG 2 cut(s) 357, 724
TseFI GTSAC 1 cut(s) 641
TseI GCWGC 2 cut(s) 710, 800
Tsp45I GTSAC 1 cut(s) 641
TspDTI ATGAA 6 cut(s) 276, 420, 621, 644, 691, 872
TspGWI ACGGA 2 cut(s) 74, 120
TspRI CASTG 2 cut(s) 357, 724
VpaK11BI GGWCC 2 cut(s) 335, 452
VspI ATTAAT 2 cut(s) 744, 927
XagI CCTNNNNNAGG 2 cut(s) 154, 1010
XapI RAATTY 2 cut(s) 522, 622
XmiI GTMKAC 1 cut(s) 199
XmnI GAANNNNTTC 1 cut(s) 363
ZraI GACGTC 1 cut(s) 917
Zsp2I ATGCAT 1 cut(s) 658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.